Wall clock time and date at job start Tue Mar 31 2020 20:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47080 * 2 1 4 4 C 1.50699 * 109.46745 * 119.99559 * 2 1 3 5 5 H 1.07997 * 120.00297 * 120.00347 * 4 2 1 6 6 C 1.37882 * 120.00276 * 299.99674 * 4 2 1 7 7 N 1.31518 * 119.99746 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00436 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46711 * 60.00051 * 8 6 4 10 10 H 1.48496 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46981 * 300.00412 * 8 6 4 12 12 N 1.46495 * 109.47339 * 239.98935 * 2 1 3 13 13 C 1.34780 * 119.99432 * 85.00458 * 12 2 1 14 14 O 1.21558 * 120.00283 * 359.97438 * 13 12 2 15 15 C 1.47785 * 119.99772 * 180.02562 * 13 12 2 16 16 C 1.39551 * 120.12478 * 359.72129 * 15 13 12 17 17 C 1.38530 * 119.79183 * 179.74661 * 16 15 13 18 18 N 1.40029 * 119.98027 * 180.25214 * 17 16 15 19 19 C 1.47049 * 125.40974 * 354.20069 * 18 17 16 20 20 C 1.54108 * 103.86269 * 179.86622 * 19 18 17 21 21 N 1.47052 * 103.86072 * 0.37860 * 20 19 18 22 22 C 1.33949 * 125.40972 * 174.50415 * 18 17 16 23 23 O 1.21585 * 123.04280 * 359.97438 * 22 18 17 24 24 C 1.39017 * 120.04102 * 0.50897 * 17 16 15 25 25 C 1.38158 * 120.24531 * 359.76850 * 24 17 16 26 26 C 1.38180 * 120.20976 * 359.97438 * 25 24 17 27 27 Cl 1.73602 * 120.02110 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47631 * 300.00284 * 1 2 3 29 29 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47096 * 60.00750 * 1 2 3 31 31 H 0.96999 * 120.00015 * 179.97438 * 7 6 4 32 32 H 0.96993 * 120.01152 * 265.00458 * 12 2 1 33 33 H 1.07995 * 120.09878 * 0.02562 * 16 15 13 34 34 H 1.08997 * 110.54941 * 298.59490 * 19 18 17 35 35 H 1.09005 * 110.54544 * 61.40242 * 19 18 17 36 36 H 1.08993 * 110.75737 * 241.67630 * 20 19 18 37 37 H 1.09007 * 110.33529 * 118.86854 * 20 19 18 38 38 H 0.97002 * 125.41130 * 179.75129 * 21 20 19 39 39 H 1.07996 * 119.87514 * 179.74086 * 24 17 16 40 40 H 1.08004 * 119.89971 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3223 -1.1192 4.0082 9 1 3.8072 -1.1187 4.0079 10 1 1.8267 -0.4194 5.2205 11 1 1.8278 -2.5194 4.0085 12 7 2.0183 -0.6908 -1.1960 13 6 2.1471 -0.0185 -2.3570 14 8 1.8576 1.1608 -2.4119 15 6 2.6392 -0.7155 -3.5637 16 6 2.9768 -2.0681 -3.5025 17 6 3.4325 -2.7159 -4.6392 18 7 3.7673 -4.0744 -4.5835 19 6 3.7967 -4.8955 -3.3639 20 6 4.2184 -6.2896 -3.8674 21 7 4.3909 -6.1037 -5.3159 22 6 4.1173 -4.8311 -5.6319 23 8 4.1803 -4.4018 -6.7677 24 6 3.5625 -2.0168 -5.8337 25 6 3.2342 -0.6762 -5.8947 26 6 2.7737 -0.0212 -4.7685 27 17 2.3633 1.6637 -4.8505 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 0.7080 1.1612 3.4843 32 1 2.2490 -1.6319 -1.1525 33 1 2.8789 -2.6093 -2.5731 34 1 4.5283 -4.5043 -2.6569 35 1 2.8076 -4.9386 -2.9079 36 1 3.4396 -7.0249 -3.6660 37 1 5.1588 -6.5906 -3.4056 38 1 4.6601 -6.7931 -5.9429 39 1 3.9219 -2.5234 -6.7171 40 1 3.3378 -0.1383 -6.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266095272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:31 Heat of formation + Delta-G solvation = -36.466880 kcal Electronic energy + Delta-G solvation = -26477.403613 eV Core-core repulsion = 22511.100053 eV Total energy + Delta-G solvation = -3966.303560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.58963 -41.04261 -39.37629 -37.72625 -37.39323 -36.64706 -35.19543 -34.39006 -32.68436 -30.82215 -30.45779 -29.65441 -27.30144 -25.63381 -24.72328 -23.61282 -22.94464 -21.69181 -21.02924 -19.58473 -18.75974 -17.99880 -17.88288 -17.73361 -17.20929 -16.77374 -16.49263 -15.98339 -15.76530 -15.50833 -15.32723 -15.09012 -14.87631 -14.65756 -14.49443 -14.27762 -13.75802 -13.59683 -13.52520 -13.14635 -12.97814 -12.81850 -12.80177 -12.69887 -12.52601 -12.24774 -12.17585 -11.96272 -11.26145 -11.11510 -11.06942 -10.57952 -10.39781 -10.27701 -10.18110 -9.70722 -8.93527 -8.12829 -6.30559 -0.34489 0.00673 1.16275 1.33523 1.49152 1.51484 1.59099 1.71131 2.09217 2.33931 2.56178 2.72383 2.82965 3.18142 3.44164 3.47488 3.63268 3.94865 4.06852 4.13087 4.20684 4.37505 4.57598 4.67023 4.71923 4.78464 4.81912 4.90981 4.96792 5.08402 5.13787 5.19320 5.25164 5.47347 5.62895 5.71387 5.78113 5.94125 6.08285 6.12959 6.28757 6.75951 6.94246 7.33712 7.35176 7.53186 8.93409 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003797 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.989985 B = 7373.186729 C = 9888.355650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.291 1.291 11 H -0.260 1.260 12 N -0.695 5.695 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.104 4.104 16 C -0.105 4.105 17 C 0.190 3.810 18 N -0.572 5.572 19 C 0.065 3.935 20 C 0.096 3.904 21 N -0.723 5.723 22 C 0.690 3.310 23 O -0.611 6.611 24 C -0.127 4.127 25 C -0.081 4.081 26 C -0.030 4.030 27 Cl -0.054 7.054 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.161 0.839 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.442 0.558 39 H 0.166 0.834 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -18.558 -13.320 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.184 1.184 12 N -0.345 5.345 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.108 4.108 16 C -0.127 4.127 17 C 0.094 3.906 18 N -0.298 5.298 19 C -0.056 4.056 20 C -0.028 4.028 21 N -0.384 5.384 22 C 0.391 3.609 23 O -0.491 6.491 24 C -0.147 4.147 25 C -0.100 4.100 26 C -0.059 4.059 27 Cl -0.024 7.024 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.178 0.822 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.287 0.713 39 H 0.183 0.817 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.364 -17.241 -13.712 23.227 hybrid contribution 0.156 -0.241 0.669 0.728 sum 7.520 -17.482 -13.043 23.072 Atomic orbital electron populations 1.21901 0.98333 0.99520 0.99495 1.18359 0.91029 0.92028 0.81543 0.98227 1.21502 1.32604 1.13675 0.90477 0.90339 1.25813 0.94857 0.95545 1.02375 1.70061 1.37029 1.24043 1.24607 0.85386 0.78622 0.78830 0.77428 1.19539 1.21698 1.18438 1.46148 1.64965 1.14052 1.09293 1.18537 0.78720 0.86692 0.83887 1.90810 1.51564 1.16766 1.85209 1.19597 1.03850 0.94357 0.93013 1.20846 1.00842 0.92261 0.98762 1.17273 0.97373 0.81740 0.94199 1.44556 1.67519 1.07203 1.10471 1.23140 1.05925 0.89593 0.86904 1.22717 1.05199 0.96061 0.78804 1.45089 1.72601 1.09172 1.11550 1.16112 0.78170 0.83012 0.83640 1.90825 1.61210 1.75557 1.21536 1.21795 1.00572 0.93526 0.98852 1.21097 0.97530 0.93967 0.97449 1.21162 1.03152 0.86889 0.94738 1.98395 1.91801 1.13908 1.98329 0.91491 0.93923 0.97129 0.92658 0.76085 0.82158 0.87189 0.87137 0.86681 0.86730 0.71335 0.81721 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.87 2.56 44.24 0.11 13.98 16 3 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 4 C -0.54 -27.55 8.73 25.60 0.22 -27.32 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -51.89 11.32 21.45 0.24 -51.65 16 8 Si 0.97 40.18 29.54 68.60 2.03 42.21 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 12 N -0.69 -28.18 5.02 -449.06 -2.25 -30.43 16 13 C 0.54 22.12 7.73 86.77 0.67 22.79 16 14 O -0.56 -27.83 13.62 -3.90 -0.05 -27.89 16 15 C -0.10 -3.37 5.87 -20.08 -0.12 -3.48 16 16 C -0.11 -2.58 8.98 22.66 0.20 -2.38 16 17 C 0.19 4.41 6.61 38.09 0.25 4.66 16 18 N -0.57 -10.33 3.16 -646.83 -2.04 -12.37 16 19 C 0.07 0.55 6.48 86.65 0.56 1.11 16 20 C 0.10 0.32 8.06 86.65 0.70 1.02 16 21 N -0.72 -7.38 6.37 -477.33 -3.04 -10.42 16 22 C 0.69 13.76 8.52 179.57 1.53 15.29 16 23 O -0.61 -16.98 14.74 -3.98 -0.06 -17.04 16 24 C -0.13 -3.16 9.28 22.44 0.21 -2.95 16 25 C -0.08 -2.06 9.81 22.24 0.22 -1.84 16 26 C -0.03 -0.96 6.35 22.61 0.14 -0.81 16 27 Cl -0.05 -1.87 26.01 -2.72 -0.07 -1.94 16 28 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.40 13.09 6.57 -92.71 -0.61 12.48 16 33 H 0.16 3.07 5.63 -2.91 -0.02 3.05 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.66 8.11 -2.38 -0.02 0.64 16 36 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 38 H 0.44 2.89 8.96 -92.71 -0.83 2.06 16 39 H 0.17 4.31 5.26 -2.91 -0.02 4.30 16 40 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -76.18 347.65 0.25 -75.92 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.32 Total: 18.38 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 5.82 Total: 15.23 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -7.10 Total: -104.88 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.11 Total: -44.92 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -76.18 0.25 -75.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266095272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.458 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds