Wall clock time and date at job start Tue Mar 31 2020 20:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00122 * 2 1 4 4 C 1.50699 * 109.47187 * 180.02562 * 3 2 1 5 5 C 1.33408 * 125.96755 * 89.99696 * 4 3 2 6 6 N 1.32019 * 114.57098 * 180.02562 * 5 4 3 7 7 C 1.29620 * 116.90860 * 0.02562 * 6 5 4 8 8 N 1.38995 * 124.94645 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99961 * 0.02764 * 8 7 6 10 10 O 1.21585 * 119.99760 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00129 * 179.97438 * 9 8 7 12 12 C 1.40183 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.40399 * 125.97280 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.87195 * 179.73423 * 13 12 11 15 15 N 1.34966 * 107.85507 * 0.36359 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.89559 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31212 * 125.97493 * 179.97438 * 12 11 9 26 26 S 1.70971 * 110.11087 * 0.23034 * 7 6 5 27 27 H 1.08998 * 109.47126 * 59.99796 * 1 2 3 28 28 H 1.09002 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47514 * 300.00111 * 1 2 3 30 30 H 1.09003 * 109.46712 * 60.00123 * 3 2 1 31 31 H 1.09001 * 109.46723 * 300.00250 * 3 2 1 32 32 H 1.07999 * 122.71497 * 0.02913 * 5 4 3 33 33 H 0.97000 * 120.00153 * 180.02562 * 8 7 6 34 34 H 0.97008 * 119.99937 * 0.02562 * 11 9 8 35 35 H 1.08002 * 126.06561 * 359.97438 * 13 12 11 36 36 H 1.07993 * 126.07596 * 180.22688 * 14 13 12 37 37 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 38 38 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 39 39 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2932 1.1247 -1.0807 6 7 5.5834 1.0220 -0.8204 7 6 5.9294 0.9935 0.4285 8 7 7.2361 0.8887 0.8904 9 6 8.2565 0.8083 0.0134 10 8 8.0338 0.8279 -1.1817 11 7 9.5236 0.7073 0.4613 12 6 10.5848 0.6231 -0.4508 13 6 10.4722 0.6331 -1.8502 14 6 11.7182 0.5399 -2.3675 15 7 12.5888 0.4651 -1.3389 16 6 14.0451 0.3505 -1.4505 17 6 14.6976 1.4661 -0.6753 18 1 14.0884 2.1879 -0.1515 19 6 16.0721 1.5652 -0.6347 20 7 16.8140 0.6831 -1.2680 21 14 16.8810 2.9475 0.3268 22 1 18.3572 2.8280 0.2186 23 1 16.4482 4.2554 -0.2279 24 1 16.4804 2.8581 1.7539 25 7 11.8570 0.5222 -0.1459 26 16 4.5438 1.0963 1.4248 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9014 1.1563 -2.0866 33 1 7.4138 0.8735 1.8438 34 1 9.7012 0.6920 1.4148 35 1 9.5537 0.7065 -2.4137 36 1 11.9716 0.5254 -3.4172 37 1 14.3356 0.4184 -2.4989 38 1 14.3661 -0.6093 -1.0459 39 1 16.3941 -0.0349 -1.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287669071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:21 Heat of formation + Delta-G solvation = 78.496446 kcal Electronic energy + Delta-G solvation = -24805.280024 eV Core-core repulsion = 20878.298106 eV Total energy + Delta-G solvation = -3926.981918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12343 -40.32088 -39.31440 -38.16761 -35.40199 -34.82339 -33.67758 -31.61471 -30.75993 -29.40100 -27.50725 -26.54197 -25.86335 -24.57225 -23.22261 -22.40092 -21.03761 -20.35637 -19.70073 -19.14517 -17.60928 -17.21440 -17.18498 -16.93493 -16.42162 -16.04670 -15.84754 -15.52830 -15.01772 -14.72916 -14.52562 -14.29029 -13.98344 -13.78300 -13.19784 -13.07765 -12.81346 -12.48808 -12.32091 -11.99180 -11.85005 -11.69760 -11.23901 -11.12421 -10.81301 -10.51372 -10.39425 -10.21926 -10.16726 -9.92624 -9.56891 -9.48652 -9.02093 -8.59596 -8.56679 -8.22373 -7.53097 -6.58551 -4.32708 0.37081 0.54992 1.30111 2.09137 2.38856 2.67183 3.03055 3.23253 3.37487 3.38928 3.48318 3.58148 3.70195 3.93192 4.39130 4.41220 4.53600 4.58024 4.83958 4.87687 4.92316 5.15019 5.21005 5.33366 5.38747 5.52014 5.68233 5.84075 6.07459 6.27032 6.41832 6.58898 6.60483 6.66420 6.76406 7.28400 7.44761 7.62721 7.77809 7.82367 8.33183 8.33554 8.51720 8.60964 9.35525 10.79004 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.001806 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.928622 B =15498.089894 C =15937.986534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.148 3.852 4 C -0.261 4.261 5 C 0.101 3.899 6 N -0.475 5.475 7 C 0.302 3.698 8 N -0.640 5.640 9 C 0.707 3.293 10 O -0.501 6.501 11 N -0.636 5.636 12 C 0.275 3.725 13 C -0.283 4.283 14 C 0.053 3.947 15 N -0.317 5.317 16 C 0.249 3.751 17 C -0.609 4.609 18 H 0.063 0.937 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.077 2.923 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.301 5.301 26 S 0.139 5.861 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.180 0.820 33 H 0.420 0.580 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.282 0.835 5.694 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.069 3.931 4 C -0.383 4.383 5 C -0.052 4.052 6 N -0.196 5.196 7 C -0.068 4.068 8 N -0.294 5.294 9 C 0.403 3.597 10 O -0.368 6.368 11 N -0.287 5.287 12 C 0.022 3.978 13 C -0.314 4.314 14 C -0.097 4.097 15 N -0.099 5.099 16 C 0.131 3.869 17 C -0.647 4.647 18 H 0.082 0.918 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.904 3.096 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.132 5.132 26 S 0.389 5.611 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.197 0.803 33 H 0.257 0.743 34 H 0.244 0.756 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.516 1.194 6.611 29.297 hybrid contribution -2.296 -0.417 -0.921 2.509 sum -30.813 0.778 5.689 31.343 Atomic orbital electron populations 1.22776 0.80593 1.03123 1.00127 1.88010 1.19819 1.27305 1.95440 1.20517 0.85818 0.85267 1.01499 1.25246 0.99459 1.19316 0.94304 1.21651 0.86004 0.97414 1.00134 1.66649 1.17062 1.20018 1.15837 1.23293 0.89871 1.01307 0.92330 1.42041 1.01514 1.75589 1.10293 1.15566 0.79654 0.79220 0.85268 1.91014 1.81855 1.51500 1.12428 1.41224 1.02381 1.75860 1.09217 1.18692 0.86759 1.03414 0.88985 1.21539 0.98465 1.19400 0.91990 1.22558 0.89642 1.02358 0.95149 1.48780 1.07889 1.51976 1.01221 1.19770 0.69539 0.99064 0.98515 1.22106 0.94232 1.13114 1.35230 0.91834 1.25921 0.93733 1.01417 0.97100 1.70851 1.38689 1.14246 1.30194 0.83416 0.76069 0.74389 0.75730 1.20518 1.21245 1.21168 1.77345 1.00408 1.28027 1.07429 1.83857 0.96313 1.71374 1.09512 0.93778 0.89356 0.93929 0.92064 0.90845 0.80305 0.74251 0.75606 0.81922 0.81405 0.93551 0.94740 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.19 10.69 -35.23 -0.38 -3.56 16 3 C 0.15 0.98 6.46 36.01 0.23 1.21 16 4 C -0.26 -2.35 6.21 -36.00 -0.22 -2.57 16 5 C 0.10 1.09 11.24 -19.16 -0.22 0.88 16 6 N -0.48 -6.67 8.65 -15.12 -0.13 -6.80 16 7 C 0.30 3.53 8.02 -87.36 -0.70 2.83 16 8 N -0.64 -6.91 5.41 -17.48 -0.09 -7.00 16 9 C 0.71 10.63 8.50 -86.92 -0.74 9.89 16 10 O -0.50 -9.44 12.10 5.29 0.06 -9.38 16 11 N -0.64 -9.64 5.45 -15.51 -0.08 -9.72 16 12 C 0.28 5.52 8.11 -154.37 -1.25 4.26 16 13 C -0.28 -5.69 9.60 -39.84 -0.38 -6.07 16 14 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 15 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 16 C 0.25 6.30 5.57 -5.19 -0.03 6.28 16 17 C -0.61 -17.10 9.24 -34.44 -0.32 -17.42 16 18 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -26.30 13.65 55.43 0.76 -25.54 16 21 Si 1.08 24.86 29.90 -169.99 -5.08 19.77 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 N -0.30 -6.92 12.42 31.44 0.39 -6.53 16 26 S 0.14 1.15 23.22 -107.50 -2.50 -1.35 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.42 2.67 8.83 -40.82 -0.36 2.31 16 34 H 0.41 4.72 8.84 -40.82 -0.36 4.36 16 35 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 36 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 39 H 0.27 7.60 7.22 -40.82 -0.29 7.30 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -37.04 358.72 -9.01 -46.04 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.32 Total: 4.33 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.81 Total: 1.96 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.61 Total: -63.22 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.31 Total: -12.94 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.50 Total: -1.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.04 -9.01 -46.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287669071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.541 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds