Wall clock time and date at job start Tue Mar 31 2020 19:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47395 * 2 1 4 4 H 1.09002 * 109.47436 * 55.14584 * 3 2 1 5 5 C 1.50698 * 109.47478 * 175.15065 * 3 2 1 6 6 H 1.07995 * 119.99950 * 119.99633 * 5 3 2 7 7 C 1.37878 * 119.99864 * 299.99907 * 5 3 2 8 8 N 1.31515 * 119.99979 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00020 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47027 * 89.99672 * 9 7 5 11 11 H 1.48499 * 109.46962 * 209.99613 * 9 7 5 12 12 H 1.48494 * 109.47051 * 329.99897 * 9 7 5 13 13 N 1.46500 * 109.46674 * 295.14731 * 3 2 1 14 14 S 1.65612 * 119.99692 * 144.18830 * 13 3 2 15 15 O 1.42095 * 106.39988 * 310.45430 * 14 13 3 16 16 O 1.42105 * 106.39745 * 177.53650 * 14 13 3 17 17 C 1.76200 * 107.21544 * 63.99617 * 14 13 3 18 18 C 1.38276 * 119.93392 * 269.72280 * 17 14 13 19 19 C 1.38125 * 120.06098 * 179.73090 * 18 17 14 20 20 C 1.38813 * 119.93618 * 0.56404 * 19 18 17 21 21 N 1.40263 * 120.06748 * 179.68578 * 20 19 18 22 22 C 1.35063 * 127.38628 * 359.72835 * 21 20 19 23 23 N 1.30733 * 107.27674 * 179.90279 * 22 21 20 24 24 N 1.28424 * 110.64562 * 0.38099 * 23 22 21 25 25 N 1.28948 * 110.20320 * 359.76448 * 24 23 22 26 26 C 1.38824 * 119.87084 * 359.71396 * 20 19 18 27 27 C 1.38124 * 119.93291 * 359.97438 * 26 20 19 28 28 H 1.08999 * 109.46900 * 295.27594 * 1 2 3 29 29 H 1.08997 * 109.47014 * 55.27281 * 1 2 3 30 30 H 1.08998 * 109.47131 * 175.27533 * 1 2 3 31 31 H 1.08996 * 109.47249 * 239.99618 * 2 1 3 32 32 H 1.09004 * 109.46950 * 119.99711 * 2 1 3 33 33 H 0.97007 * 120.00087 * 180.02562 * 8 7 5 34 34 H 0.96994 * 120.00281 * 324.19480 * 13 3 2 35 35 H 1.07993 * 119.96720 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.02910 * 180.30082 * 19 18 17 37 37 H 1.08001 * 126.36311 * 0.02562 * 22 21 20 38 38 H 1.08002 * 120.02994 * 180.02562 * 26 20 19 39 39 H 1.08000 * 119.96347 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6075 1.9809 0.8433 5 6 3.5422 1.4442 0.1201 6 1 4.1456 1.8894 -0.6571 7 6 4.1463 0.8773 1.2223 8 7 3.4116 0.3356 2.1690 9 14 6.0084 0.8788 1.3709 10 1 6.4480 2.1112 2.0733 11 1 6.4443 -0.3129 2.1423 12 1 6.6132 0.8394 0.0152 13 7 1.6494 2.0984 -1.2503 14 16 1.2333 3.7014 -1.2495 15 8 0.2869 3.8697 -0.2030 16 8 0.9667 4.0474 -2.6017 17 6 2.6657 4.6118 -0.7761 18 6 2.8978 4.8880 0.5588 19 6 4.0227 5.5966 0.9333 20 6 4.9146 6.0417 -0.0328 21 7 6.0544 6.7672 0.3439 22 6 6.4263 7.1195 1.5936 23 7 7.5483 7.7828 1.4924 24 7 7.9070 7.8807 0.2631 25 7 7.0515 7.2891 -0.4989 26 6 4.6760 5.7678 -1.3727 27 6 3.5527 5.0532 -1.7407 28 1 -0.3633 0.4388 0.9293 29 1 -0.3633 0.5854 -0.8446 30 1 -0.3633 -1.0241 -0.0846 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8365 -0.0629 2.9446 34 1 1.6344 1.5939 -2.0786 35 1 2.2013 4.5453 1.3096 36 1 4.2059 5.8079 1.9765 37 1 5.8963 6.8934 2.5071 38 1 5.3684 6.1125 -2.1264 39 1 3.3668 4.8395 -2.7828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273972730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:22 Heat of formation + Delta-G solvation = 53.433474 kcal Electronic energy + Delta-G solvation = -27238.123071 eV Core-core repulsion = 23310.054341 eV Total energy + Delta-G solvation = -3928.068730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.43672 -40.59701 -38.31300 -37.62647 -36.87898 -36.37312 -34.10863 -33.62018 -32.28891 -32.20897 -31.48489 -28.48203 -26.51703 -25.22806 -24.81099 -23.53376 -22.98570 -21.87722 -20.53249 -19.91443 -19.00338 -18.47240 -18.20940 -17.84611 -17.32589 -17.13869 -16.69429 -16.03296 -15.70162 -15.46441 -14.95341 -14.79934 -14.73098 -14.67868 -14.54002 -14.43810 -13.61365 -13.53509 -13.34291 -13.15313 -13.06544 -13.04354 -12.89368 -12.75048 -12.61913 -12.43870 -12.34351 -12.15159 -11.97804 -11.76563 -11.57958 -11.51871 -11.38300 -10.42579 -10.26127 -10.19748 -9.93129 -8.07293 -6.19664 -1.08028 -0.43110 0.10526 0.21807 0.52415 1.03717 1.36210 1.45556 1.49246 2.07611 2.33566 2.46379 2.86958 2.87402 3.17773 3.20931 3.35706 3.55809 3.68138 3.84153 4.06996 4.10405 4.28068 4.35305 4.54416 4.62351 4.65488 4.74960 4.80423 4.88949 4.94881 4.99286 5.14618 5.19265 5.42154 5.48975 5.57758 5.72487 5.85223 6.07879 6.28173 6.49025 6.89830 7.11475 7.49791 8.95192 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004941 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.038237 B = 5665.985359 C = 7400.683732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.034 0.966 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.905 5.905 9 Si 0.927 3.073 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -1.097 6.097 14 S 2.710 3.290 15 O -0.986 6.986 16 O -0.989 6.989 17 C -0.661 4.661 18 C 0.013 3.987 19 C -0.133 4.133 20 C 0.169 3.831 21 N -0.334 5.334 22 C 0.249 3.751 23 N -0.352 5.352 24 N -0.054 5.054 25 N -0.093 5.093 26 C -0.133 4.133 27 C -0.001 4.001 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.263 0.737 34 H 0.418 0.582 35 H 0.156 0.844 36 H 0.180 0.820 37 H 0.291 0.709 38 H 0.156 0.844 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 7.677 -1.769 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.051 0.949 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.544 5.544 9 Si 0.755 3.245 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.858 5.858 14 S 2.800 3.200 15 O -0.976 6.976 16 O -0.979 6.979 17 C -0.749 4.749 18 C -0.007 4.007 19 C -0.154 4.154 20 C 0.076 3.924 21 N -0.124 5.124 22 C -0.047 4.047 23 N -0.201 5.201 24 N -0.049 5.049 25 N -0.078 5.078 26 C -0.153 4.153 27 C -0.021 4.021 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.198 0.802 37 H 0.306 0.694 38 H 0.173 0.827 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.575 8.666 -2.303 8.985 hybrid contribution 1.173 -0.873 0.408 1.517 sum 0.598 7.793 -1.896 8.042 Atomic orbital electron populations 1.21777 0.96876 1.00815 1.00774 1.21708 0.93973 0.98312 1.02176 1.18399 0.93107 0.91201 0.79828 0.94862 1.21742 0.92392 1.37595 1.05178 0.92087 1.25284 1.00039 0.95160 0.95800 1.69936 1.35824 1.38739 1.09864 0.86052 0.83184 0.77544 0.77754 1.20249 1.21545 1.20424 1.55291 1.85866 1.26654 1.17964 1.01073 0.73805 0.72795 0.72315 1.93537 1.58911 1.86185 1.58938 1.93521 1.84864 1.83724 1.35779 1.31029 1.23446 1.18112 1.02289 1.20935 0.95378 0.90081 0.94299 1.21254 0.93531 1.00137 1.00474 1.17942 0.84186 0.94566 0.95665 1.49192 1.18278 1.37951 1.06945 1.28518 0.92781 0.91593 0.91800 1.74455 1.12860 1.21044 1.11761 1.78061 1.17938 1.11961 0.96915 1.82634 0.95877 1.13214 1.16090 1.21138 0.99183 1.00779 0.94249 1.20977 0.90227 0.90839 1.00082 0.94241 0.93098 0.92638 0.93575 0.90245 0.92693 0.74719 0.82651 0.80246 0.69400 0.82665 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.85 71.98 0.71 -4.26 16 2 C -0.12 -4.83 5.38 30.59 0.16 -4.67 16 3 C 0.28 11.33 2.28 44.24 0.10 11.43 16 4 H 0.03 1.49 7.53 -2.39 -0.02 1.47 16 5 C -0.53 -23.34 8.84 25.60 0.23 -23.12 16 6 H 0.06 2.67 7.81 -2.91 -0.02 2.64 16 7 C 0.04 1.77 5.29 84.65 0.45 2.22 16 8 N -0.90 -44.19 11.30 21.45 0.24 -43.95 16 9 Si 0.93 38.40 29.54 68.60 2.03 40.43 16 10 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 N -1.10 -36.77 4.82 -172.52 -0.83 -37.60 16 14 S 2.71 87.85 5.71 -56.49 -0.32 87.53 16 15 O -0.99 -36.76 16.65 -128.00 -2.13 -38.89 16 16 O -0.99 -33.46 17.28 -128.00 -2.21 -35.67 16 17 C -0.66 -19.26 5.93 22.29 0.13 -19.13 16 18 C 0.01 0.35 9.51 22.25 0.21 0.57 16 19 C -0.13 -2.92 9.49 22.38 0.21 -2.71 16 20 C 0.17 4.05 6.70 38.07 0.26 4.31 16 21 N -0.33 -7.96 3.85 -191.06 -0.74 -8.69 16 22 C 0.25 4.71 12.16 180.19 2.19 6.90 16 23 N -0.35 -8.98 12.15 -60.14 -0.73 -9.71 16 24 N -0.05 -1.57 13.39 37.02 0.50 -1.08 16 25 N -0.09 -2.62 13.34 37.02 0.49 -2.13 16 26 C -0.13 -3.27 9.70 22.38 0.22 -3.05 16 27 C 0.00 -0.04 9.51 22.25 0.21 0.17 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.60 7.62 -2.39 -0.02 1.58 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 3.62 5.96 -2.38 -0.01 3.61 16 33 H 0.26 12.50 8.31 -92.70 -0.77 11.73 16 34 H 0.42 12.16 8.84 -96.75 -0.86 11.30 16 35 H 0.16 4.21 7.60 -2.91 -0.02 4.19 16 36 H 0.18 2.35 6.88 -2.91 -0.02 2.33 16 37 H 0.29 1.94 7.19 -2.91 -0.02 1.92 16 38 H 0.16 3.43 7.77 -2.91 -0.02 3.41 16 39 H 0.17 3.65 7.61 -2.91 -0.02 3.62 16 Total: -1.00 -63.06 351.54 1.63 -61.43 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.26 Total: 19.66 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 5.08 Total: -31.32 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -1.07 Total: -103.17 kcal Atomic # 8 Polarization: -70.21 SS G_CDS: -4.34 Total: -74.56 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 87.85 SS G_CDS: -0.32 Total: 87.53 kcal Total: -63.06 1.63 -61.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273972730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.865 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds