Wall clock time and date at job start Tue Mar 31 2020 20:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 C 1.50705 * 109.46823 * 120.00030 * 2 1 3 5 5 H 1.08002 * 120.00223 * 120.00143 * 4 2 1 6 6 C 1.37875 * 119.99961 * 299.99281 * 4 2 1 7 7 N 1.31522 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46921 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47073 * 120.00627 * 8 6 4 11 11 H 1.48500 * 109.46870 * 240.00438 * 8 6 4 12 12 N 1.46501 * 109.47359 * 239.99494 * 2 1 3 13 13 C 1.46501 * 119.99864 * 300.00219 * 12 2 1 14 14 S 1.65599 * 119.99998 * 120.00204 * 12 2 1 15 15 O 1.42106 * 106.40227 * 336.45826 * 14 12 2 16 16 O 1.42100 * 106.40324 * 203.54339 * 14 12 2 17 17 C 1.76199 * 107.21905 * 90.00171 * 14 12 2 18 18 C 1.38268 * 119.93298 * 269.72703 * 17 14 12 19 19 C 1.38136 * 120.06188 * 179.72640 * 18 17 14 20 20 C 1.38814 * 119.93304 * 0.57048 * 19 18 17 21 21 N 1.40264 * 120.06427 * 179.68383 * 20 19 18 22 22 C 1.35060 * 127.38688 * 359.72893 * 21 20 19 23 23 N 1.30738 * 107.27612 * 179.90102 * 22 21 20 24 24 N 1.28429 * 110.64092 * 0.37695 * 23 22 21 25 25 N 1.28938 * 110.20447 * 359.76402 * 24 23 22 26 26 C 1.38820 * 119.87270 * 359.70063 * 20 19 18 27 27 C 1.38133 * 119.93082 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46918 * 300.00140 * 1 2 3 30 30 H 1.09004 * 109.46893 * 60.00486 * 1 2 3 31 31 H 0.96999 * 120.00093 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47167 * 269.99576 * 13 12 2 33 33 H 1.09002 * 109.47465 * 30.00110 * 13 12 2 34 34 H 1.09005 * 109.46555 * 149.99757 * 13 12 2 35 35 H 1.07995 * 119.97397 * 0.02562 * 18 17 14 36 36 H 1.08005 * 120.03037 * 180.29461 * 19 18 17 37 37 H 1.08000 * 126.36790 * 359.97438 * 22 21 20 38 38 H 1.08000 * 120.03304 * 180.02562 * 26 20 19 39 39 H 1.07998 * 119.96463 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9705 0.1140 -2.2862 15 8 2.6904 1.4971 -2.1193 16 8 2.8229 -0.5648 -3.5258 17 6 4.6445 -0.1184 -1.7879 18 6 5.2383 0.7822 -0.9230 19 6 6.5488 0.5995 -0.5262 20 6 7.2733 -0.4830 -1.0060 21 7 8.6062 -0.6675 -0.6101 22 6 9.3302 0.1127 0.2213 23 7 10.5193 -0.4220 0.3182 24 7 10.5988 -1.4827 -0.4015 25 7 9.4769 -1.7009 -0.9984 26 6 6.6762 -1.3824 -1.8787 27 6 5.3636 -1.1976 -2.2675 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7089 1.1615 3.4844 32 1 2.4157 -2.7378 -0.9715 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2853 -2.5000 35 1 4.6756 1.6267 -0.5534 36 1 7.0106 1.3007 0.1532 37 1 8.9898 1.0107 0.7155 38 1 7.2373 -2.2258 -2.2532 39 1 4.8987 -1.8968 -2.9467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264106626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:17 Heat of formation + Delta-G solvation = 88.162118 kcal Electronic energy + Delta-G solvation = -27027.741655 eV Core-core repulsion = 23101.178872 eV Total energy + Delta-G solvation = -3926.562783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53534 -39.70527 -36.94464 -36.33438 -35.55013 -35.40478 -32.74845 -32.71774 -31.40404 -30.56551 -29.21368 -25.79503 -25.54272 -25.27143 -24.32531 -22.58991 -22.07788 -20.87627 -19.08122 -18.80670 -17.49456 -16.96552 -16.89787 -16.56262 -16.53207 -15.88580 -15.19895 -14.83712 -14.59694 -13.99248 -13.87642 -13.81160 -13.65153 -13.52833 -13.25759 -12.94696 -12.64202 -12.15137 -11.97111 -11.93715 -11.77928 -11.53706 -11.49937 -11.41097 -11.29086 -11.13969 -10.95674 -10.85707 -10.84605 -10.55671 -10.38075 -10.16575 -9.43116 -9.39980 -9.21002 -8.61694 -8.12816 -6.22694 -4.31669 -0.18552 0.77115 0.96186 1.14741 1.38098 1.92275 3.07565 3.13525 3.23702 3.25628 3.50949 3.67786 3.88211 4.09553 4.24056 4.33896 4.41754 4.50149 4.82148 4.98587 4.99191 5.08062 5.09344 5.26660 5.45785 5.53832 5.61054 5.78933 5.90424 6.00283 6.04689 6.19707 6.44590 6.49519 6.70463 6.75679 6.95672 7.28477 7.48873 7.64007 7.90353 8.03225 8.11341 8.72356 9.35885 10.82097 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004430 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.189071 B = 6318.886195 C = 8046.389854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.976 5.976 13 C 0.095 3.905 14 S 2.684 3.316 15 O -0.953 6.953 16 O -0.971 6.971 17 C -0.660 4.660 18 C 0.019 3.981 19 C -0.141 4.141 20 C 0.172 3.828 21 N -0.330 5.330 22 C 0.233 3.767 23 N -0.331 5.331 24 N -0.035 5.035 25 N -0.073 5.073 26 C -0.127 4.127 27 C 0.000 4.000 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.242 0.758 38 H 0.147 0.853 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -0.880 -6.191 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.817 5.817 13 C -0.051 4.051 14 S 2.772 3.228 15 O -0.943 6.943 16 O -0.961 6.961 17 C -0.744 4.744 18 C 0.000 4.000 19 C -0.163 4.163 20 C 0.079 3.921 21 N -0.120 5.120 22 C -0.064 4.064 23 N -0.179 5.179 24 N -0.030 5.030 25 N -0.058 5.058 26 C -0.148 4.148 27 C -0.019 4.019 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.258 0.742 38 H 0.165 0.835 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.804 -1.282 -7.021 11.333 hybrid contribution 0.162 -0.209 1.712 1.732 sum 8.966 -1.490 -5.309 10.526 Atomic orbital electron populations 1.22076 0.97592 0.99856 1.01066 1.18838 0.92122 0.92772 0.79997 0.92058 1.21414 1.32077 1.13213 0.90096 0.91881 1.24891 0.94872 0.94912 0.98912 1.69877 1.36028 1.22520 1.23862 0.86536 0.78786 0.79672 0.82982 1.19887 1.20948 1.20800 1.57400 1.62451 1.21846 1.39997 1.21361 1.02235 0.81266 1.00249 1.02243 0.73190 0.73915 0.73426 1.93577 1.83363 1.31118 1.86283 1.93521 1.85804 1.75700 1.41103 1.31673 1.27650 1.04089 1.11016 1.20887 0.92913 0.96456 0.89792 1.20971 0.95482 0.97253 1.02617 1.17812 0.78877 0.97390 0.98009 1.49184 1.11212 1.19110 1.32483 1.27554 0.87844 0.98702 0.92276 1.74515 1.17512 1.05753 1.20146 1.78086 1.13570 1.08306 1.03020 1.82678 0.95555 1.07596 1.19998 1.21009 0.95939 0.99635 0.98239 1.20865 0.92508 0.94179 0.94380 0.94656 0.88672 0.96576 0.92562 0.93613 0.90093 0.91640 0.82279 0.83904 0.74168 0.83519 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.27 5.82 2.62 -69.08 -0.18 5.64 16 3 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 4 C -0.53 -12.48 8.37 -34.44 -0.29 -12.77 16 5 H 0.06 1.48 7.65 -52.49 -0.40 1.08 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.88 -22.62 11.32 55.43 0.63 -22.00 16 8 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 N -0.98 -17.90 3.06 -115.85 -0.35 -18.25 16 13 C 0.09 1.48 9.90 59.85 0.59 2.08 16 14 S 2.68 45.74 5.69 -107.50 -0.61 45.13 16 15 O -0.95 -18.66 15.83 -57.17 -0.91 -19.56 16 16 O -0.97 -17.02 15.88 -57.17 -0.91 -17.93 16 17 C -0.66 -9.55 5.98 -39.56 -0.24 -9.79 16 18 C 0.02 0.26 9.51 -39.61 -0.38 -0.12 16 19 C -0.14 -1.55 9.49 -39.41 -0.37 -1.92 16 20 C 0.17 2.01 6.70 -83.57 -0.56 1.45 16 21 N -0.33 -3.85 3.85 -11.74 -0.05 -3.90 16 22 C 0.23 2.24 12.16 -90.16 -1.10 1.15 16 23 N -0.33 -4.14 12.15 29.64 0.36 -3.78 16 24 N -0.03 -0.49 13.39 60.35 0.81 0.32 16 25 N -0.07 -0.99 13.34 60.35 0.80 -0.19 16 26 C -0.13 -1.51 9.70 -39.40 -0.38 -1.89 16 27 C 0.00 0.00 9.51 -39.61 -0.38 -0.37 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 34 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 35 H 0.16 2.09 7.61 -52.49 -0.40 1.69 16 36 H 0.14 1.01 6.89 -52.48 -0.36 0.65 16 37 H 0.24 1.04 7.19 -52.49 -0.38 0.66 16 38 H 0.15 1.53 7.77 -52.49 -0.41 1.13 16 39 H 0.15 1.64 7.61 -52.49 -0.40 1.24 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -30.78 345.96 -7.12 -37.90 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.04 Total: 0.55 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -3.04 Total: -17.83 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 2.20 Total: -47.80 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.81 Total: -37.49 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.61 Total: 45.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.78 -7.12 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264106626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.062 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds