Wall clock time and date at job start Tue Mar 31 2020 19:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99743 * 2 1 4 4 N 1.46501 * 109.47224 * 124.99779 * 3 2 1 5 5 C 1.46498 * 120.00196 * 274.81607 * 4 3 2 6 6 C 1.50703 * 109.47024 * 263.67312 * 5 4 3 7 7 H 1.07995 * 119.99822 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00092 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99509 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47368 * 59.99954 * 10 8 6 12 12 H 1.48501 * 109.46841 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47237 * 299.99679 * 10 8 6 14 14 C 1.34780 * 119.99920 * 94.81299 * 4 3 2 15 15 O 1.21352 * 120.00163 * 354.61525 * 14 4 3 16 16 C 1.49352 * 119.99624 * 174.61796 * 14 4 3 17 17 O 1.21379 * 120.00255 * 0.03238 * 16 14 4 18 18 N 1.34782 * 119.99443 * 180.02562 * 16 14 4 19 19 C 1.39787 * 119.99471 * 185.10134 * 18 16 14 20 20 C 1.39260 * 120.50233 * 327.25305 * 19 18 16 21 21 C 1.38541 * 118.37197 * 180.25847 * 20 19 18 22 22 C 1.50703 * 120.36736 * 179.72074 * 21 20 19 23 23 C 1.38234 * 119.26978 * 359.44853 * 21 20 19 24 24 N 1.31893 * 120.94452 * 0.27104 * 23 21 20 25 25 C 1.31885 * 121.78184 * 0.02562 * 24 23 21 26 26 Cl 1.73607 * 119.68607 * 179.97438 * 25 24 23 27 27 H 1.07996 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99652 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47029 * 4.99782 * 3 2 1 31 31 H 1.09004 * 109.46802 * 244.99460 * 3 2 1 32 32 H 1.09007 * 109.47073 * 23.66818 * 5 4 3 33 33 H 1.08998 * 109.47305 * 143.66685 * 5 4 3 34 34 H 0.97001 * 119.99369 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00344 * 5.10287 * 18 16 14 36 36 H 1.08004 * 120.81330 * 0.02562 * 20 19 18 37 37 H 1.09005 * 109.46910 * 269.72841 * 22 21 20 38 38 H 1.09004 * 109.47190 * 29.72097 * 22 21 20 39 39 H 1.08995 * 109.47479 * 149.72653 * 22 21 20 40 40 H 1.07997 * 119.52402 * 180.29140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5294 1.7661 2.4514 6 6 2.8598 3.2235 2.6459 7 1 3.3655 3.7714 1.8646 8 6 2.5165 3.8573 3.8213 9 7 1.9003 3.1901 4.7724 10 14 2.9268 5.6637 4.0625 11 1 2.2546 6.4687 3.0113 12 1 2.4560 6.1037 5.4005 13 1 4.3964 5.8544 3.9681 14 6 4.2767 0.9573 0.9581 15 8 4.6380 0.5055 -0.1087 16 6 5.2537 1.0982 2.0789 17 8 4.8921 1.5495 3.1461 18 7 6.5368 0.7240 1.9053 19 6 7.4259 0.7552 2.9836 20 6 7.2949 1.7193 3.9800 21 6 8.2037 1.7129 5.0257 22 6 8.1076 2.7395 6.1248 23 6 9.1960 0.7509 5.0529 24 7 9.2907 -0.1530 4.0971 25 6 8.4507 -0.1798 3.0806 26 17 8.6261 -1.3938 1.8521 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6256 2.5214 33 1 3.0235 1.1753 3.2227 34 1 1.6585 3.6362 5.5991 35 1 6.8434 0.4330 1.0322 36 1 6.5066 2.4562 3.9365 37 1 8.7048 3.6121 5.8600 38 1 7.0670 3.0371 6.2540 39 1 8.4815 2.3120 7.0550 40 1 9.9037 0.7392 5.8686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293111006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:23 Heat of formation + Delta-G solvation = -0.868087 kcal Electronic energy + Delta-G solvation = -26978.744361 eV Core-core repulsion = 23013.984481 eV Total energy + Delta-G solvation = -3964.759880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00034 -39.84957 -38.11257 -36.73525 -36.05507 -34.87026 -33.53032 -33.32568 -32.15181 -30.39500 -27.63522 -27.26164 -26.55602 -24.54503 -23.38131 -22.68375 -21.44983 -20.04551 -19.32661 -17.73655 -17.26975 -16.94773 -16.66916 -16.44491 -15.81913 -15.37766 -15.00677 -14.75433 -14.48714 -14.27666 -14.01981 -13.71122 -13.31459 -13.17487 -12.94504 -12.78066 -12.69262 -12.34174 -12.00794 -11.73506 -11.56139 -11.55267 -11.34227 -11.22958 -10.98635 -10.94066 -10.80771 -10.56397 -10.10522 -9.84013 -9.79261 -9.29546 -9.21229 -8.76585 -8.38261 -8.25469 -7.97151 -6.10510 -4.13299 0.79059 1.15111 1.77469 1.99120 2.35323 2.80257 3.24504 3.29827 3.31764 3.52155 3.78117 3.97884 4.36588 4.48703 4.64691 4.79467 4.98752 5.01820 5.04030 5.23613 5.25687 5.42016 5.57108 5.60672 5.75795 5.85686 5.95318 6.03868 6.15883 6.18635 6.29700 6.52492 6.65820 6.82135 6.94731 7.17299 7.29571 7.38640 7.64563 7.76995 7.96699 8.09288 8.16992 8.51943 8.86358 9.49060 10.98188 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.005027 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.071733 B = 5568.317650 C = 8112.628783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.554 5.554 5 C 0.229 3.771 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.509 3.491 15 O -0.555 6.555 16 C 0.491 3.509 17 O -0.425 6.425 18 N -0.655 5.655 19 C 0.136 3.864 20 C -0.074 4.074 21 C -0.109 4.109 22 C -0.112 4.112 23 C 0.089 3.911 24 N -0.457 5.457 25 C 0.134 3.866 26 Cl -0.032 7.032 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.170 0.830 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 -4.162 -2.259 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.018 3.982 4 N -0.283 5.283 5 C 0.111 3.889 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.291 3.709 15 O -0.436 6.436 16 C 0.273 3.727 17 O -0.292 6.292 18 N -0.304 5.304 19 C 0.036 3.964 20 C -0.101 4.101 21 C -0.112 4.112 22 C -0.169 4.169 23 C -0.069 4.069 24 N -0.167 5.167 25 C -0.033 4.033 26 Cl -0.004 7.004 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.259 0.741 36 H 0.188 0.812 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.333 -4.758 -1.927 10.651 hybrid contribution -0.296 1.284 -0.307 1.353 sum 9.037 -3.474 -2.234 9.936 Atomic orbital electron populations 1.23808 0.95719 1.01786 1.00918 1.23290 0.96126 0.98970 0.99533 1.20623 0.92181 0.95449 0.89971 1.48269 1.07032 1.59616 1.13405 1.19953 0.96004 0.96307 0.76650 1.21149 1.38752 0.94191 1.01452 0.92810 1.24792 0.94950 0.97921 0.95538 1.69909 1.40023 1.36348 1.06392 0.86671 0.78815 0.85253 0.77313 1.20337 1.21184 1.20297 1.19617 0.83872 0.80133 0.87270 1.90673 1.78912 1.46579 1.27465 1.20519 0.82374 0.79840 0.90008 1.90976 1.76306 1.36019 1.25866 1.43239 1.08690 1.66572 1.11943 1.18278 0.91633 0.94783 0.91686 1.21961 0.99121 0.96883 0.92174 1.20975 0.94966 0.98143 0.97083 1.20770 1.04042 0.96723 0.95408 1.22465 0.97507 0.90710 0.96250 1.66923 1.24873 1.23931 1.00927 1.21379 0.96051 0.92374 0.93544 1.98394 1.97344 1.54204 1.50427 0.88293 0.88662 0.87585 0.89273 0.89514 0.94696 0.91816 0.92722 0.74081 0.81237 0.90563 0.90275 0.90890 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 29.01 0.42 -2.08 16 2 C -0.16 -2.47 9.84 -36.03 -0.35 -2.83 16 3 C 0.14 2.41 5.83 -5.19 -0.03 2.38 16 4 N -0.55 -11.30 2.46 -176.98 -0.44 -11.73 16 5 C 0.23 5.46 4.78 -5.19 -0.02 5.43 16 6 C -0.52 -13.30 7.78 -34.44 -0.27 -13.57 16 7 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 8 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 9 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 10 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.51 10.21 7.67 -11.63 -0.09 10.12 16 15 O -0.56 -11.10 16.04 5.50 0.09 -11.01 16 16 C 0.49 9.58 7.59 -11.63 -0.09 9.49 16 17 O -0.43 -9.41 9.45 5.47 0.05 -9.36 16 18 N -0.66 -10.82 5.07 -10.17 -0.05 -10.87 16 19 C 0.14 2.17 6.36 -83.54 -0.53 1.64 16 20 C -0.07 -1.17 8.51 -39.09 -0.33 -1.50 16 21 C -0.11 -1.42 5.89 -104.51 -0.62 -2.04 16 22 C -0.11 -1.17 10.04 36.01 0.36 -0.81 16 23 C 0.09 1.10 10.85 -17.53 -0.19 0.91 16 24 N -0.46 -6.63 10.33 -10.19 -0.11 -6.73 16 25 C 0.13 2.02 7.30 -17.22 -0.13 1.89 16 26 Cl -0.03 -0.44 28.09 -51.86 -1.46 -1.89 16 27 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 28 H 0.10 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.09 1.50 7.76 -51.93 -0.40 1.09 16 31 H 0.09 1.44 7.36 -51.93 -0.38 1.05 16 32 H 0.04 0.87 8.02 -51.92 -0.42 0.45 16 33 H 0.06 1.66 5.85 -51.93 -0.30 1.35 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.42 6.32 7.51 -40.82 -0.31 6.01 16 36 H 0.17 3.07 6.13 -52.48 -0.32 2.75 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -29.25 362.90 -7.32 -36.57 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.62 Total: 7.14 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.97 Total: 10.81 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.14 Total: -53.22 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.14 Total: -20.36 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.46 Total: -1.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.25 -7.32 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293111006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.700 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds