Wall clock time and date at job start Tue Mar 31 2020 19:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38643 * 120.80665 * 2 1 4 4 C 1.38160 * 119.25103 * 180.27627 * 3 2 1 5 5 N 1.31911 * 120.89877 * 359.72243 * 4 3 2 6 6 C 1.31881 * 121.76446 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.67635 * 179.97438 * 6 5 4 8 8 C 1.38912 * 120.65400 * 0.02562 * 6 5 4 9 9 O 1.35933 * 120.47940 * 179.97438 * 8 6 5 10 10 C 1.42898 * 117.00226 * 89.99609 * 9 8 6 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47398 * 89.99557 * 14 13 11 16 16 H 1.08003 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00048 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00473 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47398 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47236 * 120.00416 * 19 17 15 22 22 H 1.48507 * 109.47103 * 240.00011 * 19 17 15 23 23 C 1.46505 * 119.99832 * 359.97438 * 13 11 10 24 24 C 1.52994 * 109.47022 * 90.00138 * 23 13 11 25 25 C 1.47206 * 109.47290 * 179.97438 * 24 23 13 26 26 N 7.18114 * 75.78492 * 113.22278 * 2 1 3 27 27 H 1.09000 * 109.47220 * 270.24711 * 1 2 3 28 28 H 1.09000 * 109.47028 * 30.24290 * 1 2 3 29 29 H 1.08995 * 109.47092 * 150.24443 * 1 2 3 30 30 H 1.08007 * 120.37546 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.54873 * 179.70274 * 4 3 2 32 32 H 1.09002 * 109.47259 * 300.00270 * 10 9 8 33 33 H 1.09001 * 109.47074 * 60.00292 * 10 9 8 34 34 H 1.09000 * 109.47082 * 209.99555 * 14 13 11 35 35 H 1.09004 * 109.46754 * 329.99821 * 14 13 11 36 36 H 0.96999 * 120.00725 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47024 * 210.00620 * 23 13 11 38 38 H 1.09000 * 109.46875 * 330.00379 * 23 13 11 39 39 H 1.09005 * 109.47443 * 299.99879 * 24 23 13 40 40 H 1.09000 * 109.47099 * 60.00377 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1908 0.0000 4 6 3.5981 1.1533 -0.0058 5 7 4.2445 0.0034 -0.0058 6 6 3.6073 -1.1512 -0.0009 7 17 4.5126 -2.6325 -0.0019 8 6 2.2189 -1.1939 0.0041 9 8 1.5657 -2.3861 0.0086 10 6 1.2586 -2.9526 1.2840 11 6 0.5406 -4.2636 1.0916 12 8 0.3138 -4.6722 -0.0276 13 7 0.1495 -4.9814 2.1631 14 6 -0.5480 -6.2561 1.9761 15 6 0.4594 -7.3750 1.9099 16 1 1.5137 -7.1584 1.9988 17 6 0.0350 -8.6752 1.7360 18 7 -1.2488 -8.9390 1.6272 19 14 1.2837 -10.0622 1.6548 20 1 2.6524 -9.5053 1.8014 21 1 1.0218 -11.0288 2.7512 22 1 1.1694 -10.7551 0.3462 23 6 0.4229 -4.4876 3.5151 24 6 -0.7469 -3.6226 3.9883 25 6 -0.4725 -3.1269 5.3469 26 7 -0.2565 -2.7449 6.3973 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5100 30 1 1.6964 2.1371 -0.0004 31 1 4.1560 2.0780 -0.0107 32 1 2.1818 -3.1224 1.8381 33 1 0.6207 -2.2671 1.8420 34 1 -1.2252 -6.4259 2.8131 35 1 -1.1182 -6.2253 1.0476 36 1 -1.5473 -9.8537 1.5044 37 1 0.5474 -5.3325 4.1922 38 1 1.3354 -3.8914 3.5064 39 1 -0.8714 -2.7776 3.3111 40 1 -1.6594 -4.2188 3.9969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271604345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:05 Heat of formation + Delta-G solvation = -34.051104 kcal Electronic energy + Delta-G solvation = -26352.994343 eV Core-core repulsion = 22386.795539 eV Total energy + Delta-G solvation = -3966.198804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81880 -40.79131 -38.89690 -37.94314 -37.70660 -36.68668 -34.89262 -34.68191 -32.21931 -31.71106 -30.33127 -28.90620 -28.01926 -25.35688 -24.75610 -24.09539 -23.26980 -20.28756 -19.22929 -18.90719 -18.44731 -18.35676 -17.79807 -17.67355 -17.19091 -16.53540 -16.40242 -15.87680 -15.64955 -15.50452 -15.06580 -14.85179 -14.57623 -14.28797 -14.07554 -13.95015 -13.79322 -13.75549 -13.57685 -13.53126 -13.20278 -12.95939 -12.75692 -12.71997 -12.68921 -12.54300 -12.34180 -12.19751 -11.98180 -11.66421 -11.57785 -10.66345 -10.58906 -10.50905 -10.45034 -9.88826 -9.54408 -8.18758 -6.29977 -0.30742 -0.01737 0.77460 1.38182 1.41630 1.50908 1.60814 1.68954 1.82790 1.90607 2.39381 2.46623 2.73034 3.11873 3.15544 3.42778 3.64075 3.68536 3.78441 3.88787 3.98928 4.07703 4.10737 4.18246 4.26031 4.53623 4.62371 4.75639 4.78935 4.81910 5.02997 5.07885 5.16845 5.20811 5.33549 5.41228 5.58134 5.84224 6.12200 6.14127 6.59486 6.63156 6.66700 6.79667 7.30601 7.45013 8.88211 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003654 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.743143 B = 7661.822676 C = 9015.407445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 C -0.142 4.142 4 C 0.113 3.887 5 N -0.496 5.496 6 C 0.139 3.861 7 Cl -0.041 7.041 8 C 0.041 3.959 9 O -0.316 6.316 10 C 0.054 3.946 11 C 0.508 3.492 12 O -0.569 6.569 13 N -0.591 5.591 14 C 0.261 3.739 15 C -0.542 4.542 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.285 1.285 23 C 0.107 3.893 24 C -0.038 4.038 25 C 0.245 3.755 26 N -0.488 5.488 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.191 0.809 31 H 0.205 0.795 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.043 0.957 35 H 0.007 0.993 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 24.165 0.750 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.043 4.043 5 N -0.210 5.210 6 C -0.024 4.024 7 Cl -0.013 7.013 8 C -0.006 4.006 9 O -0.231 6.231 10 C -0.023 4.023 11 C 0.295 3.705 12 O -0.447 6.447 13 N -0.323 5.323 14 C 0.141 3.859 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.563 5.563 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.212 1.212 23 C -0.017 4.017 24 C -0.079 4.079 25 C -0.073 4.073 26 N -0.166 5.166 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.208 0.792 31 H 0.222 0.778 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.694 24.088 1.558 24.590 hybrid contribution -0.076 -1.811 -0.515 1.884 sum 4.618 22.277 1.043 22.775 Atomic orbital electron populations 1.20910 0.87229 1.04687 1.04702 1.21067 0.99140 0.90952 0.94238 1.22585 0.94794 0.99471 0.99238 1.23437 0.92870 0.95005 0.93018 1.67064 1.41886 0.97833 1.14192 1.22362 0.88556 0.89445 1.02080 1.98430 1.75976 1.30472 1.96400 1.19380 0.88788 0.87099 1.05353 1.86154 1.75524 1.33157 1.28286 1.22672 1.01138 0.93184 0.85266 1.20513 0.79468 0.85925 0.84572 1.90713 1.56378 1.71910 1.25741 1.47986 1.57401 1.21594 1.05340 1.18868 0.91561 0.78746 0.96741 1.21782 0.93812 0.92598 1.49846 0.93039 1.25646 0.96930 1.01081 0.94804 1.70006 1.14996 1.20805 1.50459 0.85580 0.79426 0.79373 0.77721 1.19556 1.19669 1.21150 1.21612 0.97507 0.99347 0.83275 1.19852 1.01683 1.01997 0.84382 1.29223 0.91812 0.91765 0.94474 1.81366 1.10211 1.11515 1.13511 0.88122 0.87781 0.91918 0.79189 0.77846 0.89000 0.85823 0.93895 0.97443 0.92530 0.89162 0.88123 0.84299 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.86 71.23 0.70 -0.66 16 2 C -0.05 -0.72 5.93 -19.58 -0.12 -0.84 16 3 C -0.14 -1.41 9.81 22.35 0.22 -1.19 16 4 C 0.11 1.47 11.17 84.66 0.95 2.42 16 5 N -0.50 -11.09 10.34 -186.33 -1.93 -13.01 16 6 C 0.14 3.61 7.29 84.85 0.62 4.23 16 7 Cl -0.04 -1.21 28.66 -2.72 -0.08 -1.29 16 8 C 0.04 0.99 5.72 22.62 0.13 1.12 16 9 O -0.32 -9.35 8.24 -73.76 -0.61 -9.96 16 10 C 0.05 1.38 5.09 71.24 0.36 1.75 16 11 C 0.51 18.59 7.75 87.66 0.68 19.27 16 12 O -0.57 -27.87 16.08 16.01 0.26 -27.62 16 13 N -0.59 -20.64 2.46 -826.17 -2.03 -22.66 16 14 C 0.26 12.31 5.16 85.63 0.44 12.75 16 15 C -0.54 -29.11 9.39 25.60 0.24 -28.87 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 17 C 0.01 0.82 5.46 84.65 0.46 1.28 16 18 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 19 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.11 2.47 5.17 86.38 0.45 2.91 16 24 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 25 C 0.24 4.83 15.44 89.42 1.38 6.21 16 26 N -0.49 -12.73 18.55 20.04 0.37 -12.36 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 29 H 0.06 1.08 7.62 -2.39 -0.02 1.06 16 30 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 31 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.09 2.15 7.40 -2.39 -0.02 2.13 16 33 H 0.12 1.94 7.18 -2.39 -0.02 1.92 16 34 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 35 H 0.01 0.41 7.42 -2.39 -0.02 0.39 16 36 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 38 H 0.10 1.81 6.44 -2.39 -0.02 1.79 16 39 H 0.14 1.33 7.22 -2.38 -0.02 1.31 16 40 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -81.24 373.79 6.07 -75.17 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.08 Total: -1.52 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.69 Total: 19.95 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -3.30 Total: -100.69 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.35 Total: -37.58 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -81.24 6.07 -75.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271604345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.123 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds