Wall clock time and date at job start Tue Mar 31 2020 20:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 C 1.50705 * 109.46823 * 120.00030 * 2 1 3 5 5 H 1.08002 * 120.00223 * 120.00143 * 4 2 1 6 6 C 1.37875 * 119.99961 * 299.99281 * 4 2 1 7 7 N 1.31522 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46921 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47073 * 120.00627 * 8 6 4 11 11 H 1.48500 * 109.46870 * 240.00438 * 8 6 4 12 12 N 1.46501 * 109.47359 * 239.99494 * 2 1 3 13 13 C 1.46501 * 119.99864 * 300.00219 * 12 2 1 14 14 S 1.65599 * 119.99998 * 120.00204 * 12 2 1 15 15 O 1.42106 * 106.40227 * 336.45826 * 14 12 2 16 16 O 1.42100 * 106.40324 * 203.54339 * 14 12 2 17 17 C 1.76199 * 107.21905 * 90.00171 * 14 12 2 18 18 C 1.38268 * 119.93298 * 269.72703 * 17 14 12 19 19 C 1.38136 * 120.06188 * 179.72640 * 18 17 14 20 20 C 1.38814 * 119.93304 * 0.57048 * 19 18 17 21 21 N 1.40264 * 120.06427 * 179.68383 * 20 19 18 22 22 C 1.35060 * 127.38688 * 359.72893 * 21 20 19 23 23 N 1.30738 * 107.27612 * 179.90102 * 22 21 20 24 24 N 1.28429 * 110.64092 * 0.37695 * 23 22 21 25 25 N 1.28938 * 110.20447 * 359.76402 * 24 23 22 26 26 C 1.38820 * 119.87270 * 359.70063 * 20 19 18 27 27 C 1.38133 * 119.93082 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46918 * 300.00140 * 1 2 3 30 30 H 1.09004 * 109.46893 * 60.00486 * 1 2 3 31 31 H 0.96999 * 120.00093 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47167 * 269.99576 * 13 12 2 33 33 H 1.09002 * 109.47465 * 30.00110 * 13 12 2 34 34 H 1.09005 * 109.46555 * 149.99757 * 13 12 2 35 35 H 1.07995 * 119.97397 * 0.02562 * 18 17 14 36 36 H 1.08005 * 120.03037 * 180.29461 * 19 18 17 37 37 H 1.08000 * 126.36790 * 359.97438 * 22 21 20 38 38 H 1.08000 * 120.03304 * 180.02562 * 26 20 19 39 39 H 1.07998 * 119.96463 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9705 0.1140 -2.2862 15 8 2.6904 1.4971 -2.1193 16 8 2.8229 -0.5648 -3.5258 17 6 4.6445 -0.1184 -1.7879 18 6 5.2383 0.7822 -0.9230 19 6 6.5488 0.5995 -0.5262 20 6 7.2733 -0.4830 -1.0060 21 7 8.6062 -0.6675 -0.6101 22 6 9.3302 0.1127 0.2213 23 7 10.5193 -0.4220 0.3182 24 7 10.5988 -1.4827 -0.4015 25 7 9.4769 -1.7009 -0.9984 26 6 6.6762 -1.3824 -1.8787 27 6 5.3636 -1.1976 -2.2675 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7089 1.1615 3.4844 32 1 2.4157 -2.7378 -0.9715 33 1 0.6904 -2.3003 -0.9845 34 1 1.6238 -2.2853 -2.5000 35 1 4.6756 1.6267 -0.5534 36 1 7.0106 1.3007 0.1532 37 1 8.9898 1.0107 0.7155 38 1 7.2373 -2.2258 -2.2532 39 1 4.8987 -1.8968 -2.9467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264106626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:15 Heat of formation + Delta-G solvation = 68.425205 kcal Electronic energy + Delta-G solvation = -27028.597512 eV Core-core repulsion = 23101.178872 eV Total energy + Delta-G solvation = -3927.418640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.43640 -40.65343 -38.36104 -37.88760 -36.91789 -36.40167 -34.49690 -33.62017 -32.34140 -31.53291 -30.87812 -27.28784 -26.96139 -26.51514 -25.24513 -23.55552 -23.00725 -22.51887 -20.13728 -19.91272 -18.82827 -18.31965 -18.29025 -17.84682 -17.33609 -17.17213 -16.65210 -16.04634 -15.75671 -15.22986 -15.09468 -14.81119 -14.75507 -14.61111 -14.52532 -14.43596 -13.65560 -13.60735 -13.41918 -13.19427 -13.15360 -12.95571 -12.92228 -12.74656 -12.59268 -12.48330 -12.33892 -12.21551 -12.12997 -12.03340 -11.82527 -11.76079 -11.09664 -10.47877 -10.33430 -10.22839 -9.63127 -8.07525 -6.21148 -1.12372 -0.53321 0.03154 0.18211 0.51092 1.04769 1.42635 1.48564 1.55604 1.96312 2.30752 2.46817 2.78929 2.85937 3.17612 3.21507 3.24934 3.52795 3.66089 3.78742 4.02810 4.08170 4.16505 4.24246 4.29758 4.58086 4.71406 4.78782 4.82605 4.85099 4.94767 5.02464 5.07467 5.11484 5.20839 5.21370 5.52392 5.64957 5.75441 5.88284 6.11925 6.32297 6.88364 7.12407 7.48771 8.96779 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004430 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.189071 B = 6318.886195 C = 8046.389854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.271 3.729 3 H 0.038 0.962 4 C -0.527 4.527 5 H 0.065 0.935 6 C 0.025 3.975 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.286 1.286 12 N -0.986 5.986 13 C 0.088 3.912 14 S 2.695 3.305 15 O -0.986 6.986 16 O -0.979 6.979 17 C -0.671 4.671 18 C 0.002 3.998 19 C -0.129 4.129 20 C 0.173 3.827 21 N -0.335 5.335 22 C 0.252 3.748 23 N -0.353 5.353 24 N -0.053 5.053 25 N -0.092 5.092 26 C -0.129 4.129 27 C -0.002 4.002 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.186 0.814 37 H 0.293 0.707 38 H 0.159 0.841 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -1.341 -5.764 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.167 3.833 3 H 0.056 0.944 4 C -0.566 4.566 5 H 0.083 0.917 6 C -0.175 4.175 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.212 1.212 12 N -0.825 5.825 13 C -0.057 4.057 14 S 2.788 3.212 15 O -0.976 6.976 16 O -0.970 6.970 17 C -0.759 4.759 18 C -0.018 4.018 19 C -0.150 4.150 20 C 0.080 3.920 21 N -0.125 5.125 22 C -0.044 4.044 23 N -0.202 5.202 24 N -0.048 5.048 25 N -0.077 5.077 26 C -0.150 4.150 27 C -0.021 4.021 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.203 0.797 37 H 0.308 0.692 38 H 0.177 0.823 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.193 -1.758 -6.618 12.279 hybrid contribution -0.191 -0.053 1.540 1.553 sum 10.002 -1.811 -5.078 11.362 Atomic orbital electron populations 1.21981 0.97785 1.00204 1.00275 1.18499 0.92024 0.91834 0.80976 0.94447 1.21626 1.31403 1.12919 0.90663 0.91713 1.25511 0.95232 0.95494 1.01255 1.69993 1.37244 1.23776 1.24202 0.85689 0.78069 0.78717 0.80175 1.19498 1.20847 1.21170 1.57278 1.63663 1.22752 1.38803 1.21551 1.02458 0.80026 1.01647 1.01556 0.73822 0.72890 0.72925 1.93531 1.84451 1.33033 1.86623 1.93501 1.86476 1.75608 1.41378 1.31178 1.25893 1.05902 1.12955 1.21013 0.94227 0.96423 0.90171 1.21292 0.94219 0.97335 1.02154 1.17933 0.78940 0.97420 0.97665 1.49189 1.11079 1.19252 1.33002 1.28564 0.86485 0.98867 0.90473 1.74475 1.19172 1.05853 1.20693 1.78082 1.14006 1.09167 1.03594 1.82645 0.95807 1.08656 1.20632 1.21183 0.95635 1.00087 0.98102 1.21029 0.92829 0.93812 0.94473 0.93686 0.91041 0.95776 0.92707 0.92397 0.90414 0.89765 0.82700 0.79687 0.69164 0.82348 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 8.95 71.98 0.64 -5.61 16 2 C 0.27 11.93 2.62 44.25 0.12 12.05 16 3 H 0.04 1.83 6.91 -2.39 -0.02 1.82 16 4 C -0.53 -24.59 8.37 25.60 0.21 -24.38 16 5 H 0.06 2.95 7.65 -2.91 -0.02 2.93 16 6 C 0.03 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -47.04 11.32 21.45 0.24 -46.79 16 8 Si 0.95 39.05 29.54 68.60 2.03 41.08 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 12 N -0.99 -35.69 3.06 -520.43 -1.59 -37.29 16 13 C 0.09 2.65 9.90 127.77 1.26 3.92 16 14 S 2.70 91.10 5.69 -56.49 -0.32 90.78 16 15 O -0.99 -39.26 15.83 -128.00 -2.03 -41.28 16 16 O -0.98 -33.56 15.88 -128.00 -2.03 -35.60 16 17 C -0.67 -18.62 5.98 22.28 0.13 -18.49 16 18 C 0.00 0.04 9.51 22.25 0.21 0.25 16 19 C -0.13 -2.38 9.49 22.38 0.21 -2.17 16 20 C 0.17 3.54 6.70 38.07 0.26 3.79 16 21 N -0.34 -6.82 3.85 -191.07 -0.74 -7.55 16 22 C 0.25 3.91 12.16 180.19 2.19 6.10 16 23 N -0.35 -8.02 12.15 -60.14 -0.73 -8.75 16 24 N -0.05 -1.43 13.39 37.02 0.50 -0.93 16 25 N -0.09 -2.33 13.34 37.02 0.49 -1.84 16 26 C -0.13 -2.76 9.70 22.38 0.22 -2.54 16 27 C 0.00 -0.04 9.51 22.25 0.21 0.17 16 28 H 0.04 1.82 6.66 -2.39 -0.02 1.80 16 29 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.36 6.43 -2.39 -0.02 2.34 16 34 H 0.08 2.19 7.02 -2.38 -0.02 2.17 16 35 H 0.16 3.99 7.61 -2.91 -0.02 3.97 16 36 H 0.19 1.68 6.89 -2.91 -0.02 1.66 16 37 H 0.29 0.87 7.19 -2.91 -0.02 0.85 16 38 H 0.16 2.97 7.77 -2.91 -0.02 2.95 16 39 H 0.17 3.28 7.61 -2.91 -0.02 3.26 16 Total: -1.00 -66.66 345.96 3.04 -63.62 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.10 Total: 9.79 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 6.12 Total: -25.24 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -1.83 Total: -103.15 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -4.06 Total: -76.88 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 91.10 SS G_CDS: -0.32 Total: 90.78 kcal Total: -66.66 3.04 -63.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264106626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.048 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds