Wall clock time and date at job start Tue Mar 31 2020 19:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 H 1.08991 * 109.47300 * 304.84251 * 3 2 1 5 5 C 1.50697 * 109.47045 * 184.84037 * 3 2 1 6 6 H 1.08004 * 119.99848 * 240.00112 * 5 3 2 7 7 C 1.37872 * 120.00257 * 60.00072 * 5 3 2 8 8 N 1.31513 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00253 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47166 * 90.00555 * 9 7 5 11 11 H 1.48507 * 109.47154 * 210.00188 * 9 7 5 12 12 H 1.48500 * 109.46975 * 330.00238 * 9 7 5 13 13 N 1.46507 * 109.46674 * 64.84220 * 3 2 1 14 14 S 1.65600 * 119.99645 * 215.52180 * 13 3 2 15 15 O 1.42100 * 106.40103 * 178.76329 * 14 13 3 16 16 O 1.42103 * 106.40052 * 311.67955 * 14 13 3 17 17 C 1.76198 * 107.22052 * 65.22043 * 14 13 3 18 18 C 1.38299 * 119.96477 * 94.18381 * 17 14 13 19 19 C 1.38261 * 120.12670 * 179.97438 * 18 17 14 20 20 C 1.38136 * 120.06467 * 0.03197 * 19 18 17 21 21 C 1.38805 * 119.93999 * 359.97438 * 20 19 18 22 22 N 1.40257 * 120.06687 * 180.02562 * 21 20 19 23 23 C 1.35062 * 127.39380 * 5.00320 * 22 21 20 24 24 N 1.30730 * 107.27758 * 179.97438 * 23 22 21 25 25 N 1.28420 * 110.64862 * 0.02562 * 24 23 22 26 26 N 1.28949 * 110.20233 * 359.74185 * 25 24 23 27 27 C 1.38100 * 119.96710 * 273.91264 * 17 14 13 28 28 H 1.08996 * 109.46942 * 304.75313 * 1 2 3 29 29 H 1.08999 * 109.46866 * 64.75117 * 1 2 3 30 30 H 1.09002 * 109.47303 * 184.75371 * 1 2 3 31 31 H 1.09003 * 109.46971 * 240.00123 * 2 1 3 32 32 H 1.08999 * 109.47185 * 120.00368 * 2 1 3 33 33 H 0.96997 * 120.00472 * 179.97438 * 8 7 5 34 34 H 0.96995 * 119.99940 * 35.51935 * 13 3 2 35 35 H 1.07998 * 119.93688 * 359.97438 * 18 17 14 36 36 H 1.07998 * 119.96234 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.03423 * 180.02562 * 20 19 18 38 38 H 1.08008 * 126.35634 * 359.94079 * 23 22 21 39 39 H 1.08001 * 120.03348 * 0.02580 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6077 1.9808 -0.8433 5 6 3.5423 1.4441 -0.1199 6 1 4.1455 1.8894 0.6575 7 6 4.1465 0.8772 -1.2219 8 7 3.4119 0.3355 -2.1687 9 14 6.0085 0.8798 -1.3708 10 1 6.5568 -0.3511 -0.7467 11 1 6.3903 0.9197 -2.8054 12 1 6.5588 2.0730 -0.6788 13 7 1.6492 2.0986 1.2503 14 16 1.2400 3.7032 1.2505 15 8 0.8874 4.0272 2.5884 16 8 2.2629 4.3782 0.5312 17 6 -0.2311 3.8666 0.2946 18 6 -1.4655 3.8489 0.9181 19 6 -2.6220 3.9774 0.1713 20 6 -2.5475 4.1230 -1.2003 21 6 -1.3100 4.1409 -1.8289 22 7 -1.2313 4.2892 -3.2213 23 6 -2.2478 4.5184 -4.0806 24 7 -1.7336 4.5890 -5.2804 25 7 -0.4613 4.4197 -5.2385 26 7 -0.0763 4.2363 -4.0216 27 6 -0.1502 4.0176 -1.0757 28 1 -0.3633 0.5858 0.8443 29 1 -0.3633 0.4384 -0.9295 30 1 -0.3634 -1.0241 0.0852 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8370 -0.0631 -2.9441 34 1 1.6301 1.5931 2.0779 35 1 -1.5261 3.7347 1.9903 36 1 -3.5845 3.9637 0.6610 37 1 -3.4512 4.2237 -1.7831 38 1 -3.2917 4.6232 -3.8241 39 1 0.8142 4.0353 -1.5616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273935330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:18 Heat of formation + Delta-G solvation = 52.361287 kcal Electronic energy + Delta-G solvation = -27509.667832 eV Core-core repulsion = 23581.552608 eV Total energy + Delta-G solvation = -3928.115224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.34549 -40.63515 -38.34567 -37.72049 -36.90428 -36.30837 -34.17651 -33.55175 -32.46779 -32.26729 -31.34201 -28.55631 -26.31431 -25.37294 -24.89907 -23.49187 -23.07697 -21.96243 -20.88419 -19.77271 -18.77329 -18.31875 -17.76978 -17.70170 -17.54038 -17.21474 -16.85969 -16.56073 -16.11522 -15.40443 -15.05463 -14.92033 -14.78109 -14.58776 -14.37027 -13.79534 -13.62172 -13.47752 -13.34729 -13.21260 -13.10656 -13.05870 -12.86694 -12.83280 -12.75260 -12.61514 -12.18657 -12.13930 -11.99053 -11.70175 -11.64691 -11.58705 -11.44214 -10.58987 -10.46425 -10.06993 -9.91276 -8.12734 -6.24963 -0.83063 -0.59807 -0.31512 0.43123 0.67519 1.14627 1.37490 1.41561 1.50495 2.05615 2.36002 2.43444 2.78155 2.92630 3.14751 3.26264 3.41132 3.58293 3.78881 3.85696 3.92145 4.14120 4.27177 4.31869 4.43828 4.57216 4.58868 4.66603 4.82245 4.83947 4.98142 5.01017 5.10269 5.20898 5.33013 5.36818 5.64720 5.65445 5.78122 5.99902 6.26009 6.44388 6.81578 7.21690 7.43730 8.88924 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.005382 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.145455 B = 5201.408356 C = 6782.004675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.288 3.712 4 H 0.019 0.981 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.278 1.278 13 N -1.095 6.095 14 S 2.695 3.305 15 O -0.981 6.981 16 O -0.995 6.995 17 C -0.659 4.659 18 C -0.013 4.013 19 C -0.096 4.096 20 C -0.045 4.045 21 C 0.090 3.910 22 N -0.328 5.328 23 C 0.247 3.753 24 N -0.356 5.356 25 N -0.062 5.062 26 N -0.114 5.114 27 C -0.026 4.026 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.419 0.581 35 H 0.171 0.829 36 H 0.204 0.796 37 H 0.202 0.798 38 H 0.309 0.691 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 4.883 5.706 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.183 3.817 4 H 0.037 0.963 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.857 5.857 14 S 2.787 3.213 15 O -0.971 6.971 16 O -0.985 6.985 17 C -0.748 4.748 18 C -0.033 4.033 19 C -0.115 4.115 20 C -0.066 4.066 21 C -0.003 4.003 22 N -0.118 5.118 23 C -0.048 4.048 24 N -0.206 5.206 25 N -0.057 5.057 26 N -0.099 5.099 27 C -0.048 4.048 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.189 0.811 36 H 0.221 0.779 37 H 0.219 0.781 38 H 0.324 0.676 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.042 5.548 4.746 21.330 hybrid contribution 0.987 -0.517 -0.001 1.114 sum -19.055 5.031 4.745 20.271 Atomic orbital electron populations 1.21716 0.95866 1.01279 1.00585 1.21713 0.94802 0.97627 1.02138 1.18245 0.92836 0.91184 0.79425 0.96283 1.21840 0.93393 1.37101 1.05708 0.93070 1.25511 1.01862 0.95053 0.95417 1.69932 1.36137 1.39021 1.09715 0.85791 0.81614 0.78549 0.77173 1.19178 1.21076 1.20344 1.55251 1.83126 1.29510 1.17776 1.01436 0.74058 0.73019 0.72808 1.93512 1.85077 1.83459 1.35035 1.93575 1.56273 1.73712 1.74924 1.30734 1.20428 1.17820 1.05841 1.21602 0.89988 0.89296 1.02409 1.21789 1.00319 0.97307 0.92051 1.21833 0.94707 0.93570 0.96473 1.17888 0.96674 1.08685 0.77022 1.49154 1.06646 1.48026 1.08009 1.28669 0.99370 0.93232 0.83552 1.74355 1.01360 1.22644 1.22212 1.78112 1.06007 1.10085 1.11531 1.82927 1.07755 1.22087 0.97150 1.20548 0.98513 0.92923 0.92766 0.91729 0.95027 0.92356 0.90876 0.93239 0.92843 0.74532 0.81144 0.77883 0.78141 0.67627 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.85 71.98 0.71 -3.76 16 2 C -0.12 -5.20 5.37 30.59 0.16 -5.04 16 3 C 0.29 13.44 2.15 44.24 0.10 13.53 16 4 H 0.02 0.99 6.87 -2.39 -0.02 0.97 16 5 C -0.54 -29.67 8.84 25.60 0.23 -29.44 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.47 16 9 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 N -1.10 -41.31 4.82 -172.52 -0.83 -42.14 16 14 S 2.70 98.99 5.64 -56.49 -0.32 98.67 16 15 O -0.98 -34.62 17.18 -128.00 -2.20 -36.82 16 16 O -0.99 -47.19 17.14 -128.00 -2.19 -49.38 16 17 C -0.66 -19.01 5.85 22.25 0.13 -18.88 16 18 C -0.01 -0.24 9.52 22.29 0.21 -0.02 16 19 C -0.10 -0.88 10.04 22.25 0.22 -0.65 16 20 C -0.05 -0.47 9.49 22.38 0.21 -0.26 16 21 C 0.09 2.10 6.70 38.07 0.26 2.36 16 22 N -0.33 -8.57 3.85 -191.06 -0.74 -9.31 16 23 C 0.25 4.28 12.15 180.19 2.19 6.47 16 24 N -0.36 -9.74 12.15 -60.13 -0.73 -10.47 16 25 N -0.06 -2.24 13.39 37.02 0.50 -1.74 16 26 N -0.11 -4.26 13.35 37.02 0.49 -3.77 16 27 C -0.03 -0.83 8.37 22.38 0.19 -0.65 16 28 H 0.06 1.75 7.62 -2.39 -0.02 1.73 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.07 3.63 5.96 -2.39 -0.01 3.62 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.42 13.32 8.84 -96.75 -0.86 12.46 16 35 H 0.17 2.36 7.52 -2.91 -0.02 2.34 16 36 H 0.20 -0.26 8.06 -2.91 -0.02 -0.28 16 37 H 0.20 -0.37 6.91 -2.91 -0.02 -0.39 16 38 H 0.31 0.02 7.22 -2.91 -0.02 0.00 16 39 H 0.11 4.75 7.24 -2.91 -0.02 4.73 16 Total: -1.00 -86.19 350.09 1.56 -84.63 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.26 Total: 9.27 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 5.05 Total: -34.68 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -1.07 Total: -118.90 kcal Atomic # 8 Polarization: -81.81 SS G_CDS: -4.39 Total: -86.20 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 98.99 SS G_CDS: -0.32 Total: 98.67 kcal Total: -86.19 1.56 -84.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273935330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.993 kcal (2) G-P(sol) polarization free energy of solvation -86.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds