Wall clock time and date at job start Tue Mar 31 2020 19:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47395 * 2 1 4 4 H 1.09002 * 109.47436 * 55.14584 * 3 2 1 5 5 C 1.50698 * 109.47478 * 175.15065 * 3 2 1 6 6 H 1.07995 * 119.99950 * 119.99633 * 5 3 2 7 7 C 1.37878 * 119.99864 * 299.99907 * 5 3 2 8 8 N 1.31515 * 119.99979 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47027 * 89.99672 * 9 7 5 11 11 H 1.48499 * 109.46962 * 209.99613 * 9 7 5 12 12 H 1.48494 * 109.47051 * 329.99897 * 9 7 5 13 13 N 1.46500 * 109.46674 * 295.14731 * 3 2 1 14 14 S 1.65612 * 119.99692 * 144.18830 * 13 3 2 15 15 O 1.42095 * 106.39988 * 310.45430 * 14 13 3 16 16 O 1.42105 * 106.39745 * 177.53650 * 14 13 3 17 17 C 1.76200 * 107.21544 * 63.99617 * 14 13 3 18 18 C 1.38276 * 119.93392 * 269.72280 * 17 14 13 19 19 C 1.38125 * 120.06098 * 179.73090 * 18 17 14 20 20 C 1.38813 * 119.93618 * 0.56404 * 19 18 17 21 21 N 1.40263 * 120.06748 * 179.68578 * 20 19 18 22 22 C 1.35063 * 127.38628 * 359.72835 * 21 20 19 23 23 N 1.30733 * 107.27674 * 179.90279 * 22 21 20 24 24 N 1.28424 * 110.64562 * 0.38099 * 23 22 21 25 25 N 1.28948 * 110.20320 * 359.76448 * 24 23 22 26 26 C 1.38824 * 119.87084 * 359.71396 * 20 19 18 27 27 C 1.38124 * 119.93291 * 359.97438 * 26 20 19 28 28 H 1.08999 * 109.46900 * 295.27594 * 1 2 3 29 29 H 1.08997 * 109.47014 * 55.27281 * 1 2 3 30 30 H 1.08998 * 109.47131 * 175.27533 * 1 2 3 31 31 H 1.08996 * 109.47249 * 239.99618 * 2 1 3 32 32 H 1.09004 * 109.46950 * 119.99711 * 2 1 3 33 33 H 0.97007 * 120.00087 * 180.02562 * 8 7 5 34 34 H 0.96994 * 120.00281 * 324.19480 * 13 3 2 35 35 H 1.07993 * 119.96720 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.02910 * 180.30082 * 19 18 17 37 37 H 1.08001 * 126.36311 * 0.02562 * 22 21 20 38 38 H 1.08002 * 120.02994 * 180.02562 * 26 20 19 39 39 H 1.08000 * 119.96347 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6075 1.9809 0.8433 5 6 3.5422 1.4442 0.1201 6 1 4.1456 1.8894 -0.6571 7 6 4.1463 0.8773 1.2223 8 7 3.4116 0.3356 2.1690 9 14 6.0084 0.8788 1.3709 10 1 6.4480 2.1112 2.0733 11 1 6.4443 -0.3129 2.1423 12 1 6.6132 0.8394 0.0152 13 7 1.6494 2.0984 -1.2503 14 16 1.2333 3.7014 -1.2495 15 8 0.2869 3.8697 -0.2030 16 8 0.9667 4.0474 -2.6017 17 6 2.6657 4.6118 -0.7761 18 6 2.8978 4.8880 0.5588 19 6 4.0227 5.5966 0.9333 20 6 4.9146 6.0417 -0.0328 21 7 6.0544 6.7672 0.3439 22 6 6.4263 7.1195 1.5936 23 7 7.5483 7.7828 1.4924 24 7 7.9070 7.8807 0.2631 25 7 7.0515 7.2891 -0.4989 26 6 4.6760 5.7678 -1.3727 27 6 3.5527 5.0532 -1.7407 28 1 -0.3633 0.4388 0.9293 29 1 -0.3633 0.5854 -0.8446 30 1 -0.3633 -1.0241 -0.0846 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8365 -0.0629 2.9446 34 1 1.6344 1.5939 -2.0786 35 1 2.2013 4.5453 1.3096 36 1 4.2059 5.8079 1.9765 37 1 5.8963 6.8934 2.5071 38 1 5.3684 6.1125 -2.1264 39 1 3.3668 4.8395 -2.7828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273972730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:23 Heat of formation + Delta-G solvation = 72.786419 kcal Electronic energy + Delta-G solvation = -27237.283865 eV Core-core repulsion = 23310.054341 eV Total energy + Delta-G solvation = -3927.229524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.42387 -39.55619 -36.90504 -36.07355 -35.49856 -35.30603 -32.60684 -32.38513 -31.25394 -30.74095 -30.41389 -26.80138 -25.48189 -24.20262 -23.17414 -22.48141 -21.95314 -20.30336 -19.23553 -18.91163 -17.69601 -16.92112 -16.82869 -16.70496 -16.41959 -15.79143 -15.23055 -14.68905 -14.61037 -14.04340 -13.71799 -13.66576 -13.62533 -13.43514 -13.18754 -13.08512 -12.54457 -12.00487 -11.84524 -11.80699 -11.71550 -11.65622 -11.40188 -11.34201 -11.31176 -11.17505 -10.97065 -10.77072 -10.74284 -10.39702 -9.97325 -9.94390 -9.81426 -9.23621 -9.09656 -8.64181 -8.39809 -6.28506 -4.38265 -0.04875 0.87178 1.13572 1.28248 1.50536 2.02505 3.07832 3.18891 3.20978 3.24824 3.60575 3.79340 4.00684 4.16675 4.19494 4.47674 4.55767 4.62487 4.94969 5.01098 5.09565 5.13191 5.23040 5.41680 5.60582 5.75608 5.94227 6.03596 6.05217 6.14049 6.15648 6.26761 6.44105 6.60037 6.73970 6.90846 7.04392 7.43193 7.50140 7.71316 7.87676 8.06545 8.13575 8.66274 9.29971 10.74908 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004941 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.038237 B = 5665.985359 C = 7400.683732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.273 3.727 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.274 1.274 13 N -1.098 6.098 14 S 2.695 3.305 15 O -0.961 6.961 16 O -0.980 6.980 17 C -0.648 4.648 18 C 0.030 3.970 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.328 5.328 22 C 0.233 3.767 23 N -0.332 5.332 24 N -0.037 5.037 25 N -0.074 5.074 26 C -0.128 4.128 27 C 0.003 3.997 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.242 0.758 38 H 0.145 0.855 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 7.188 -1.966 7.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.859 5.859 14 S 2.782 3.218 15 O -0.951 6.951 16 O -0.970 6.970 17 C -0.733 4.733 18 C 0.010 3.990 19 C -0.162 4.162 20 C 0.079 3.921 21 N -0.118 5.118 22 C -0.064 4.064 23 N -0.181 5.181 24 N -0.032 5.032 25 N -0.059 5.059 26 C -0.149 4.149 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.258 0.742 38 H 0.163 0.837 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.844 8.189 -2.473 8.596 hybrid contribution 1.244 -0.776 0.469 1.539 sum 0.400 7.413 -2.004 7.690 Atomic orbital electron populations 1.21843 0.98721 0.99397 1.00797 1.21806 0.92263 0.98875 1.03231 1.18685 0.94218 0.90967 0.79197 0.93014 1.21543 0.91358 1.38816 1.05761 0.91973 1.24835 0.97879 0.94832 0.95603 1.69840 1.35026 1.37685 1.09449 0.86688 0.85823 0.77749 0.78353 1.20829 1.20913 1.19874 1.55482 1.85856 1.26045 1.18492 1.01749 0.73805 0.73226 0.73015 1.93573 1.57260 1.85966 1.58259 1.93538 1.84375 1.83762 1.35322 1.31316 1.23627 1.17068 1.01337 1.20779 0.94394 0.89229 0.94588 1.20914 0.94947 1.01685 0.98619 1.17806 0.84114 0.94789 0.95416 1.49175 1.18487 1.37729 1.06382 1.27531 0.93840 0.93902 0.91161 1.74493 1.11464 1.19900 1.12212 1.78068 1.17415 1.11498 0.96182 1.82667 0.95288 1.12565 1.15387 1.20954 0.99260 1.01091 0.93608 1.20791 0.90384 0.90954 0.99579 0.93296 0.94207 0.94562 0.94114 0.87630 0.92440 0.75819 0.82547 0.84135 0.74240 0.83696 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.85 37.16 0.37 -2.28 16 2 C -0.12 -2.45 5.38 -26.73 -0.14 -2.59 16 3 C 0.27 5.60 2.28 -69.08 -0.16 5.44 16 4 H 0.05 1.15 7.53 -51.93 -0.39 0.76 16 5 C -0.54 -12.02 8.84 -34.44 -0.30 -12.33 16 6 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -21.61 11.30 55.43 0.63 -20.98 16 9 Si 0.89 19.16 29.54 -169.99 -5.02 14.14 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -1.10 -18.85 4.82 -5.88 -0.03 -18.88 16 14 S 2.69 44.62 5.71 -107.50 -0.61 44.01 16 15 O -0.96 -18.03 16.65 -57.17 -0.95 -18.99 16 16 O -0.98 -17.07 17.28 -57.17 -0.99 -18.06 16 17 C -0.65 -9.83 5.93 -39.55 -0.23 -10.06 16 18 C 0.03 0.43 9.51 -39.61 -0.38 0.05 16 19 C -0.14 -1.74 9.49 -39.41 -0.37 -2.12 16 20 C 0.17 2.27 6.70 -83.57 -0.56 1.71 16 21 N -0.33 -4.32 3.85 -11.74 -0.05 -4.37 16 22 C 0.23 2.59 12.16 -90.16 -1.10 1.49 16 23 N -0.33 -4.58 12.15 29.64 0.36 -4.22 16 24 N -0.04 -0.56 13.39 60.35 0.81 0.25 16 25 N -0.07 -1.10 13.34 60.35 0.80 -0.30 16 26 C -0.13 -1.69 9.70 -39.41 -0.38 -2.08 16 27 C 0.00 0.04 9.51 -39.61 -0.38 -0.34 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.65 7.62 -51.93 -0.40 0.26 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 2.40 5.96 -51.93 -0.31 2.09 16 33 H 0.27 6.30 8.31 -40.82 -0.34 5.97 16 34 H 0.41 6.17 8.84 -34.48 -0.30 5.86 16 35 H 0.16 2.19 7.60 -52.49 -0.40 1.79 16 36 H 0.14 1.24 6.88 -52.49 -0.36 0.87 16 37 H 0.24 1.42 7.19 -52.49 -0.38 1.04 16 38 H 0.15 1.72 7.77 -52.49 -0.41 1.31 16 39 H 0.15 1.78 7.61 -52.49 -0.40 1.38 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.77 351.54 -7.64 -37.41 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.16 Total: 6.18 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.73 Total: -21.50 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 2.53 Total: -48.49 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.94 Total: -37.04 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -0.61 Total: 44.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.77 -7.64 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273972730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.199 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds