Wall clock time and date at job start Tue Mar 31 2020 20:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40056 * 125.94845 * 2 1 4 4 C 1.31934 * 108.22344 * 179.97438 * 3 2 1 5 5 C 1.47580 * 125.98810 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99770 * 174.95974 * 5 4 3 7 7 N 1.34781 * 119.99957 * 355.24061 * 5 4 3 8 8 C 1.36957 * 119.99792 * 5.54014 * 7 5 4 9 9 H 1.07995 * 120.00010 * 299.20366 * 8 7 5 10 10 C 1.38959 * 119.99901 * 119.21285 * 8 7 5 11 11 N 1.31388 * 119.99929 * 180.46337 * 10 8 7 12 12 Si 1.86801 * 119.99883 * 0.45733 * 10 8 7 13 13 H 1.48497 * 109.47018 * 94.91695 * 12 10 8 14 14 H 1.48503 * 109.47238 * 214.91937 * 12 10 8 15 15 H 1.48503 * 109.47032 * 334.91701 * 12 10 8 16 16 C 1.39710 * 119.99775 * 185.54078 * 7 5 4 17 17 C 1.38976 * 120.07940 * 7.34597 * 16 7 5 18 18 C 1.38080 * 119.91859 * 179.78826 * 17 16 7 19 19 C 1.38309 * 120.07776 * 0.47042 * 18 17 16 20 20 C 1.38316 * 120.15954 * 359.78387 * 19 18 17 21 21 C 1.38075 * 120.08285 * 359.97438 * 20 19 18 22 22 C 1.41104 * 108.02005 * 0.24641 * 4 3 2 23 23 C 1.35571 * 107.79970 * 359.59585 * 22 4 3 24 24 O 1.35769 * 126.07528 * 180.14734 * 23 22 4 25 25 C 1.42899 * 117.00236 * 354.78063 * 24 23 22 26 26 F 1.39905 * 109.46917 * 304.75509 * 25 24 23 27 27 F 1.39904 * 109.47258 * 64.75363 * 25 24 23 28 28 H 1.08998 * 109.47301 * 95.04464 * 1 2 3 29 29 H 1.09008 * 109.46751 * 215.04210 * 1 2 3 30 30 H 1.08994 * 109.47058 * 335.04040 * 1 2 3 31 31 H 0.97004 * 120.00026 * 179.97438 * 11 10 8 32 32 H 1.08000 * 120.04189 * 0.03329 * 17 16 7 33 33 H 1.08000 * 119.95692 * 180.25643 * 18 17 16 34 34 H 1.07996 * 119.91722 * 179.76443 * 19 18 17 35 35 H 1.08005 * 119.95803 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.04142 * 179.97438 * 21 20 19 37 37 H 1.08001 * 126.10178 * 179.75814 * 22 4 3 38 38 H 1.08993 * 109.47739 * 184.75907 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1338 0.0000 4 6 3.5439 0.7321 0.0006 5 6 4.7335 1.6056 0.0002 6 8 5.8443 1.1199 0.0933 7 7 4.5883 2.9420 -0.0976 8 6 3.3366 3.4977 -0.0823 9 1 2.6210 3.2376 -0.8481 10 6 2.9876 4.3963 0.9185 11 7 1.7838 4.9225 0.9383 12 14 4.2298 4.8562 2.2356 13 1 4.9270 6.1072 1.8433 14 1 3.5274 5.0650 3.5272 15 1 5.2226 3.7617 2.3834 16 6 5.7146 3.7603 -0.2145 17 6 6.9725 3.1940 -0.3837 18 6 8.0829 4.0060 -0.5033 19 6 7.9456 5.3810 -0.4452 20 6 6.6959 5.9479 -0.2717 21 6 5.5805 5.1423 -0.1563 22 6 3.5512 -0.6789 -0.0048 23 6 2.2625 -1.1000 0.0005 24 8 1.8434 -2.3914 0.0007 25 6 2.8486 -3.3997 -0.1211 26 9 3.6080 -3.1645 -1.2724 27 9 3.6819 -3.3656 1.0022 28 1 -0.3634 -0.0904 -1.0236 29 1 -0.3633 -0.8415 0.5901 30 1 -0.3633 0.9316 0.4336 31 1 1.5401 5.5495 1.6372 32 1 7.0808 2.1202 -0.4255 33 1 9.0601 3.5667 -0.6389 34 1 8.8163 6.0135 -0.5353 35 1 6.5925 7.0220 -0.2264 36 1 4.6051 5.5857 -0.0204 37 1 4.4270 -1.3107 -0.0095 38 1 2.3747 -4.3786 -0.1923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185539828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:47 Heat of formation + Delta-G solvation = -21.979454 kcal Electronic energy + Delta-G solvation = -29565.021165 eV Core-core repulsion = 25047.549147 eV Total energy + Delta-G solvation = -4517.472018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.34888 -47.41891 -41.07875 -39.89104 -38.12342 -37.35751 -35.16717 -32.96189 -32.17318 -30.16661 -29.70067 -28.86815 -26.84570 -26.13606 -25.25080 -23.18605 -21.85653 -21.12271 -20.91173 -19.48496 -18.63161 -18.16527 -18.03376 -17.63260 -16.31346 -16.13031 -15.86280 -15.55548 -15.51307 -14.64773 -14.29825 -14.22446 -14.10355 -13.89970 -13.77610 -13.77012 -13.44925 -13.27716 -12.89580 -12.79377 -12.66283 -12.49943 -12.40651 -12.14529 -11.95178 -11.81452 -11.30600 -11.04546 -10.74438 -10.32040 -10.08758 -9.97787 -9.30708 -8.96522 -8.80414 -8.65405 -8.18672 -8.04858 -7.00508 -6.45300 -4.42897 1.74632 1.81453 2.13879 2.18977 2.65840 3.03822 3.17033 3.27684 3.37536 3.38927 4.02704 4.08218 4.13027 4.15486 4.47947 4.65767 4.74633 4.90836 5.20486 5.36747 5.43952 5.60782 5.64975 5.70371 5.84011 5.88955 5.95052 6.27193 6.30775 6.39615 6.52745 6.72701 6.83846 7.16256 7.20843 7.27226 7.30292 7.37855 7.76094 7.93777 8.03777 8.33328 8.82322 9.08868 9.34711 10.56456 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004389 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.938142 B = 6378.780578 C = 7710.039881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.369 5.369 3 N -0.157 5.157 4 C 0.064 3.936 5 C 0.575 3.425 6 O -0.546 6.546 7 N -0.396 5.396 8 C -0.347 4.347 9 H 0.120 0.880 10 C 0.085 3.915 11 N -0.851 5.851 12 Si 0.868 3.132 13 H -0.256 1.256 14 H -0.290 1.290 15 H -0.260 1.260 16 C 0.162 3.838 17 C -0.177 4.177 18 C -0.108 4.108 19 C -0.168 4.168 20 C -0.104 4.104 21 C -0.161 4.161 22 C -0.269 4.269 23 C 0.236 3.764 24 O -0.320 6.320 25 C 0.427 3.573 26 F -0.193 7.193 27 F -0.194 7.194 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.277 0.723 32 H 0.174 0.826 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -11.836 -1.832 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 N 0.016 4.984 4 C -0.103 4.103 5 C 0.365 3.635 6 O -0.426 6.426 7 N -0.105 5.105 8 C -0.474 4.474 9 H 0.137 0.863 10 C -0.124 4.124 11 N -0.485 5.485 12 Si 0.695 3.305 13 H -0.181 1.181 14 H -0.217 1.217 15 H -0.184 1.184 16 C 0.066 3.934 17 C -0.197 4.197 18 C -0.126 4.126 19 C -0.187 4.187 20 C -0.123 4.123 21 C -0.181 4.181 22 C -0.300 4.300 23 C 0.070 3.930 24 O -0.233 6.233 25 C 0.337 3.663 26 F -0.175 7.175 27 F -0.176 7.176 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.190 0.810 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.872 -11.155 -1.678 11.435 hybrid contribution 1.001 -0.267 0.767 1.289 sum -0.871 -11.422 -0.911 11.491 Atomic orbital electron populations 1.21855 0.74047 1.04827 1.03096 1.49482 1.07102 1.01233 1.58231 1.79114 1.00551 0.99801 1.18971 1.21578 0.92656 0.92489 1.03624 1.17658 0.86022 0.81950 0.77866 1.90386 1.24492 1.75451 1.52287 1.41232 1.06050 1.03616 1.59638 1.19116 0.86750 1.27488 1.14082 0.86276 1.25504 0.95615 0.95275 0.96038 1.69624 1.18161 1.27416 1.33270 0.87149 0.81567 0.81178 0.80634 1.18062 1.21742 1.18428 1.18448 0.87726 0.90745 0.96458 1.22521 0.90729 1.03923 1.02541 1.20989 0.98052 0.93381 1.00206 1.20928 0.96818 0.95104 1.05847 1.20818 0.92375 0.98912 1.00213 1.21182 1.00299 0.92337 1.04260 1.21023 0.94549 0.95002 1.19420 1.18708 0.90161 0.80162 1.03973 1.86276 1.35918 1.12137 1.89013 1.23333 0.78345 0.92333 0.72335 1.93141 1.78096 1.95359 1.50874 1.93141 1.74157 1.96830 1.53440 0.90839 0.90090 0.88211 0.91287 0.80999 0.86807 0.87245 0.86781 0.84116 0.82575 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 11.42 59.85 0.68 2.01 16 2 N -0.37 -6.69 4.04 -68.19 -0.28 -6.96 16 3 N -0.16 -3.54 9.75 33.33 0.32 -3.22 16 4 C 0.06 1.47 6.84 -82.93 -0.57 0.91 16 5 C 0.57 14.28 7.54 -12.45 -0.09 14.18 16 6 O -0.55 -13.57 13.40 5.28 0.07 -13.49 16 7 N -0.40 -10.12 2.14 -60.05 -0.13 -10.25 16 8 C -0.35 -9.19 7.04 -15.00 -0.11 -9.30 16 9 H 0.12 3.37 7.18 -52.49 -0.38 2.99 16 10 C 0.09 2.27 4.54 -17.47 -0.08 2.19 16 11 N -0.85 -23.08 13.96 55.50 0.77 -22.31 16 12 Si 0.87 21.45 23.67 -169.99 -4.02 17.42 16 13 H -0.26 -5.94 6.08 56.52 0.34 -5.60 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.26 -6.87 6.80 56.52 0.38 -6.48 16 16 C 0.16 3.93 5.00 -83.72 -0.42 3.51 16 17 C -0.18 -3.95 8.98 -39.37 -0.35 -4.31 16 18 C -0.11 -2.03 10.04 -39.61 -0.40 -2.43 16 19 C -0.17 -3.02 10.04 -39.53 -0.40 -3.42 16 20 C -0.10 -2.06 9.96 -39.61 -0.39 -2.45 16 21 C -0.16 -3.69 5.69 -39.37 -0.22 -3.91 16 22 C -0.27 -5.29 8.80 -39.45 -0.35 -5.64 16 23 C 0.24 4.06 7.46 -16.72 -0.12 3.94 16 24 O -0.32 -4.13 10.43 -19.02 -0.20 -4.33 16 25 C 0.43 4.19 5.99 101.05 0.61 4.79 16 26 F -0.19 -2.35 15.93 2.25 0.04 -2.31 16 27 F -0.19 -2.36 16.28 2.25 0.04 -2.33 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.17 3.95 4.70 -55.31 -0.26 3.69 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.14 3.41 4.48 -52.49 -0.24 3.18 16 37 H 0.16 2.94 6.64 -52.49 -0.35 2.59 16 38 H 0.19 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -32.39 326.97 -4.06 -36.45 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.39 Total: 6.31 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.21 Total: 0.09 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.70 Total: -42.73 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.13 Total: -17.83 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.02 Total: 17.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.39 -4.06 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185539828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.474 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds