Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47015 * 2 1 4 4 C 1.46499 * 119.99892 * 274.99947 * 3 2 1 5 5 C 1.50696 * 109.47261 * 274.99916 * 4 3 2 6 6 H 1.08000 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99926 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46942 * 90.00144 * 9 7 5 11 11 H 1.48499 * 109.47196 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47194 * 330.00289 * 9 7 5 13 13 S 1.65599 * 119.99695 * 95.00201 * 3 2 1 14 14 O 1.42098 * 106.40019 * 156.45953 * 13 3 2 15 15 O 1.42104 * 106.40408 * 23.54182 * 13 3 2 16 16 C 1.76201 * 107.21727 * 269.99827 * 13 3 2 17 17 C 1.38282 * 119.93179 * 90.00489 * 16 13 3 18 18 C 1.38122 * 120.06286 * 180.25689 * 17 16 13 19 19 C 1.38817 * 119.93409 * 359.48623 * 18 17 16 20 20 N 1.40264 * 120.06538 * 180.26125 * 19 18 17 21 21 C 1.35065 * 127.39102 * 359.93330 * 20 19 18 22 22 N 1.30732 * 107.27778 * 179.84603 * 21 20 19 23 23 N 1.28420 * 110.64472 * 0.44127 * 22 21 20 24 24 N 1.28950 * 110.20404 * 359.72698 * 23 22 21 25 25 C 1.38829 * 119.87191 * 0.49096 * 19 18 17 26 26 C 1.38126 * 119.93049 * 359.76207 * 25 19 18 27 27 H 1.08995 * 109.47049 * 299.99626 * 1 2 3 28 28 H 1.09004 * 109.47506 * 59.99982 * 1 2 3 29 29 H 1.09006 * 109.46598 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47390 * 240.00531 * 2 1 3 31 31 H 1.08997 * 109.47352 * 120.00402 * 2 1 3 32 32 H 1.09005 * 109.46965 * 35.00331 * 4 3 2 33 33 H 1.09008 * 109.46744 * 154.99980 * 4 3 2 34 34 H 0.97003 * 119.99253 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.96624 * 359.97137 * 17 16 13 36 36 H 1.07998 * 120.03531 * 179.74058 * 18 17 16 37 37 H 1.08001 * 126.35438 * 359.96765 * 21 20 19 38 38 H 1.07997 * 120.03315 * 179.79219 * 25 19 18 39 39 H 1.07997 * 119.96520 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3840 7 6 3.8528 2.3615 -3.0844 8 7 3.0282 3.1872 -3.6910 9 14 5.5098 1.9657 -3.8506 10 1 5.3747 0.7828 -4.7383 11 1 5.9786 3.1296 -4.6449 12 1 6.4932 1.6699 -2.7780 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7096 1.0798 2.3499 16 6 0.9555 2.9118 2.0254 17 6 0.0884 2.2259 2.8560 18 6 -1.0570 2.8420 3.3210 19 6 -1.3319 4.1546 2.9624 20 7 -2.4914 4.7848 3.4375 21 6 -3.4381 4.2595 4.2451 22 7 -4.3387 5.1865 4.4416 23 7 -4.0307 6.2591 3.8061 24 7 -2.9207 6.0967 3.1702 25 6 -0.4593 4.8408 2.1288 26 6 0.6819 4.2177 1.6626 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1804 -1.0755 34 1 3.2803 3.5903 -4.5365 35 1 0.3046 1.2059 3.1376 36 1 -1.7360 2.3045 3.9663 37 1 -3.4481 3.2600 4.6541 38 1 -0.6723 5.8610 1.8454 39 1 1.3609 4.7509 1.0138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264080202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = 84.270305 kcal Electronic energy + Delta-G solvation = -26734.656099 eV Core-core repulsion = 22807.924554 eV Total energy + Delta-G solvation = -3926.731545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63006 -39.83566 -36.88496 -36.22393 -35.59469 -35.36020 -32.81448 -32.76006 -31.53908 -30.67125 -30.11904 -26.73304 -25.69916 -24.43463 -23.25308 -22.71794 -22.18162 -21.80605 -19.18406 -18.79962 -17.65899 -17.04135 -16.81354 -16.65486 -16.38599 -16.03878 -15.35491 -14.93130 -14.48990 -14.14895 -13.98851 -13.90280 -13.84925 -13.64584 -13.45970 -13.00711 -12.72299 -12.25252 -12.19190 -12.00808 -11.83707 -11.74198 -11.59050 -11.50548 -11.48582 -11.10419 -10.97440 -10.94581 -10.85437 -10.57874 -10.51309 -10.07619 -9.85596 -9.54414 -9.34205 -8.52051 -8.22692 -6.14124 -4.18488 -0.29422 0.75223 0.82117 1.04421 1.28158 1.83232 2.97126 3.27095 3.34332 3.39130 3.52596 3.57035 3.75209 4.13479 4.22043 4.32022 4.38865 4.39607 4.73462 4.86894 4.89241 5.04168 5.15045 5.21234 5.27160 5.35338 5.48470 5.56468 5.59830 5.64021 5.81275 5.82906 5.92582 6.15332 6.32601 6.45094 6.49710 7.09803 7.25315 7.45828 7.83015 7.94553 8.10106 8.83938 9.47368 10.94393 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003158 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.097822 B = 8863.863541 C = 9415.192107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.977 5.977 4 C 0.255 3.745 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.682 3.318 14 O -0.935 6.935 15 O -0.971 6.971 16 C -0.666 4.666 17 C 0.002 3.998 18 C -0.146 4.146 19 C 0.172 3.828 20 N -0.331 5.331 21 C 0.231 3.769 22 N -0.330 5.330 23 N -0.033 5.033 24 N -0.069 5.069 25 C -0.122 4.122 26 C 0.009 3.991 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.241 0.759 38 H 0.150 0.850 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 -3.610 13.369 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.817 5.817 4 C 0.134 3.866 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.196 1.196 13 S 2.768 3.232 14 O -0.925 6.925 15 O -0.961 6.961 16 C -0.749 4.749 17 C -0.018 4.018 18 C -0.168 4.168 19 C 0.079 3.921 20 N -0.121 5.121 21 C -0.066 4.066 22 N -0.178 5.178 23 N -0.028 5.028 24 N -0.054 5.054 25 C -0.143 4.143 26 C -0.011 4.011 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.257 0.743 38 H 0.168 0.832 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.415 -2.124 13.480 17.167 hybrid contribution 0.490 -0.717 -0.549 1.027 sum -9.925 -2.842 12.931 16.547 Atomic orbital electron populations 1.22292 0.97257 1.01697 1.02072 1.21238 0.93048 0.82815 1.04048 1.57450 1.80996 1.21191 1.22088 1.19136 0.97738 0.91193 0.78559 1.21456 1.01979 1.27909 1.05630 0.91977 1.24923 0.97398 0.94738 0.96849 1.69915 1.36158 1.30038 1.17245 0.86511 0.83931 0.77883 0.79249 1.20609 1.21050 1.19627 1.02499 0.73994 0.73757 0.72990 1.93626 1.57866 1.57770 1.83220 1.93510 1.82884 1.56316 1.63368 1.31923 1.24764 1.06721 1.11524 1.20803 0.90323 0.99686 0.90998 1.20909 0.99894 0.92257 1.03706 1.17816 0.84420 0.92327 0.97538 1.49204 1.17790 1.11107 1.34009 1.27513 0.85120 1.02126 0.91886 1.74511 1.24615 0.97096 1.21620 1.78114 1.05073 1.16435 1.03200 1.82741 1.09110 0.93550 1.20016 1.21124 0.94060 1.01550 0.97566 1.21049 0.94431 0.92115 0.93459 0.93559 0.91793 0.91916 0.89159 0.90199 0.94346 0.94339 0.92602 0.82777 0.84037 0.74264 0.83229 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.71 6.40 -4.04 -0.03 1.69 16 3 N -0.98 -17.85 2.77 -115.66 -0.32 -18.17 16 4 C 0.26 5.80 5.10 -5.20 -0.03 5.77 16 5 C -0.53 -13.88 9.38 -34.44 -0.32 -14.20 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 S 2.68 46.69 5.64 -107.50 -0.61 46.08 16 14 O -0.93 -19.88 16.25 -57.17 -0.93 -20.80 16 15 O -0.97 -17.23 15.83 -57.17 -0.91 -18.14 16 16 C -0.67 -8.95 5.98 -39.55 -0.24 -9.18 16 17 C 0.00 0.02 8.41 -39.61 -0.33 -0.32 16 18 C -0.15 -1.20 9.49 -39.41 -0.37 -1.58 16 19 C 0.17 1.75 6.70 -83.56 -0.56 1.19 16 20 N -0.33 -3.41 3.85 -11.74 -0.05 -3.45 16 21 C 0.23 1.83 12.16 -90.16 -1.10 0.73 16 22 N -0.33 -3.71 12.15 29.64 0.36 -3.35 16 23 N -0.03 -0.44 13.39 60.35 0.81 0.37 16 24 N -0.07 -0.89 13.34 60.35 0.80 -0.08 16 25 C -0.12 -1.41 9.70 -39.40 -0.38 -1.79 16 26 C 0.01 0.12 9.51 -39.61 -0.38 -0.26 16 27 H 0.05 0.48 7.00 -51.93 -0.36 0.12 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.08 1.09 6.91 -51.93 -0.36 0.73 16 32 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.04 0.92 7.61 -51.92 -0.40 0.52 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.15 1.32 7.61 -52.49 -0.40 0.92 16 36 H 0.14 0.56 6.88 -52.49 -0.36 0.20 16 37 H 0.24 0.52 7.19 -52.49 -0.38 0.14 16 38 H 0.15 1.60 7.77 -52.49 -0.41 1.19 16 39 H 0.16 2.11 7.61 -52.49 -0.40 1.71 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -33.61 353.11 -7.54 -41.15 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.30 Total: -2.64 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.45 Total: -18.04 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 2.34 Total: -48.80 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.83 Total: -38.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.61 Total: 46.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.61 -7.54 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264080202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.422 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds