Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47080 * 2 1 4 4 C 1.50699 * 109.46745 * 119.99559 * 2 1 3 5 5 H 1.07997 * 120.00297 * 120.00347 * 4 2 1 6 6 C 1.37882 * 120.00276 * 299.99674 * 4 2 1 7 7 N 1.31518 * 119.99746 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00436 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46711 * 60.00051 * 8 6 4 10 10 H 1.48496 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46981 * 300.00412 * 8 6 4 12 12 N 1.46495 * 109.47339 * 239.98935 * 2 1 3 13 13 C 1.34780 * 119.99432 * 85.00458 * 12 2 1 14 14 O 1.21558 * 120.00283 * 359.97438 * 13 12 2 15 15 C 1.47785 * 119.99772 * 180.02562 * 13 12 2 16 16 C 1.39551 * 120.12478 * 359.72129 * 15 13 12 17 17 C 1.38530 * 119.79183 * 179.74661 * 16 15 13 18 18 N 1.40029 * 119.98027 * 180.25214 * 17 16 15 19 19 C 1.47049 * 125.40974 * 354.20069 * 18 17 16 20 20 C 1.54108 * 103.86269 * 179.86622 * 19 18 17 21 21 N 1.47052 * 103.86072 * 0.37860 * 20 19 18 22 22 C 1.33949 * 125.40972 * 174.50415 * 18 17 16 23 23 O 1.21585 * 123.04280 * 359.97438 * 22 18 17 24 24 C 1.39017 * 120.04102 * 0.50897 * 17 16 15 25 25 C 1.38158 * 120.24531 * 359.76850 * 24 17 16 26 26 C 1.38180 * 120.20976 * 359.97438 * 25 24 17 27 27 Cl 1.73602 * 120.02110 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47631 * 300.00284 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47096 * 60.00750 * 1 2 3 31 31 H 0.96999 * 120.00015 * 179.97438 * 7 6 4 32 32 H 0.96993 * 120.01152 * 265.00458 * 12 2 1 33 33 H 1.07995 * 120.09878 * 0.02562 * 16 15 13 34 34 H 1.08997 * 110.54941 * 298.59490 * 19 18 17 35 35 H 1.09005 * 110.54544 * 61.40242 * 19 18 17 36 36 H 1.08993 * 110.75737 * 241.67630 * 20 19 18 37 37 H 1.09007 * 110.33529 * 118.86854 * 20 19 18 38 38 H 0.97002 * 125.41130 * 179.75129 * 21 20 19 39 39 H 1.07996 * 119.87514 * 179.74086 * 24 17 16 40 40 H 1.08004 * 119.89971 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3223 -1.1192 4.0082 9 1 3.8072 -1.1187 4.0079 10 1 1.8267 -0.4194 5.2205 11 1 1.8278 -2.5194 4.0085 12 7 2.0183 -0.6908 -1.1960 13 6 2.1471 -0.0185 -2.3570 14 8 1.8576 1.1608 -2.4119 15 6 2.6392 -0.7155 -3.5637 16 6 2.9768 -2.0681 -3.5025 17 6 3.4325 -2.7159 -4.6392 18 7 3.7673 -4.0744 -4.5835 19 6 3.7967 -4.8955 -3.3639 20 6 4.2184 -6.2896 -3.8674 21 7 4.3909 -6.1037 -5.3159 22 6 4.1173 -4.8311 -5.6319 23 8 4.1803 -4.4018 -6.7677 24 6 3.5625 -2.0168 -5.8337 25 6 3.2342 -0.6762 -5.8947 26 6 2.7737 -0.0212 -4.7685 27 17 2.3633 1.6637 -4.8505 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 0.7080 1.1612 3.4843 32 1 2.2490 -1.6319 -1.1525 33 1 2.8789 -2.6093 -2.5731 34 1 4.5283 -4.5043 -2.6569 35 1 2.8076 -4.9386 -2.9079 36 1 3.4396 -7.0249 -3.6660 37 1 5.1588 -6.5906 -3.4056 38 1 4.6601 -6.7931 -5.9429 39 1 3.9219 -2.5234 -6.7171 40 1 3.3378 -0.1383 -6.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266095272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = -12.826158 kcal Electronic energy + Delta-G solvation = -26476.378474 eV Core-core repulsion = 22511.100053 eV Total energy + Delta-G solvation = -3965.278421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83099 -39.69899 -38.01508 -36.90982 -36.19130 -34.81540 -34.33639 -32.58529 -31.31326 -30.00255 -28.99760 -28.62413 -25.28240 -24.53861 -23.84217 -22.62046 -21.70075 -20.38212 -19.46739 -18.48482 -17.75499 -17.13710 -16.88339 -16.36433 -15.79323 -15.35960 -15.11595 -14.79251 -14.47522 -14.37831 -14.25576 -14.20573 -13.92559 -13.49346 -13.10583 -12.77528 -12.74657 -12.48488 -12.34298 -11.78200 -11.67011 -11.53074 -11.14994 -10.98406 -10.86273 -10.64249 -10.33781 -10.26543 -10.24727 -10.12369 -9.62300 -9.11283 -9.05989 -8.84662 -8.56349 -8.02067 -7.86737 -6.14189 -4.23966 0.86113 1.06096 1.97994 2.46058 2.65379 3.22448 3.27366 3.28650 3.29184 3.34340 3.84931 3.94691 4.05251 4.31842 4.40673 4.43585 4.69009 4.88587 4.93489 5.07405 5.17864 5.19875 5.24052 5.33181 5.44127 5.74127 5.85777 6.11696 6.20047 6.20782 6.61262 6.76408 6.82753 6.96879 7.01010 7.14123 7.43410 7.53633 7.66526 7.90098 8.07904 8.13324 8.61314 8.75056 9.07376 9.43368 10.91719 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003797 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.989985 B = 7373.186729 C = 9888.355650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.537 3.463 14 O -0.522 6.522 15 C -0.086 4.086 16 C -0.118 4.118 17 C 0.182 3.818 18 N -0.568 5.568 19 C 0.079 3.921 20 C 0.093 3.907 21 N -0.736 5.736 22 C 0.701 3.299 23 O -0.569 6.569 24 C -0.128 4.128 25 C -0.092 4.092 26 C -0.015 4.015 27 Cl -0.033 7.033 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.433 0.567 39 H 0.167 0.833 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -14.763 -13.723 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.321 3.679 14 O -0.400 6.400 15 C -0.091 4.091 16 C -0.140 4.140 17 C 0.088 3.912 18 N -0.295 5.295 19 C -0.044 4.044 20 C -0.032 4.032 21 N -0.398 5.398 22 C 0.402 3.598 23 O -0.446 6.446 24 C -0.148 4.148 25 C -0.111 4.111 26 C -0.044 4.044 27 Cl -0.004 7.004 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.276 0.724 39 H 0.184 0.816 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.122 -13.339 -14.121 20.367 hybrid contribution 0.493 -1.328 0.871 1.662 sum 6.615 -14.666 -13.250 20.843 Atomic orbital electron populations 1.22077 0.98358 0.99095 1.01026 1.18764 0.91050 0.94077 0.79633 0.93107 1.21147 1.32611 1.13267 0.90317 0.92214 1.24880 0.94793 0.94938 0.99005 1.69892 1.35646 1.22352 1.24025 0.86516 0.79149 0.79540 0.81915 1.20187 1.21121 1.20202 1.46472 1.64892 1.13314 1.10345 1.17999 0.79740 0.87036 0.83080 1.90834 1.49915 1.14797 1.84452 1.19917 1.01513 0.93055 0.94618 1.20812 1.01878 0.93688 0.97623 1.17265 0.98654 0.80452 0.94850 1.44458 1.68190 1.07946 1.08898 1.22701 1.04483 0.89073 0.88093 1.22429 1.02984 0.96898 0.80918 1.45077 1.74235 1.10669 1.09866 1.15802 0.78058 0.81773 0.84132 1.90860 1.59415 1.74486 1.19838 1.21681 1.01039 0.93635 0.98486 1.20937 0.98804 0.93915 0.97488 1.21018 1.01713 0.87660 0.93987 1.98406 1.91496 1.12208 1.98285 0.89120 0.95542 0.96486 0.92476 0.78230 0.84415 0.88448 0.88499 0.89196 0.89264 0.72447 0.81619 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.27 6.63 2.56 -69.09 -0.18 6.45 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -13.70 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.42 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.97 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 12 N -0.70 -14.32 5.02 -55.90 -0.28 -14.60 16 13 C 0.54 10.95 7.73 -12.36 -0.10 10.86 16 14 O -0.52 -12.39 13.62 5.31 0.07 -12.32 16 15 C -0.09 -1.42 5.87 -104.96 -0.62 -2.04 16 16 C -0.12 -1.56 8.98 -38.98 -0.35 -1.91 16 17 C 0.18 2.30 6.61 -83.72 -0.55 1.74 16 18 N -0.57 -5.92 3.16 -118.27 -0.37 -6.29 16 19 C 0.08 0.49 6.48 -3.16 -0.02 0.47 16 20 C 0.09 0.37 8.06 -3.16 -0.03 0.34 16 21 N -0.74 -4.95 6.37 -64.70 -0.41 -5.36 16 22 C 0.70 7.79 8.52 -88.39 -0.75 7.03 16 23 O -0.57 -8.23 14.74 5.29 0.08 -8.15 16 24 C -0.13 -1.68 9.28 -39.32 -0.37 -2.04 16 25 C -0.09 -1.21 9.81 -39.63 -0.39 -1.60 16 26 C -0.01 -0.23 6.35 -39.06 -0.25 -0.48 16 27 Cl -0.03 -0.57 26.01 -51.86 -1.35 -1.91 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.38 6.60 6.57 -40.82 -0.27 6.33 16 33 H 0.14 1.54 5.63 -52.49 -0.30 1.24 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.20 8.14 -51.92 -0.42 -0.23 16 38 H 0.43 2.05 8.96 -40.82 -0.37 1.69 16 39 H 0.17 2.26 5.26 -52.49 -0.28 1.98 16 40 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -33.67 347.65 -9.48 -43.15 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.41 Total: 5.84 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.64 Total: 3.22 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.44 Total: -50.04 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.15 Total: -20.46 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.35 Total: -1.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.67 -9.48 -43.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266095272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.321 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds