Wall clock time and date at job start Tue Mar 31 2020 20:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40050 * 125.95157 * 2 1 4 4 C 1.31892 * 108.22971 * 179.97438 * 3 2 1 5 5 C 1.47665 * 125.98634 * 179.73980 * 4 3 2 6 6 O 1.21579 * 120.00369 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00059 * 0.02562 * 5 4 3 8 8 C 1.39131 * 120.00278 * 176.13328 * 7 5 4 9 9 C 1.39509 * 119.83782 * 215.21293 * 8 7 5 10 10 C 1.36358 * 120.16702 * 179.76000 * 9 8 7 11 11 C 1.40882 * 119.83183 * 0.51289 * 10 9 8 12 12 C 1.41130 * 120.16465 * 179.72386 * 11 10 9 13 13 H 1.08003 * 120.00028 * 213.87712 * 12 11 10 14 14 C 1.39908 * 120.00269 * 33.86856 * 12 11 10 15 15 N 1.30872 * 120.00152 * 5.84808 * 14 12 11 16 16 Si 1.86800 * 120.00306 * 185.83963 * 14 12 11 17 17 H 1.48496 * 109.47124 * 90.00162 * 16 14 12 18 18 H 1.48495 * 109.47458 * 210.00437 * 16 14 12 19 19 H 1.48504 * 109.46959 * 330.00717 * 16 14 12 20 20 C 1.40883 * 119.67215 * 359.73912 * 11 10 9 21 21 C 1.36360 * 119.83360 * 0.02562 * 20 11 10 22 22 C 1.41074 * 108.02665 * 0.02562 * 4 3 2 23 23 C 1.35585 * 107.80355 * 0.02562 * 22 4 3 24 24 O 1.35770 * 126.08340 * 179.97438 * 23 22 4 25 25 C 1.42901 * 116.99937 * 4.70083 * 24 23 22 26 26 F 1.39902 * 109.47111 * 304.24365 * 25 24 23 27 27 F 1.39899 * 109.47082 * 64.24273 * 25 24 23 28 28 H 1.09001 * 109.46868 * 85.04072 * 1 2 3 29 29 H 1.08994 * 109.47862 * 205.04474 * 1 2 3 30 30 H 1.09005 * 109.47009 * 325.05071 * 1 2 3 31 31 H 0.97000 * 120.00446 * 356.13655 * 7 5 4 32 32 H 1.08001 * 119.91912 * 359.97438 * 9 8 7 33 33 H 1.07999 * 120.08706 * 180.25093 * 10 9 8 34 34 H 0.96998 * 120.00267 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.08314 * 179.97438 * 20 11 10 36 36 H 1.07994 * 119.91608 * 179.97438 * 21 20 11 37 37 H 1.08006 * 126.10010 * 180.02562 * 22 4 3 38 38 H 1.08997 * 109.47026 * 184.24852 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1337 0.0000 4 6 3.5436 0.7323 0.0006 5 6 4.7338 1.6063 -0.0047 6 8 5.8470 1.1175 -0.0040 7 7 4.5861 2.9459 -0.0101 8 6 5.7048 3.7695 0.0662 9 6 5.6329 4.9750 0.7646 10 6 6.7267 5.7850 0.8478 11 6 7.9284 5.4069 0.2171 12 6 9.0630 6.2427 0.2939 13 1 9.7494 6.2992 -0.5381 14 6 9.2986 6.9982 1.4476 15 7 8.5330 6.8450 2.4978 16 14 10.7062 8.2256 1.4890 17 1 10.2226 9.5494 1.0211 18 1 11.2159 8.3477 2.8784 19 1 11.7992 7.7555 0.6003 20 6 7.9918 4.1905 -0.4908 21 6 6.8912 3.3885 -0.5613 22 6 3.5511 -0.6785 0.0003 23 6 2.2624 -1.0999 -0.0010 24 8 1.8434 -2.3913 -0.0021 25 6 2.8501 -3.4001 0.1025 26 9 3.7881 -3.2308 -0.9217 27 9 3.4894 -3.2942 1.3424 28 1 -0.3633 0.0888 -1.0238 29 1 -0.3634 -0.9309 0.4350 30 1 -0.3633 0.8424 0.5887 31 1 3.6998 3.3360 -0.0672 32 1 4.7096 5.2659 1.2435 33 1 6.6708 6.7161 1.3922 34 1 8.6966 7.3686 3.2978 35 1 8.9095 3.8943 -0.9771 36 1 6.9382 2.4560 -1.1039 37 1 4.4271 -1.3102 0.0011 38 1 2.3893 -4.3839 0.0141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185011168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:33 Heat of formation + Delta-G solvation = -89.544767 kcal Electronic energy + Delta-G solvation = -27739.684617 eV Core-core repulsion = 23219.282747 eV Total energy + Delta-G solvation = -4520.401870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.29067 -48.37630 -42.74671 -41.11693 -39.40969 -38.95325 -36.25166 -34.89240 -34.38240 -31.55466 -31.20088 -30.65723 -28.46891 -27.40849 -26.64211 -24.57106 -23.26332 -22.59797 -22.35312 -21.18857 -19.97548 -19.23900 -19.14222 -19.01475 -18.28018 -17.67822 -17.40443 -17.19962 -17.02387 -16.18022 -16.06259 -15.69729 -15.48019 -15.25525 -15.13802 -14.91006 -14.75831 -14.54999 -14.47735 -14.02004 -13.87466 -13.65492 -13.50900 -13.43351 -13.28689 -13.11020 -12.85722 -12.80025 -12.51317 -12.27950 -11.84306 -11.41870 -11.28275 -11.05828 -10.73509 -10.43636 -9.85546 -9.49868 -8.80531 -8.55041 -6.32384 0.00748 0.45170 0.70436 0.97603 1.12630 1.40959 1.49738 1.54881 1.70061 2.14965 2.20259 2.25422 2.54699 2.79293 3.05527 3.41314 3.59104 3.66744 3.76358 4.02546 4.19547 4.36151 4.39337 4.40637 4.50500 4.66644 4.82167 4.88969 5.02090 5.08545 5.12219 5.28820 5.38025 5.65884 5.70758 5.84510 5.95009 6.07414 6.12570 6.35394 6.58125 6.64882 6.93941 6.95187 7.17046 8.41319 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024283 B = 0.002231 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.802404 B =12549.226524 C =13161.974743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.343 5.343 3 N -0.245 5.245 4 C 0.046 3.954 5 C 0.583 3.417 6 O -0.552 6.552 7 N -0.624 5.624 8 C 0.009 3.991 9 C -0.110 4.110 10 C -0.157 4.157 11 C 0.077 3.923 12 C -0.497 4.497 13 H 0.076 0.924 14 C 0.030 3.970 15 N -0.838 5.838 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.261 1.261 20 C -0.221 4.221 21 C -0.090 4.090 22 C -0.287 4.287 23 C 0.272 3.728 24 O -0.305 6.305 25 C 0.418 3.582 26 F -0.207 7.207 27 F -0.209 7.209 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.287 0.713 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -18.181 -3.119 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.136 5.136 3 N -0.077 5.077 4 C -0.119 4.119 5 C 0.368 3.632 6 O -0.428 6.428 7 N -0.268 5.268 8 C -0.084 4.084 9 C -0.130 4.130 10 C -0.177 4.177 11 C 0.075 3.925 12 C -0.527 4.527 13 H 0.094 0.906 14 C -0.183 4.183 15 N -0.465 5.465 16 Si 0.809 3.191 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.241 4.241 21 C -0.110 4.110 22 C -0.318 4.318 23 C 0.102 3.898 24 O -0.217 6.217 25 C 0.330 3.670 26 F -0.189 7.189 27 F -0.190 7.190 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.256 0.744 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.173 0.827 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -20.468 -17.616 -2.876 27.158 hybrid contribution 1.264 0.010 0.210 1.281 sum -19.204 -17.606 -2.666 26.190 Atomic orbital electron populations 1.22519 0.69747 1.06972 1.05937 1.49010 1.08435 0.99802 1.56330 1.77753 1.00010 1.05731 1.24203 1.21504 0.91821 0.94038 1.04522 1.17268 0.86806 0.81929 0.77181 1.90777 1.25959 1.75222 1.50813 1.42683 1.09444 1.04388 1.70287 1.17278 0.88623 0.94665 1.07826 1.20497 0.99048 0.94477 0.99010 1.20925 0.91915 1.00528 1.04339 1.18027 0.93225 0.90923 0.90336 1.19754 1.08155 1.22927 1.01880 0.90604 1.26755 0.99988 0.97555 0.94019 1.69850 1.37506 1.35805 1.03378 0.85106 0.77533 0.77972 0.78463 1.18378 1.19456 1.18508 1.20908 0.97965 0.96026 1.09251 1.20514 0.93012 0.98693 0.98787 1.21214 0.96261 0.94329 1.19995 1.18495 0.88806 0.82151 1.00297 1.86396 1.37039 1.10029 1.88246 1.24719 0.77649 0.93545 0.71112 1.93123 1.68856 1.96114 1.60772 1.93128 1.83877 1.96635 1.45390 0.88210 0.86349 0.87391 0.74418 0.85789 0.87035 0.90291 0.88222 0.87373 0.82734 0.72523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.44 127.77 1.46 2.26 16 2 N -0.34 -7.20 4.04 -480.56 -1.94 -9.13 16 3 N -0.25 -6.83 12.27 -48.44 -0.59 -7.43 16 4 C 0.05 1.54 7.09 42.32 0.30 1.84 16 5 C 0.58 23.48 7.65 86.73 0.66 24.14 16 6 O -0.55 -26.27 14.34 -3.97 -0.06 -26.32 16 7 N -0.62 -24.26 5.30 -305.85 -1.62 -25.88 16 8 C 0.01 0.43 6.30 38.60 0.24 0.67 16 9 C -0.11 -5.18 9.90 22.14 0.22 -4.96 16 10 C -0.16 -8.39 8.57 22.48 0.19 -8.19 16 11 C 0.08 4.35 5.51 -21.27 -0.12 4.23 16 12 C -0.50 -27.61 9.03 23.38 0.21 -27.40 16 13 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 14 C 0.03 1.53 5.31 85.24 0.45 1.99 16 15 N -0.84 -44.99 10.94 21.82 0.24 -44.76 16 16 Si 0.99 39.38 29.56 68.60 2.03 41.41 16 17 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 C -0.22 -11.87 9.74 22.48 0.22 -11.66 16 21 C -0.09 -4.56 8.60 22.14 0.19 -4.37 16 22 C -0.29 -8.55 8.86 22.35 0.20 -8.35 16 23 C 0.27 6.12 7.48 83.46 0.62 6.74 16 24 O -0.30 -4.38 10.35 -90.98 -0.94 -5.32 16 25 C 0.42 4.35 6.00 113.37 0.68 5.03 16 26 F -0.21 -3.56 15.44 44.97 0.69 -2.87 16 27 F -0.21 -3.56 16.75 44.97 0.75 -2.80 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.12 0.52 8.04 -2.39 -0.02 0.50 16 30 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.42 13.47 8.51 -92.71 -0.79 12.68 16 32 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.11 6.12 6.44 -2.91 -0.02 6.10 16 34 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 35 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.11 5.43 6.25 -2.91 -0.02 5.41 16 37 H 0.16 4.83 6.57 -2.91 -0.02 4.81 16 38 H 0.26 -0.96 8.14 -2.39 -0.02 -0.98 16 Total: -1.00 -76.71 344.27 4.46 -72.25 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.36 Total: 28.86 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.54 Total: -18.02 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -3.91 Total: -87.20 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.00 Total: -31.64 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.45 Total: -5.67 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -76.71 4.46 -72.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185011168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.291 kcal (2) G-P(sol) polarization free energy of solvation -76.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds