Wall clock time and date at job start Tue Mar 31 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00122 * 2 1 4 4 C 1.50699 * 109.47187 * 180.02562 * 3 2 1 5 5 C 1.33408 * 125.96755 * 89.99696 * 4 3 2 6 6 N 1.32019 * 114.57098 * 180.02562 * 5 4 3 7 7 C 1.29620 * 116.90860 * 0.02562 * 6 5 4 8 8 N 1.38995 * 124.94645 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99961 * 0.02764 * 8 7 6 10 10 O 1.21585 * 119.99760 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00129 * 179.97438 * 9 8 7 12 12 C 1.40183 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.40399 * 125.97280 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.87195 * 179.73423 * 13 12 11 15 15 N 1.34966 * 107.85507 * 0.36359 * 14 13 12 16 16 C 1.46500 * 125.97782 * 179.89559 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31212 * 125.97493 * 179.97438 * 12 11 9 26 26 S 1.70971 * 110.11087 * 0.23034 * 7 6 5 27 27 H 1.08998 * 109.47126 * 59.99796 * 1 2 3 28 28 H 1.09002 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47514 * 300.00111 * 1 2 3 30 30 H 1.09003 * 109.46712 * 60.00123 * 3 2 1 31 31 H 1.09001 * 109.46723 * 300.00250 * 3 2 1 32 32 H 1.07999 * 122.71497 * 0.02913 * 5 4 3 33 33 H 0.97000 * 120.00153 * 180.02562 * 8 7 6 34 34 H 0.97008 * 119.99937 * 0.02562 * 11 9 8 35 35 H 1.08002 * 126.06561 * 359.97438 * 13 12 11 36 36 H 1.07993 * 126.07596 * 180.22688 * 14 13 12 37 37 H 1.09004 * 109.47078 * 4.71821 * 16 15 14 38 38 H 1.08993 * 109.47364 * 244.71592 * 16 15 14 39 39 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2932 1.1247 -1.0807 6 7 5.5834 1.0220 -0.8204 7 6 5.9294 0.9935 0.4285 8 7 7.2361 0.8887 0.8904 9 6 8.2565 0.8083 0.0134 10 8 8.0338 0.8279 -1.1817 11 7 9.5236 0.7073 0.4613 12 6 10.5848 0.6231 -0.4508 13 6 10.4722 0.6331 -1.8502 14 6 11.7182 0.5399 -2.3675 15 7 12.5888 0.4651 -1.3389 16 6 14.0451 0.3505 -1.4505 17 6 14.6976 1.4661 -0.6753 18 1 14.0884 2.1879 -0.1515 19 6 16.0721 1.5652 -0.6347 20 7 16.8140 0.6831 -1.2680 21 14 16.8810 2.9475 0.3268 22 1 18.3572 2.8280 0.2186 23 1 16.4482 4.2554 -0.2279 24 1 16.4804 2.8581 1.7539 25 7 11.8570 0.5222 -0.1459 26 16 4.5438 1.0963 1.4248 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9014 1.1563 -2.0866 33 1 7.4138 0.8735 1.8438 34 1 9.7012 0.6920 1.4148 35 1 9.5537 0.7065 -2.4137 36 1 11.9716 0.5254 -3.4172 37 1 14.3356 0.4184 -2.4989 38 1 14.3661 -0.6093 -1.0459 39 1 16.3941 -0.0349 -1.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287669071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:20 Heat of formation + Delta-G solvation = 52.182868 kcal Electronic energy + Delta-G solvation = -24806.421066 eV Core-core repulsion = 20878.298106 eV Total energy + Delta-G solvation = -3928.122961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46664 -41.57802 -40.32061 -38.72062 -36.63690 -36.14017 -35.55978 -32.80862 -32.05514 -31.04204 -28.46004 -27.85628 -26.74522 -25.50877 -24.90125 -23.57756 -22.46281 -21.76759 -20.67871 -20.30772 -19.23616 -18.62835 -18.23785 -17.69781 -17.45165 -17.12826 -16.69217 -16.37225 -16.12916 -16.01984 -15.84014 -15.60702 -15.31423 -15.09250 -14.95049 -14.20469 -13.95042 -13.71762 -13.49809 -13.36247 -13.23064 -12.63151 -12.49090 -12.33726 -12.17016 -11.94937 -11.88893 -11.80184 -11.42145 -11.01438 -10.69089 -10.68554 -10.42737 -10.29602 -9.87990 -9.43341 -9.14885 -8.76970 -6.55373 -0.41869 -0.24635 0.56561 0.93041 0.97876 1.48238 1.52152 1.58254 1.79089 1.84763 1.88147 2.30233 2.49041 2.72059 3.01426 3.01991 3.54192 3.84851 3.96426 4.07387 4.11313 4.43370 4.52993 4.56736 4.59519 4.60849 4.68314 4.74366 4.78116 4.82772 4.92298 4.99953 5.24774 5.41106 5.58026 5.78385 5.91682 6.18311 6.26131 6.31845 6.41601 6.79204 6.98389 7.19524 7.20445 8.59037 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.001806 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.928622 B =15498.089894 C =15937.986534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.144 3.856 4 C -0.255 4.255 5 C 0.075 3.925 6 N -0.521 5.521 7 C 0.265 3.735 8 N -0.623 5.623 9 C 0.710 3.290 10 O -0.541 6.541 11 N -0.625 5.625 12 C 0.287 3.713 13 C -0.290 4.290 14 C 0.058 3.942 15 N -0.342 5.342 16 C 0.259 3.741 17 C -0.623 4.623 18 H 0.046 0.954 19 C -0.019 4.019 20 N -0.923 5.923 21 Si 1.120 2.880 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.274 1.274 25 N -0.340 5.340 26 S 0.216 5.784 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.190 0.810 33 H 0.441 0.559 34 H 0.426 0.574 35 H 0.166 0.834 36 H 0.202 0.798 37 H 0.054 0.946 38 H 0.018 0.982 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.546 1.770 7.023 34.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.066 3.934 4 C -0.378 4.378 5 C -0.077 4.077 6 N -0.242 5.242 7 C -0.103 4.103 8 N -0.279 5.279 9 C 0.406 3.594 10 O -0.411 6.411 11 N -0.279 5.279 12 C 0.032 3.968 13 C -0.321 4.321 14 C -0.090 4.090 15 N -0.124 5.124 16 C 0.140 3.860 17 C -0.661 4.661 18 H 0.065 0.935 19 C -0.218 4.218 20 N -0.559 5.559 21 Si 0.941 3.059 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.200 1.200 25 N -0.171 5.171 26 S 0.467 5.533 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.207 0.793 33 H 0.282 0.718 34 H 0.264 0.736 35 H 0.184 0.816 36 H 0.218 0.782 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.851 2.121 8.000 31.942 hybrid contribution -1.898 -0.738 -1.310 2.421 sum -32.749 1.383 6.690 33.454 Atomic orbital electron populations 1.22951 0.78866 1.03884 1.01385 1.87952 1.21769 1.28096 1.95725 1.20717 0.84089 0.85214 1.03404 1.25750 1.00984 1.16649 0.94406 1.21820 0.85439 0.99047 1.01372 1.66589 1.19006 1.20806 1.17807 1.23550 0.90695 1.02948 0.93152 1.41697 1.00606 1.74840 1.10724 1.15678 0.79919 0.78535 0.85262 1.90981 1.82518 1.53181 1.14418 1.41157 1.01597 1.75576 1.09526 1.18954 0.86919 1.01045 0.89930 1.21687 0.98496 1.19637 0.92286 1.23143 0.89145 1.00579 0.96152 1.48566 1.07382 1.54221 1.02214 1.19440 0.70988 0.97322 0.98263 1.22299 0.94608 1.13580 1.35565 0.93530 1.27276 0.94505 1.02841 0.97204 1.70947 1.38895 1.14848 1.31230 0.82873 0.75446 0.72413 0.75153 1.20041 1.19713 1.19979 1.77264 1.01578 1.30327 1.07945 1.83559 0.93216 1.69287 1.07244 0.92614 0.88960 0.92552 0.90083 0.89021 0.79344 0.71792 0.73591 0.81644 0.78166 0.92807 0.96429 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 11.01 113.37 1.25 1.42 16 2 O -0.42 -5.95 10.69 -148.98 -1.59 -7.55 16 3 C 0.14 1.54 6.46 71.24 0.46 2.00 16 4 C -0.26 -4.11 6.21 24.59 0.15 -3.96 16 5 C 0.08 1.58 11.24 83.57 0.94 2.52 16 6 N -0.52 -14.53 8.65 -201.77 -1.74 -16.27 16 7 C 0.26 5.93 8.02 179.21 1.44 7.36 16 8 N -0.62 -12.75 5.41 -327.47 -1.77 -14.53 16 9 C 0.71 21.06 8.50 179.05 1.52 22.58 16 10 O -0.54 -20.57 12.10 -3.98 -0.05 -20.62 16 11 N -0.63 -18.64 5.45 -321.25 -1.75 -20.39 16 12 C 0.29 11.52 8.11 133.32 1.08 12.60 16 13 C -0.29 -11.67 9.60 22.10 0.21 -11.46 16 14 C 0.06 2.33 11.44 83.52 0.96 3.28 16 15 N -0.34 -16.17 3.67 -351.85 -1.29 -17.46 16 16 C 0.26 13.38 5.57 85.64 0.48 13.86 16 17 C -0.62 -35.45 9.24 25.60 0.24 -35.21 16 18 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 19 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 20 N -0.92 -54.03 13.65 21.45 0.29 -53.73 16 21 Si 1.12 49.60 29.90 68.60 2.05 51.65 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 N -0.34 -15.82 12.42 -54.44 -0.68 -16.50 16 26 S 0.22 3.05 23.22 -56.49 -1.31 1.74 16 27 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.44 4.79 8.83 -92.71 -0.82 3.97 16 34 H 0.43 9.43 8.84 -92.70 -0.82 8.61 16 35 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 36 H 0.20 6.39 8.06 -2.91 -0.02 6.37 16 37 H 0.05 2.67 7.94 -2.39 -0.02 2.65 16 38 H 0.02 0.96 8.00 -2.39 -0.02 0.95 16 39 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 Total: -1.00 -81.17 358.72 0.93 -80.24 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.41 Total: 19.00 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 9.18 Total: 14.43 kcal Atomic # 7 Polarization: -131.95 SS G_CDS: -6.94 Total: -138.89 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.64 Total: -28.16 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -81.17 0.93 -80.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287669071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.420 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds