Wall clock time and date at job start Tue Mar 31 2020 19:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 H 1.08991 * 109.47300 * 304.84251 * 3 2 1 5 5 C 1.50697 * 109.47045 * 184.84037 * 3 2 1 6 6 H 1.08004 * 119.99848 * 240.00112 * 5 3 2 7 7 C 1.37872 * 120.00257 * 60.00072 * 5 3 2 8 8 N 1.31513 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00253 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47166 * 90.00555 * 9 7 5 11 11 H 1.48507 * 109.47154 * 210.00188 * 9 7 5 12 12 H 1.48500 * 109.46975 * 330.00238 * 9 7 5 13 13 N 1.46507 * 109.46674 * 64.84220 * 3 2 1 14 14 S 1.65600 * 119.99645 * 215.52180 * 13 3 2 15 15 O 1.42100 * 106.40103 * 178.76329 * 14 13 3 16 16 O 1.42103 * 106.40052 * 311.67955 * 14 13 3 17 17 C 1.76198 * 107.22052 * 65.22043 * 14 13 3 18 18 C 1.38299 * 119.96477 * 94.18381 * 17 14 13 19 19 C 1.38261 * 120.12670 * 179.97438 * 18 17 14 20 20 C 1.38136 * 120.06467 * 0.03197 * 19 18 17 21 21 C 1.38805 * 119.93999 * 359.97438 * 20 19 18 22 22 N 1.40257 * 120.06687 * 180.02562 * 21 20 19 23 23 C 1.35062 * 127.39380 * 5.00320 * 22 21 20 24 24 N 1.30730 * 107.27758 * 179.97438 * 23 22 21 25 25 N 1.28420 * 110.64862 * 0.02562 * 24 23 22 26 26 N 1.28949 * 110.20233 * 359.74185 * 25 24 23 27 27 C 1.38100 * 119.96710 * 273.91264 * 17 14 13 28 28 H 1.08996 * 109.46942 * 304.75313 * 1 2 3 29 29 H 1.08999 * 109.46866 * 64.75117 * 1 2 3 30 30 H 1.09002 * 109.47303 * 184.75371 * 1 2 3 31 31 H 1.09003 * 109.46971 * 240.00123 * 2 1 3 32 32 H 1.08999 * 109.47185 * 120.00368 * 2 1 3 33 33 H 0.96997 * 120.00472 * 179.97438 * 8 7 5 34 34 H 0.96995 * 119.99940 * 35.51935 * 13 3 2 35 35 H 1.07998 * 119.93688 * 359.97438 * 18 17 14 36 36 H 1.07998 * 119.96234 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.03423 * 180.02562 * 20 19 18 38 38 H 1.08008 * 126.35634 * 359.94079 * 23 22 21 39 39 H 1.08001 * 120.03348 * 0.02580 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6077 1.9808 -0.8433 5 6 3.5423 1.4441 -0.1199 6 1 4.1455 1.8894 0.6575 7 6 4.1465 0.8772 -1.2219 8 7 3.4119 0.3355 -2.1687 9 14 6.0085 0.8798 -1.3708 10 1 6.5568 -0.3511 -0.7467 11 1 6.3903 0.9197 -2.8054 12 1 6.5588 2.0730 -0.6788 13 7 1.6492 2.0986 1.2503 14 16 1.2400 3.7032 1.2505 15 8 0.8874 4.0272 2.5884 16 8 2.2629 4.3782 0.5312 17 6 -0.2311 3.8666 0.2946 18 6 -1.4655 3.8489 0.9181 19 6 -2.6220 3.9774 0.1713 20 6 -2.5475 4.1230 -1.2003 21 6 -1.3100 4.1409 -1.8289 22 7 -1.2313 4.2892 -3.2213 23 6 -2.2478 4.5184 -4.0806 24 7 -1.7336 4.5890 -5.2804 25 7 -0.4613 4.4197 -5.2385 26 7 -0.0763 4.2363 -4.0216 27 6 -0.1502 4.0176 -1.0757 28 1 -0.3633 0.5858 0.8443 29 1 -0.3633 0.4384 -0.9295 30 1 -0.3634 -1.0241 0.0852 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8370 -0.0631 -2.9441 34 1 1.6301 1.5931 2.0779 35 1 -1.5261 3.7347 1.9903 36 1 -3.5845 3.9637 0.6610 37 1 -3.4512 4.2237 -1.7831 38 1 -3.2917 4.6232 -3.8241 39 1 0.8142 4.0353 -1.5616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273935330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:19 Heat of formation + Delta-G solvation = 78.642116 kcal Electronic energy + Delta-G solvation = -27508.528210 eV Core-core repulsion = 23581.552608 eV Total energy + Delta-G solvation = -3926.975601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.30316 -39.73382 -36.83506 -36.04790 -35.39267 -35.28679 -32.51613 -32.22083 -31.55572 -30.73755 -30.39990 -26.69021 -25.33111 -24.39398 -23.11860 -22.53345 -22.06726 -20.30368 -19.74217 -18.47287 -17.13116 -16.80272 -16.77744 -16.70502 -16.31357 -15.92789 -15.62306 -15.21140 -14.52747 -14.26108 -13.79435 -13.74455 -13.39078 -13.20025 -13.05106 -12.74124 -12.47996 -12.05501 -11.96108 -11.85229 -11.75146 -11.61138 -11.46540 -11.26607 -11.13970 -10.99393 -10.82282 -10.75054 -10.61646 -10.23194 -9.93617 -9.88513 -9.86433 -9.64637 -8.99383 -8.44970 -8.34309 -6.08704 -4.15788 0.06314 0.55565 0.88271 1.37498 1.59039 2.14905 3.06323 3.31106 3.39121 3.44440 3.63224 3.81320 3.96814 4.13478 4.38011 4.42270 4.49137 4.57211 4.76711 4.86130 5.11567 5.18930 5.23776 5.24054 5.51002 5.71011 5.77470 5.86131 5.97917 5.98885 6.04228 6.18680 6.36680 6.47043 6.67250 6.82433 6.99696 7.47729 7.57311 7.82200 8.01418 8.18924 8.28382 8.87115 9.51126 10.95740 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.005382 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.145455 B = 5201.408356 C = 6782.004675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.041 0.959 5 C -0.523 4.523 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 N -1.096 6.096 14 S 2.686 3.314 15 O -0.978 6.978 16 O -0.937 6.937 17 C -0.650 4.650 18 C -0.012 4.012 19 C -0.119 4.119 20 C -0.074 4.074 21 C 0.106 3.894 22 N -0.326 5.326 23 C 0.218 3.782 24 N -0.332 5.332 25 N -0.036 5.036 26 N -0.054 5.054 27 C 0.008 3.992 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.238 0.762 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.494 4.889 4.215 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.058 0.942 5 C -0.563 4.563 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.858 5.858 14 S 2.771 3.229 15 O -0.968 6.968 16 O -0.927 6.927 17 C -0.733 4.733 18 C -0.032 4.032 19 C -0.139 4.139 20 C -0.095 4.095 21 C 0.013 3.987 22 N -0.116 5.116 23 C -0.079 4.079 24 N -0.180 5.180 25 N -0.031 5.031 26 N -0.039 5.039 27 C -0.013 4.013 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.254 0.746 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.988 5.575 3.190 16.306 hybrid contribution -0.399 -0.609 0.407 0.834 sum -15.386 4.965 3.597 16.563 Atomic orbital electron populations 1.21840 0.99197 0.99552 0.99963 1.21898 0.91777 0.99459 1.03569 1.18603 0.95088 0.90133 0.78550 0.94182 1.21466 0.90967 1.37734 1.06102 0.91660 1.24885 0.98596 0.94866 0.95353 1.69815 1.35196 1.38318 1.09519 0.86510 0.85215 0.78473 0.77399 1.20705 1.21084 1.19595 1.55536 1.82261 1.29474 1.18485 1.02250 0.73653 0.73933 0.73027 1.93530 1.84841 1.83685 1.34789 1.93645 1.52535 1.72607 1.73880 1.31568 1.20884 1.14108 1.06780 1.21161 0.90601 0.90413 1.01044 1.21117 0.99403 1.00882 0.92474 1.21083 0.94943 0.97686 0.95838 1.17581 0.95876 1.07589 0.77637 1.49106 1.06931 1.48080 1.07490 1.27362 0.97832 0.97153 0.85541 1.74458 1.02247 1.21486 1.19845 1.78134 1.04329 1.09385 1.11234 1.82950 1.04903 1.19611 0.96419 1.20874 0.98867 0.89644 0.91912 0.94295 0.94090 0.94406 0.87486 0.93817 0.92595 0.75811 0.83163 0.83610 0.84251 0.74647 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.85 37.16 0.37 -2.15 16 2 C -0.13 -2.64 5.37 -26.73 -0.14 -2.78 16 3 C 0.28 6.22 2.15 -69.08 -0.15 6.08 16 4 H 0.04 0.95 6.87 -51.93 -0.36 0.60 16 5 C -0.52 -13.59 8.84 -34.44 -0.30 -13.90 16 6 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.10 11.29 55.43 0.63 -23.47 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -1.10 -20.05 4.82 -5.88 -0.03 -20.07 16 14 S 2.69 47.53 5.64 -107.50 -0.61 46.93 16 15 O -0.98 -17.38 17.18 -57.17 -0.98 -18.36 16 16 O -0.94 -20.46 17.14 -57.17 -0.98 -21.44 16 17 C -0.65 -9.53 5.85 -39.61 -0.23 -9.76 16 18 C -0.01 -0.14 9.52 -39.55 -0.38 -0.51 16 19 C -0.12 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.07 -0.63 9.49 -39.41 -0.37 -1.01 16 21 C 0.11 1.36 6.70 -83.57 -0.56 0.80 16 22 N -0.33 -4.46 3.85 -11.74 -0.05 -4.51 16 23 C 0.22 2.29 12.15 -90.17 -1.10 1.19 16 24 N -0.33 -4.72 12.15 29.64 0.36 -4.36 16 25 N -0.04 -0.62 13.39 60.35 0.81 0.19 16 26 N -0.05 -0.95 13.35 60.35 0.81 -0.15 16 27 C 0.01 0.13 8.37 -39.41 -0.33 -0.20 16 28 H 0.04 0.57 7.62 -51.93 -0.40 0.18 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 2.56 5.96 -51.93 -0.31 2.25 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.41 6.43 8.84 -34.47 -0.30 6.13 16 35 H 0.15 1.40 7.52 -52.49 -0.39 1.00 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.58 6.91 -52.49 -0.36 0.22 16 38 H 0.24 0.93 7.22 -52.48 -0.38 0.55 16 39 H 0.16 2.98 7.24 -52.49 -0.38 2.60 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -34.17 350.09 -7.60 -41.77 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.12 Total: 4.02 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.69 Total: -21.98 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 2.53 Total: -52.37 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.96 Total: -39.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 47.53 SS G_CDS: -0.61 Total: 46.93 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.17 -7.60 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273935330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.408 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds