Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47015 * 2 1 4 4 C 1.46499 * 119.99892 * 274.99947 * 3 2 1 5 5 C 1.50696 * 109.47261 * 274.99916 * 4 3 2 6 6 H 1.08000 * 120.00308 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99926 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46942 * 90.00144 * 9 7 5 11 11 H 1.48499 * 109.47196 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47194 * 330.00289 * 9 7 5 13 13 S 1.65599 * 119.99695 * 95.00201 * 3 2 1 14 14 O 1.42098 * 106.40019 * 156.45953 * 13 3 2 15 15 O 1.42104 * 106.40408 * 23.54182 * 13 3 2 16 16 C 1.76201 * 107.21727 * 269.99827 * 13 3 2 17 17 C 1.38282 * 119.93179 * 90.00489 * 16 13 3 18 18 C 1.38122 * 120.06286 * 180.25689 * 17 16 13 19 19 C 1.38817 * 119.93409 * 359.48623 * 18 17 16 20 20 N 1.40264 * 120.06538 * 180.26125 * 19 18 17 21 21 C 1.35065 * 127.39102 * 359.93330 * 20 19 18 22 22 N 1.30732 * 107.27778 * 179.84603 * 21 20 19 23 23 N 1.28420 * 110.64472 * 0.44127 * 22 21 20 24 24 N 1.28950 * 110.20404 * 359.72698 * 23 22 21 25 25 C 1.38829 * 119.87191 * 0.49096 * 19 18 17 26 26 C 1.38126 * 119.93049 * 359.76207 * 25 19 18 27 27 H 1.08995 * 109.47049 * 299.99626 * 1 2 3 28 28 H 1.09004 * 109.47506 * 59.99982 * 1 2 3 29 29 H 1.09006 * 109.46598 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47390 * 240.00531 * 2 1 3 31 31 H 1.08997 * 109.47352 * 120.00402 * 2 1 3 32 32 H 1.09005 * 109.46965 * 35.00331 * 4 3 2 33 33 H 1.09008 * 109.46744 * 154.99980 * 4 3 2 34 34 H 0.97003 * 119.99253 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.96624 * 359.97137 * 17 16 13 36 36 H 1.07998 * 120.03531 * 179.74058 * 18 17 16 37 37 H 1.08001 * 126.35438 * 359.96765 * 21 20 19 38 38 H 1.07997 * 120.03315 * 179.79219 * 25 19 18 39 39 H 1.07997 * 119.96520 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3840 7 6 3.8528 2.3615 -3.0844 8 7 3.0282 3.1872 -3.6910 9 14 5.5098 1.9657 -3.8506 10 1 5.3747 0.7828 -4.7383 11 1 5.9786 3.1296 -4.6449 12 1 6.4932 1.6699 -2.7780 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7096 1.0798 2.3499 16 6 0.9555 2.9118 2.0254 17 6 0.0884 2.2259 2.8560 18 6 -1.0570 2.8420 3.3210 19 6 -1.3319 4.1546 2.9624 20 7 -2.4914 4.7848 3.4375 21 6 -3.4381 4.2595 4.2451 22 7 -4.3387 5.1865 4.4416 23 7 -4.0307 6.2591 3.8061 24 7 -2.9207 6.0967 3.1702 25 6 -0.4593 4.8408 2.1288 26 6 0.6819 4.2177 1.6626 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0921 3.1804 -1.0755 34 1 3.2803 3.5903 -4.5365 35 1 0.3046 1.2059 3.1376 36 1 -1.7360 2.3045 3.9663 37 1 -3.4481 3.2600 4.6541 38 1 -0.6723 5.8610 1.8454 39 1 1.3609 4.7509 1.0138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264080202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = 61.030826 kcal Electronic energy + Delta-G solvation = -26735.663838 eV Core-core repulsion = 22807.924554 eV Total energy + Delta-G solvation = -3927.739284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.42258 -40.69463 -38.32899 -37.67980 -36.87244 -36.41373 -34.69377 -33.60895 -32.39086 -31.57918 -31.45572 -28.49208 -26.54247 -25.25730 -24.91555 -23.64903 -23.12503 -22.99735 -20.09710 -19.92633 -19.07436 -18.31791 -18.17452 -17.83393 -17.38746 -17.24843 -16.63849 -16.15024 -15.76197 -15.41221 -15.00473 -14.83619 -14.81270 -14.63298 -14.59529 -14.40949 -13.81512 -13.59848 -13.56417 -13.33325 -13.13318 -13.03357 -12.97407 -12.72528 -12.66967 -12.50850 -12.31182 -12.21044 -12.14496 -11.96681 -11.75144 -11.72037 -11.56390 -10.57311 -10.36403 -10.24869 -9.77304 -8.18683 -6.29599 -1.13673 -0.56197 -0.00782 0.17349 0.53229 1.07794 1.40491 1.43139 1.53022 1.95837 2.31888 2.42906 2.81938 2.86516 3.13104 3.20303 3.24620 3.51953 3.67228 3.77735 4.00241 4.02999 4.08764 4.22089 4.28656 4.49425 4.53169 4.57695 4.68990 4.74928 4.78876 4.92766 5.09086 5.12252 5.19490 5.21727 5.45669 5.50939 5.55233 5.73957 5.95085 6.12609 6.79033 7.14687 7.39285 8.88635 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003158 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.097822 B = 8863.863541 C = 9415.192107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.986 5.986 4 C 0.272 3.728 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.273 1.273 13 S 2.689 3.311 14 O -0.988 6.988 15 O -0.976 6.976 16 C -0.671 4.671 17 C 0.004 3.996 18 C -0.119 4.119 19 C 0.177 3.823 20 N -0.337 5.337 21 C 0.256 3.744 22 N -0.355 5.355 23 N -0.054 5.054 24 N -0.100 5.100 25 C -0.131 4.131 26 C -0.009 4.009 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.181 0.819 36 H 0.202 0.798 37 H 0.303 0.697 38 H 0.148 0.852 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -5.971 15.586 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.825 5.825 4 C 0.148 3.852 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.198 1.198 13 S 2.781 3.219 14 O -0.978 6.978 15 O -0.967 6.967 16 C -0.760 4.760 17 C -0.016 4.016 18 C -0.140 4.140 19 C 0.084 3.916 20 N -0.127 5.127 21 C -0.039 4.039 22 N -0.204 5.204 23 N -0.049 5.049 24 N -0.085 5.085 25 C -0.152 4.152 26 C -0.029 4.029 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.199 0.801 36 H 0.219 0.781 37 H 0.318 0.682 38 H 0.166 0.834 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.205 -4.537 15.680 20.382 hybrid contribution 0.939 -0.002 -1.087 1.436 sum -11.266 -4.539 14.593 18.986 Atomic orbital electron populations 1.22240 0.94540 1.03641 1.02207 1.21504 0.95410 0.80957 1.04164 1.57303 1.81779 1.22582 1.20810 1.18625 0.95847 0.90523 0.80181 1.21841 1.03308 1.27479 1.05876 0.92706 1.25695 1.00606 0.94783 0.97533 1.70008 1.37721 1.31008 1.17672 0.85637 0.80022 0.78110 0.78465 1.19207 1.20728 1.19761 1.01751 0.74579 0.73026 0.72537 1.93559 1.61172 1.59167 1.83941 1.93488 1.83747 1.56547 1.62902 1.31149 1.24062 1.06828 1.13987 1.21194 0.90072 1.00655 0.89674 1.21433 0.99278 0.90923 1.02339 1.17963 0.83909 0.93025 0.96709 1.49204 1.18213 1.10635 1.34651 1.28696 0.82709 1.03211 0.89298 1.74457 1.26116 0.97480 1.22323 1.78117 1.05402 1.17645 1.03747 1.82728 1.09453 0.95347 1.20973 1.21082 0.94011 1.01786 0.98350 1.20890 0.95201 0.92415 0.94364 0.91563 0.93533 0.88981 0.90585 0.88573 0.95222 0.96321 0.92492 0.80141 0.78078 0.68230 0.83446 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.10 3.04 6.40 86.38 0.55 3.59 16 3 N -0.99 -36.71 2.77 -519.83 -1.44 -38.15 16 4 C 0.27 12.92 5.10 85.63 0.44 13.35 16 5 C -0.55 -29.58 9.38 25.60 0.24 -29.34 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.73 5.46 84.65 0.46 1.20 16 8 N -0.92 -52.87 13.29 21.45 0.28 -52.59 16 9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 S 2.69 94.93 5.64 -56.49 -0.32 94.61 16 14 O -0.99 -44.47 16.25 -128.00 -2.08 -46.55 16 15 O -0.98 -33.74 15.83 -128.00 -2.03 -35.76 16 16 C -0.67 -17.38 5.98 22.29 0.13 -17.25 16 17 C 0.00 0.06 8.41 22.25 0.19 0.25 16 18 C -0.12 -1.27 9.49 22.38 0.21 -1.06 16 19 C 0.18 3.01 6.70 38.07 0.26 3.27 16 20 N -0.34 -5.82 3.85 -191.06 -0.74 -6.55 16 21 C 0.26 2.80 12.16 180.19 2.19 4.99 16 22 N -0.36 -6.98 12.15 -60.14 -0.73 -7.71 16 23 N -0.05 -1.36 13.39 37.02 0.50 -0.87 16 24 N -0.10 -2.44 13.34 37.02 0.49 -1.94 16 25 C -0.13 -2.95 9.70 22.38 0.22 -2.73 16 26 C -0.01 -0.23 9.51 22.25 0.21 -0.02 16 27 H 0.07 1.14 7.00 -2.39 -0.02 1.13 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.08 2.39 8.11 -2.39 -0.02 2.37 16 31 H 0.10 2.46 6.91 -2.39 -0.02 2.44 16 32 H 0.03 1.44 8.11 -2.38 -0.02 1.42 16 33 H 0.02 0.96 7.61 -2.38 -0.02 0.94 16 34 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.18 2.09 7.61 -2.91 -0.02 2.06 16 36 H 0.20 -0.25 6.88 -2.91 -0.02 -0.27 16 37 H 0.30 -1.15 7.19 -2.91 -0.02 -1.18 16 38 H 0.15 3.28 7.77 -2.91 -0.02 3.25 16 39 H 0.14 4.15 7.61 -2.91 -0.02 4.13 16 Total: -1.00 -78.49 353.11 2.90 -75.59 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.09 Total: 0.98 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 5.84 Total: -26.63 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -1.63 Total: -107.81 kcal Atomic # 8 Polarization: -78.21 SS G_CDS: -4.11 Total: -82.31 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 94.93 SS G_CDS: -0.32 Total: 94.61 kcal Total: -78.49 2.90 -75.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264080202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.625 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds