Wall clock time and date at job start Tue Mar 31 2020 20:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40056 * 125.94845 * 2 1 4 4 C 1.31934 * 108.22344 * 179.97438 * 3 2 1 5 5 C 1.47580 * 125.98810 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99770 * 174.95974 * 5 4 3 7 7 N 1.34781 * 119.99957 * 355.24061 * 5 4 3 8 8 C 1.36957 * 119.99792 * 5.54014 * 7 5 4 9 9 H 1.07995 * 120.00010 * 299.20366 * 8 7 5 10 10 C 1.38959 * 119.99901 * 119.21285 * 8 7 5 11 11 N 1.31388 * 119.99929 * 180.46337 * 10 8 7 12 12 Si 1.86801 * 119.99883 * 0.45733 * 10 8 7 13 13 H 1.48497 * 109.47018 * 94.91695 * 12 10 8 14 14 H 1.48503 * 109.47238 * 214.91937 * 12 10 8 15 15 H 1.48503 * 109.47032 * 334.91701 * 12 10 8 16 16 C 1.39710 * 119.99775 * 185.54078 * 7 5 4 17 17 C 1.38976 * 120.07940 * 7.34597 * 16 7 5 18 18 C 1.38080 * 119.91859 * 179.78826 * 17 16 7 19 19 C 1.38309 * 120.07776 * 0.47042 * 18 17 16 20 20 C 1.38316 * 120.15954 * 359.78387 * 19 18 17 21 21 C 1.38075 * 120.08285 * 359.97438 * 20 19 18 22 22 C 1.41104 * 108.02005 * 0.24641 * 4 3 2 23 23 C 1.35571 * 107.79970 * 359.59585 * 22 4 3 24 24 O 1.35769 * 126.07528 * 180.14734 * 23 22 4 25 25 C 1.42899 * 117.00236 * 354.78063 * 24 23 22 26 26 F 1.39905 * 109.46917 * 304.75509 * 25 24 23 27 27 F 1.39904 * 109.47258 * 64.75363 * 25 24 23 28 28 H 1.08998 * 109.47301 * 95.04464 * 1 2 3 29 29 H 1.09008 * 109.46751 * 215.04210 * 1 2 3 30 30 H 1.08994 * 109.47058 * 335.04040 * 1 2 3 31 31 H 0.97004 * 120.00026 * 179.97438 * 11 10 8 32 32 H 1.08000 * 120.04189 * 0.03329 * 17 16 7 33 33 H 1.08000 * 119.95692 * 180.25643 * 18 17 16 34 34 H 1.07996 * 119.91722 * 179.76443 * 19 18 17 35 35 H 1.08005 * 119.95803 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.04142 * 179.97438 * 21 20 19 37 37 H 1.08001 * 126.10178 * 179.75814 * 22 4 3 38 38 H 1.08993 * 109.47739 * 184.75907 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1338 0.0000 4 6 3.5439 0.7321 0.0006 5 6 4.7335 1.6056 0.0002 6 8 5.8443 1.1199 0.0933 7 7 4.5883 2.9420 -0.0976 8 6 3.3366 3.4977 -0.0823 9 1 2.6210 3.2376 -0.8481 10 6 2.9876 4.3963 0.9185 11 7 1.7838 4.9225 0.9383 12 14 4.2298 4.8562 2.2356 13 1 4.9270 6.1072 1.8433 14 1 3.5274 5.0650 3.5272 15 1 5.2226 3.7617 2.3834 16 6 5.7146 3.7603 -0.2145 17 6 6.9725 3.1940 -0.3837 18 6 8.0829 4.0060 -0.5033 19 6 7.9456 5.3810 -0.4452 20 6 6.6959 5.9479 -0.2717 21 6 5.5805 5.1423 -0.1563 22 6 3.5512 -0.6789 -0.0048 23 6 2.2625 -1.1000 0.0005 24 8 1.8434 -2.3914 0.0007 25 6 2.8486 -3.3997 -0.1211 26 9 3.6080 -3.1645 -1.2724 27 9 3.6819 -3.3656 1.0022 28 1 -0.3634 -0.0904 -1.0236 29 1 -0.3633 -0.8415 0.5901 30 1 -0.3633 0.9316 0.4336 31 1 1.5401 5.5495 1.6372 32 1 7.0808 2.1202 -0.4255 33 1 9.0601 3.5667 -0.6389 34 1 8.8163 6.0135 -0.5353 35 1 6.5925 7.0220 -0.2264 36 1 4.6051 5.5857 -0.0204 37 1 4.4270 -1.3107 -0.0095 38 1 2.3747 -4.3786 -0.1923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185539828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:46 Heat of formation + Delta-G solvation = -44.801783 kcal Electronic energy + Delta-G solvation = -29566.010815 eV Core-core repulsion = 25047.549147 eV Total energy + Delta-G solvation = -4518.461668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.23397 -48.32018 -42.60862 -41.59774 -39.39551 -38.94499 -37.01833 -34.36140 -34.17119 -31.78894 -31.22273 -30.41433 -28.20434 -27.29791 -27.00772 -24.76078 -23.47511 -22.60755 -22.30499 -21.13620 -20.29687 -19.50014 -18.95867 -18.78920 -17.82835 -17.65972 -17.49034 -17.13646 -16.96649 -16.31740 -15.97267 -15.72766 -15.45108 -15.17673 -15.09944 -14.92265 -14.77169 -14.70614 -14.47676 -14.46856 -14.19201 -13.89791 -13.75566 -13.41782 -13.24591 -13.14841 -13.06680 -12.68743 -12.51300 -12.17685 -11.81539 -11.72307 -11.16914 -10.87060 -10.49490 -10.24814 -9.68038 -9.66710 -8.81503 -8.45814 -6.47356 0.07199 0.51046 0.62423 0.69303 1.06238 1.19968 1.28065 1.36763 1.88347 2.11765 2.31194 2.34909 2.59809 2.77325 3.07670 3.30266 3.47971 3.64144 3.83634 4.07875 4.18065 4.22437 4.33840 4.40377 4.44353 4.47633 4.65598 4.67100 4.74993 4.83235 4.99157 5.17339 5.23991 5.49928 5.58069 5.66504 5.71018 5.91794 5.96463 6.15867 6.33629 6.44275 6.85916 7.13466 7.42616 8.56126 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004389 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.938142 B = 6378.780578 C = 7710.039881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.364 5.364 3 N -0.198 5.198 4 C 0.036 3.964 5 C 0.563 3.437 6 O -0.558 6.558 7 N -0.409 5.409 8 C -0.336 4.336 9 H 0.092 0.908 10 C 0.061 3.939 11 N -0.881 5.881 12 Si 0.912 3.088 13 H -0.231 1.231 14 H -0.290 1.290 15 H -0.289 1.289 16 C 0.127 3.873 17 C -0.197 4.197 18 C -0.100 4.100 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.184 4.184 22 C -0.286 4.286 23 C 0.262 3.738 24 O -0.308 6.308 25 C 0.418 3.582 26 F -0.208 7.208 27 F -0.209 7.209 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.281 0.719 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.158 0.842 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -12.412 -1.845 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.157 5.157 3 N -0.027 5.027 4 C -0.130 4.130 5 C 0.354 3.646 6 O -0.440 6.440 7 N -0.118 5.118 8 C -0.464 4.464 9 H 0.109 0.891 10 C -0.146 4.146 11 N -0.516 5.516 12 Si 0.739 3.261 13 H -0.154 1.154 14 H -0.217 1.217 15 H -0.215 1.215 16 C 0.032 3.968 17 C -0.217 4.217 18 C -0.118 4.118 19 C -0.169 4.169 20 C -0.122 4.122 21 C -0.204 4.204 22 C -0.317 4.317 23 C 0.093 3.907 24 O -0.221 6.221 25 C 0.329 3.671 26 F -0.190 7.190 27 F -0.191 7.191 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.175 0.825 38 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.925 -11.709 -1.704 11.869 hybrid contribution 0.725 -0.253 0.678 1.024 sum -0.200 -11.962 -1.026 12.008 Atomic orbital electron populations 1.22297 0.71067 1.06010 1.05286 1.49676 1.08602 1.00684 1.56722 1.78955 1.00937 1.02354 1.20421 1.21556 0.92407 0.93653 1.05423 1.17998 0.86782 0.82192 0.77641 1.90356 1.24954 1.75691 1.53013 1.41294 1.06152 1.04036 1.60364 1.18762 0.87111 1.27210 1.13344 0.89077 1.25829 0.96474 0.95300 0.97023 1.69668 1.19081 1.28582 1.34287 0.86508 0.79675 0.80945 0.78999 1.15423 1.21745 1.21514 1.18775 0.87965 0.91402 0.98640 1.22541 0.91325 1.03931 1.03891 1.21428 0.98406 0.93876 0.98121 1.21444 0.97660 0.95103 1.02662 1.21258 0.91991 1.00279 0.98711 1.21199 1.00788 0.92172 1.06285 1.21046 0.95941 0.93665 1.21067 1.18586 0.89008 0.81856 1.01212 1.86359 1.37129 1.10138 1.88477 1.24680 0.77974 0.93391 0.71026 1.93115 1.78658 1.95458 1.51734 1.93114 1.74829 1.96807 1.54319 0.88532 0.86509 0.88994 0.90835 0.82384 0.83074 0.82396 0.83651 0.86077 0.82452 0.72575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.27 11.42 127.77 1.46 3.73 16 2 N -0.36 -13.22 4.04 -480.56 -1.94 -15.16 16 3 N -0.20 -9.33 9.75 -48.47 -0.47 -9.80 16 4 C 0.04 1.73 6.84 42.30 0.29 2.02 16 5 C 0.56 29.65 7.54 86.71 0.65 30.31 16 6 O -0.56 -29.30 13.40 -4.02 -0.05 -29.35 16 7 N -0.41 -21.97 2.14 -462.17 -0.99 -22.96 16 8 C -0.34 -18.85 7.04 84.07 0.59 -18.26 16 9 H 0.09 5.53 7.18 -2.91 -0.02 5.51 16 10 C 0.06 3.35 4.54 84.93 0.39 3.73 16 11 N -0.88 -49.42 13.96 21.66 0.30 -49.12 16 12 Si 0.91 45.49 23.67 68.60 1.62 47.11 16 13 H -0.23 -10.40 6.08 99.48 0.60 -9.80 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 15 H -0.29 -15.75 6.80 99.48 0.68 -15.07 16 16 C 0.13 6.32 5.00 38.24 0.19 6.51 16 17 C -0.20 -8.84 8.98 22.41 0.20 -8.64 16 18 C -0.10 -3.51 10.04 22.25 0.22 -3.28 16 19 C -0.15 -4.77 10.04 22.31 0.22 -4.54 16 20 C -0.10 -3.81 9.96 22.25 0.22 -3.58 16 21 C -0.18 -8.46 5.69 22.41 0.13 -8.33 16 22 C -0.29 -11.57 8.80 22.36 0.20 -11.37 16 23 C 0.26 8.86 7.46 83.45 0.62 9.49 16 24 O -0.31 -7.18 10.43 -90.96 -0.95 -8.13 16 25 C 0.42 7.03 5.99 113.37 0.68 7.71 16 26 F -0.21 -4.75 15.93 44.97 0.72 -4.04 16 27 F -0.21 -4.76 16.28 44.97 0.73 -4.03 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.12 2.03 8.14 -2.38 -0.02 2.02 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.16 7.51 4.70 -47.67 -0.22 7.29 16 33 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.12 5.99 4.48 -2.91 -0.01 5.98 16 37 H 0.16 6.13 6.64 -2.91 -0.02 6.11 16 38 H 0.26 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -76.54 326.97 5.83 -70.71 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.79 Total: 19.29 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.07 Total: 5.48 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.10 Total: -97.04 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.00 Total: -37.48 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 1.45 Total: -8.07 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.62 Total: 47.11 kcal Total: -76.54 5.83 -70.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185539828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.907 kcal (2) G-P(sol) polarization free energy of solvation -76.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds