Wall clock time and date at job start Tue Mar 31 2020 19:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99803 * 2 1 4 4 N 1.46504 * 109.46813 * 125.00137 * 3 2 1 5 5 C 1.46497 * 119.99741 * 274.94859 * 4 3 2 6 6 C 1.50706 * 109.46822 * 263.11477 * 5 4 3 7 7 H 1.07993 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99549 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99528 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00455 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46976 * 89.99699 * 10 8 6 12 12 H 1.48491 * 109.47227 * 210.00037 * 10 8 6 13 13 H 1.48495 * 109.46922 * 330.00151 * 10 8 6 14 14 C 1.34769 * 119.99909 * 94.94611 * 4 3 2 15 15 O 1.21363 * 119.99876 * 3.69372 * 14 4 3 16 16 C 1.49363 * 120.00099 * 183.68889 * 14 4 3 17 17 O 1.21364 * 119.99809 * 354.26882 * 16 14 4 18 18 N 1.34781 * 120.00121 * 174.26824 * 16 14 4 19 19 C 1.39284 * 119.99980 * 180.02562 * 18 16 14 20 20 N 1.32400 * 119.68329 * 359.97438 * 19 18 16 21 21 C 1.31889 * 121.64450 * 179.97438 * 20 19 18 22 22 C 1.38258 * 120.83639 * 0.02562 * 21 20 19 23 23 Cl 1.73596 * 120.35671 * 180.02562 * 22 21 20 24 24 C 1.38894 * 119.28614 * 359.97438 * 22 21 20 25 25 C 1.38389 * 118.48258 * 0.02562 * 24 22 21 26 26 C 1.50709 * 120.43960 * 179.97438 * 25 24 22 27 27 H 1.07995 * 120.00208 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99588 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99683 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47054 * 5.00213 * 3 2 1 31 31 H 1.09000 * 109.46903 * 245.00104 * 3 2 1 32 32 H 1.08999 * 109.47821 * 23.11750 * 5 4 3 33 33 H 1.08999 * 109.47091 * 143.11748 * 5 4 3 34 34 H 0.97001 * 119.99989 * 180.02562 * 9 8 6 35 35 H 0.96993 * 119.99684 * 359.97438 * 18 16 14 36 36 H 1.08002 * 119.58468 * 180.28260 * 21 20 19 37 37 H 1.07994 * 120.75172 * 180.02562 * 24 22 21 38 38 H 1.08998 * 109.46841 * 90.00063 * 26 25 24 39 39 H 1.08991 * 109.47163 * 210.00460 * 26 25 24 40 40 H 1.09001 * 109.46851 * 330.00782 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5287 1.7631 2.4520 6 6 2.8688 3.2173 2.6542 7 1 3.3799 3.7654 1.8766 8 6 2.5275 3.8478 3.8319 9 7 2.8239 5.1169 4.0081 10 14 1.6442 2.8994 5.1772 11 1 2.6437 2.2832 6.0864 12 1 0.7779 3.8261 5.9490 13 1 0.8090 1.8348 4.5656 14 6 4.2774 0.9597 0.9574 15 8 4.6794 0.6668 -0.1496 16 6 5.2051 0.9079 2.1269 17 8 4.8336 1.2995 3.2139 18 7 6.4547 0.4263 1.9749 19 6 7.3196 0.3775 3.0656 20 7 6.9079 0.8064 4.2486 21 6 7.6941 0.7775 5.3072 22 6 8.9865 0.2947 5.2170 23 17 10.0104 0.2618 6.6185 24 6 9.4564 -0.1646 3.9934 25 6 8.6070 -0.1210 2.9017 26 6 9.0715 -0.6074 1.5530 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4489 1.6299 2.5184 33 1 3.0165 1.1654 3.2220 34 1 2.5842 5.5605 4.8368 35 1 6.7514 0.1131 1.1063 36 1 7.3223 1.1315 6.2573 37 1 10.4617 -0.5470 3.8962 38 1 8.8463 -1.6692 1.4525 39 1 8.5574 -0.0512 0.7693 40 1 10.1468 -0.4539 1.4620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293068378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:06 Heat of formation + Delta-G solvation = -3.039527 kcal Electronic energy + Delta-G solvation = -26802.067708 eV Core-core repulsion = 22837.213667 eV Total energy + Delta-G solvation = -3964.854041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36789 -41.22823 -39.45799 -37.80991 -37.51192 -36.07776 -35.02997 -34.65425 -33.91609 -31.64524 -30.08861 -28.59518 -27.96538 -25.95941 -24.66641 -23.65596 -22.96670 -21.42400 -20.63983 -19.41468 -19.08971 -18.67515 -17.73935 -17.47896 -17.09141 -17.04372 -16.56558 -16.12805 -15.93890 -15.77713 -15.30727 -15.13568 -14.77486 -14.38633 -14.19168 -14.15370 -13.91204 -13.87017 -13.69556 -13.19938 -13.16932 -12.99857 -12.87101 -12.69430 -12.33859 -12.20144 -12.17292 -11.95829 -11.71447 -11.63748 -10.93837 -10.72308 -10.67196 -10.41852 -9.98827 -9.68164 -9.24333 -8.27750 -6.29798 -0.32045 0.10508 0.54795 0.94235 1.08172 1.34738 1.42228 1.45623 1.49427 2.11340 2.36511 2.44377 2.65476 3.10305 3.10974 3.48212 3.64004 3.72724 3.81520 4.01369 4.11983 4.20681 4.45038 4.45307 4.63903 4.75743 4.77288 4.80175 4.83888 4.97832 5.02128 5.04667 5.22068 5.31166 5.46887 5.53555 5.66514 5.79097 5.83285 6.04943 6.30453 6.57209 6.67318 6.89029 7.07445 7.32674 8.89298 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.004015 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.025134 B = 6971.767569 C = 8855.037551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C 0.134 3.866 4 N -0.556 5.556 5 C 0.208 3.792 6 C -0.514 4.514 7 H 0.025 0.975 8 C 0.024 3.976 9 N -0.946 5.946 10 Si 0.938 3.062 11 H -0.278 1.278 12 H -0.281 1.281 13 H -0.238 1.238 14 C 0.510 3.490 15 O -0.552 6.552 16 C 0.481 3.519 17 O -0.434 6.434 18 N -0.631 5.631 19 C 0.341 3.659 20 N -0.504 5.504 21 C 0.123 3.877 22 C -0.112 4.112 23 Cl -0.047 7.047 24 C -0.034 4.034 25 C -0.144 4.144 26 C -0.111 4.111 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.265 0.735 35 H 0.436 0.564 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -16.420 -3.194 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.202 4.202 3 C 0.013 3.987 4 N -0.286 5.286 5 C 0.087 3.913 6 C -0.552 4.552 7 H 0.044 0.956 8 C -0.174 4.174 9 N -0.587 5.587 10 Si 0.762 3.238 11 H -0.204 1.204 12 H -0.206 1.206 13 H -0.161 1.161 14 C 0.292 3.708 15 O -0.433 6.433 16 C 0.261 3.739 17 O -0.300 6.300 18 N -0.282 5.282 19 C 0.110 3.890 20 N -0.218 5.218 21 C -0.036 4.036 22 C -0.143 4.143 23 Cl -0.018 7.018 24 C -0.060 4.060 25 C -0.150 4.150 26 C -0.168 4.168 27 H 0.123 0.877 28 H 0.140 0.860 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.278 0.722 36 H 0.182 0.818 37 H 0.204 0.796 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.073 -15.777 -2.726 18.916 hybrid contribution 0.559 0.170 0.595 0.834 sum 10.632 -15.607 -2.130 19.004 Atomic orbital electron populations 1.24106 0.95003 1.03372 0.97286 1.23128 0.96769 0.97545 1.02799 1.20821 0.91877 0.97076 0.88950 1.47922 1.08152 1.59855 1.12644 1.20099 0.95999 0.94702 0.80545 1.21230 1.37768 0.94559 1.01690 0.95623 1.25578 0.96239 0.95357 1.00188 1.70040 1.49295 1.12207 1.27158 0.85859 0.78974 0.79338 0.79637 1.20359 1.20649 1.16126 1.19849 0.83597 0.79074 0.88291 1.90641 1.76206 1.51330 1.25168 1.20581 0.83599 0.79911 0.89784 1.90938 1.73286 1.38646 1.27114 1.43247 1.11221 1.61512 1.12259 1.18693 0.88814 0.94826 0.86690 1.67737 1.37162 1.17871 0.99066 1.22776 0.88952 0.94896 0.96939 1.22007 0.93605 1.07555 0.91105 1.98368 1.66594 1.97257 1.39594 1.21568 1.01268 0.94789 0.88396 1.20621 0.91043 1.03412 0.99893 1.20870 1.03981 1.02512 0.89405 0.87722 0.85983 0.87246 0.89388 0.89016 0.93792 0.92142 0.92598 0.72185 0.81768 0.79599 0.88496 0.91296 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.77 0.97 -2.68 16 2 C -0.18 -5.10 9.84 25.64 0.25 -4.85 16 3 C 0.13 4.57 5.90 85.63 0.50 5.07 16 4 N -0.56 -23.23 2.46 -832.18 -2.05 -25.28 16 5 C 0.21 9.90 3.86 85.64 0.33 10.23 16 6 C -0.51 -29.78 8.86 25.60 0.23 -29.55 16 7 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 8 C 0.02 1.44 5.47 84.65 0.46 1.91 16 9 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 10 Si 0.94 45.44 27.47 68.60 1.88 47.33 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.24 -10.31 6.54 99.48 0.65 -9.65 16 14 C 0.51 20.93 7.67 87.24 0.67 21.60 16 15 O -0.55 -21.72 15.98 -3.29 -0.05 -21.77 16 16 C 0.48 19.97 7.73 87.24 0.67 20.65 16 17 O -0.43 -21.40 10.61 -3.29 -0.03 -21.43 16 18 N -0.63 -20.43 5.29 -309.78 -1.64 -22.07 16 19 C 0.34 10.66 7.41 132.94 0.98 11.65 16 20 N -0.50 -18.86 7.87 -192.99 -1.52 -20.38 16 21 C 0.12 3.73 10.98 84.69 0.93 4.66 16 22 C -0.11 -2.58 6.34 22.43 0.14 -2.44 16 23 Cl -0.05 -0.91 28.99 -2.72 -0.08 -0.99 16 24 C -0.03 -0.63 9.65 22.46 0.22 -0.41 16 25 C -0.14 -3.03 5.92 -19.64 -0.12 -3.15 16 26 C -0.11 -1.38 9.59 71.24 0.68 -0.70 16 27 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 28 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.11 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.09 2.99 7.76 -2.39 -0.02 2.97 16 31 H 0.09 3.07 7.23 -2.39 -0.02 3.05 16 32 H 0.04 1.98 7.08 -2.39 -0.02 1.96 16 33 H 0.06 3.03 4.84 -2.39 -0.01 3.01 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.44 11.20 6.16 -92.71 -0.57 10.63 16 36 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.92 6.56 -2.39 -0.02 0.91 16 40 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -77.19 359.21 4.21 -72.98 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.46 Total: 19.74 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 6.93 Total: 31.98 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -4.90 Total: -127.84 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.09 Total: -43.20 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -77.19 4.21 -72.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293068378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.942 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds