Wall clock time and date at job start Tue Mar 31 2020 19:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99743 * 2 1 4 4 N 1.46501 * 109.47224 * 124.99779 * 3 2 1 5 5 C 1.46498 * 120.00196 * 274.81607 * 4 3 2 6 6 C 1.50703 * 109.47024 * 263.67312 * 5 4 3 7 7 H 1.07995 * 119.99822 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00092 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99509 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47368 * 59.99954 * 10 8 6 12 12 H 1.48501 * 109.46841 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47237 * 299.99679 * 10 8 6 14 14 C 1.34780 * 119.99920 * 94.81299 * 4 3 2 15 15 O 1.21352 * 120.00163 * 354.61525 * 14 4 3 16 16 C 1.49352 * 119.99624 * 174.61796 * 14 4 3 17 17 O 1.21379 * 120.00255 * 0.03238 * 16 14 4 18 18 N 1.34782 * 119.99443 * 180.02562 * 16 14 4 19 19 C 1.39787 * 119.99471 * 185.10134 * 18 16 14 20 20 C 1.39260 * 120.50233 * 327.25305 * 19 18 16 21 21 C 1.38541 * 118.37197 * 180.25847 * 20 19 18 22 22 C 1.50703 * 120.36736 * 179.72074 * 21 20 19 23 23 C 1.38234 * 119.26978 * 359.44853 * 21 20 19 24 24 N 1.31893 * 120.94452 * 0.27104 * 23 21 20 25 25 C 1.31885 * 121.78184 * 0.02562 * 24 23 21 26 26 Cl 1.73607 * 119.68607 * 179.97438 * 25 24 23 27 27 H 1.07996 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99652 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47029 * 4.99782 * 3 2 1 31 31 H 1.09004 * 109.46802 * 244.99460 * 3 2 1 32 32 H 1.09007 * 109.47073 * 23.66818 * 5 4 3 33 33 H 1.08998 * 109.47305 * 143.66685 * 5 4 3 34 34 H 0.97001 * 119.99369 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00344 * 5.10287 * 18 16 14 36 36 H 1.08004 * 120.81330 * 0.02562 * 20 19 18 37 37 H 1.09005 * 109.46910 * 269.72841 * 22 21 20 38 38 H 1.09004 * 109.47190 * 29.72097 * 22 21 20 39 39 H 1.08995 * 109.47479 * 149.72653 * 22 21 20 40 40 H 1.07997 * 119.52402 * 180.29140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5294 1.7661 2.4514 6 6 2.8598 3.2235 2.6459 7 1 3.3655 3.7714 1.8646 8 6 2.5165 3.8573 3.8213 9 7 1.9003 3.1901 4.7724 10 14 2.9268 5.6637 4.0625 11 1 2.2546 6.4687 3.0113 12 1 2.4560 6.1037 5.4005 13 1 4.3964 5.8544 3.9681 14 6 4.2767 0.9573 0.9581 15 8 4.6380 0.5055 -0.1087 16 6 5.2537 1.0982 2.0789 17 8 4.8921 1.5495 3.1461 18 7 6.5368 0.7240 1.9053 19 6 7.4259 0.7552 2.9836 20 6 7.2949 1.7193 3.9800 21 6 8.2037 1.7129 5.0257 22 6 8.1076 2.7395 6.1248 23 6 9.1960 0.7509 5.0529 24 7 9.2907 -0.1530 4.0971 25 6 8.4507 -0.1798 3.0806 26 17 8.6261 -1.3938 1.8521 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6256 2.5214 33 1 3.0235 1.1753 3.2227 34 1 1.6585 3.6362 5.5991 35 1 6.8434 0.4330 1.0322 36 1 6.5066 2.4562 3.9365 37 1 8.7048 3.6121 5.8600 38 1 7.0670 3.0371 6.2540 39 1 8.4815 2.3120 7.0550 40 1 9.9037 0.7392 5.8686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293111006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:22 Heat of formation + Delta-G solvation = -18.291163 kcal Electronic energy + Delta-G solvation = -26979.499883 eV Core-core repulsion = 23013.984481 eV Total energy + Delta-G solvation = -3965.515401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36300 -41.21260 -39.60720 -37.87022 -37.60564 -36.23623 -35.02123 -34.57211 -33.83253 -31.63531 -29.44848 -28.24877 -28.04877 -25.93678 -25.00688 -24.11664 -22.69767 -21.40152 -20.65885 -19.21270 -18.57594 -18.42858 -18.37253 -17.73517 -17.33083 -16.95611 -16.50688 -16.19753 -16.05383 -15.61956 -15.13859 -15.07054 -14.71292 -14.37271 -14.22730 -14.10343 -14.05407 -13.78393 -13.51072 -13.04318 -12.95177 -12.85305 -12.71923 -12.60825 -12.44140 -12.38741 -12.30143 -12.14732 -11.92044 -11.68491 -11.02973 -10.62841 -10.49848 -10.38278 -10.07033 -9.70246 -9.42700 -8.12543 -6.21339 -0.37332 -0.03526 0.47176 0.65091 1.05327 1.41838 1.42030 1.49748 1.50735 2.10780 2.39917 2.51089 2.56143 3.21287 3.25288 3.40504 3.58569 3.85085 3.91663 4.01903 4.03136 4.14356 4.44799 4.57693 4.72151 4.75798 4.80437 4.81153 4.94615 5.01967 5.12089 5.22159 5.34302 5.42929 5.52974 5.66792 5.74974 5.80857 5.90049 6.10827 6.24935 6.54054 6.63024 6.80625 6.97387 7.44503 8.95649 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.005027 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.071733 B = 5568.317650 C = 8112.628783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.558 5.558 5 C 0.250 3.750 6 C -0.518 4.518 7 H 0.046 0.954 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.555 6.555 16 C 0.492 3.508 17 O -0.458 6.458 18 N -0.642 5.642 19 C 0.115 3.885 20 C -0.092 4.092 21 C -0.104 4.104 22 C -0.110 4.110 23 C 0.103 3.897 24 N -0.466 5.466 25 C 0.129 3.871 26 Cl -0.023 7.023 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.427 0.573 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -3.968 -1.864 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.204 4.204 3 C 0.017 3.983 4 N -0.288 5.288 5 C 0.130 3.870 6 C -0.557 4.557 7 H 0.065 0.935 8 C -0.174 4.174 9 N -0.559 5.559 10 Si 0.774 3.226 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.289 3.711 15 O -0.436 6.436 16 C 0.274 3.726 17 O -0.327 6.327 18 N -0.291 5.291 19 C 0.017 3.983 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.167 4.167 23 C -0.055 4.055 24 N -0.176 5.176 25 C -0.037 4.037 26 Cl 0.005 6.995 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 10.517 -4.582 -1.579 11.580 hybrid contribution -0.604 1.173 -0.430 1.388 sum 9.913 -3.409 -2.009 10.674 Atomic orbital electron populations 1.24067 0.95031 1.03238 0.97543 1.23143 0.96792 0.97841 1.02589 1.20783 0.91934 0.96739 0.88893 1.48230 1.07752 1.59659 1.13137 1.19449 0.94582 0.95142 0.77817 1.21301 1.38083 0.95070 1.01235 0.93526 1.25483 0.94891 1.01681 0.95314 1.70016 1.41243 1.37878 1.06813 0.85769 0.78599 0.80802 0.77430 1.19591 1.20733 1.20048 1.19754 0.83928 0.79989 0.87470 1.90658 1.78886 1.46608 1.27458 1.20487 0.83153 0.79596 0.89386 1.90972 1.77011 1.37926 1.26825 1.43045 1.07854 1.65637 1.12591 1.18369 0.92262 0.95867 0.91832 1.21882 0.99588 0.96890 0.93605 1.21286 0.94069 0.98699 0.96578 1.20849 1.03298 0.96815 0.95760 1.23168 0.97213 0.88951 0.96212 1.67056 1.24738 1.24656 1.01191 1.21410 0.95823 0.92391 0.94088 1.98392 1.97283 1.53683 1.50094 0.87617 0.86335 0.87886 0.89140 0.89058 0.96098 0.94160 0.92759 0.73374 0.83940 0.88774 0.92320 0.87854 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.18 -5.62 9.84 25.64 0.25 -5.37 16 3 C 0.14 4.77 5.83 85.63 0.50 5.27 16 4 N -0.56 -23.35 2.46 -832.19 -2.05 -25.39 16 5 C 0.25 12.30 4.78 85.63 0.41 12.71 16 6 C -0.52 -27.29 7.78 25.60 0.20 -27.09 16 7 H 0.05 2.47 7.81 -2.91 -0.02 2.45 16 8 C 0.03 1.39 5.46 84.66 0.46 1.86 16 9 N -0.92 -51.98 13.29 21.45 0.28 -51.69 16 10 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.51 20.79 7.67 87.24 0.67 21.46 16 15 O -0.55 -22.32 16.04 -3.25 -0.05 -22.38 16 16 C 0.49 19.91 7.59 87.24 0.66 20.57 16 17 O -0.46 -21.25 9.45 -3.34 -0.03 -21.29 16 18 N -0.64 -21.71 5.07 -304.43 -1.54 -23.25 16 19 C 0.12 3.73 6.36 38.32 0.24 3.97 16 20 C -0.09 -2.97 8.51 22.59 0.19 -2.78 16 21 C -0.10 -2.56 5.89 -19.79 -0.12 -2.67 16 22 C -0.11 -2.06 10.04 71.24 0.71 -1.35 16 23 C 0.10 2.24 10.85 84.68 0.92 3.16 16 24 N -0.47 -12.63 10.33 -186.16 -1.92 -14.56 16 25 C 0.13 3.80 7.30 84.88 0.62 4.42 16 26 Cl -0.02 -0.61 28.09 -2.72 -0.08 -0.68 16 27 H 0.11 2.56 7.84 -2.91 -0.02 2.53 16 28 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 29 H 0.10 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.09 3.05 7.76 -2.39 -0.02 3.03 16 31 H 0.09 3.03 7.36 -2.38 -0.02 3.01 16 32 H 0.02 1.08 8.02 -2.38 -0.02 1.06 16 33 H 0.04 2.20 5.85 -2.39 -0.01 2.19 16 34 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.43 13.01 7.51 -92.71 -0.70 12.31 16 36 H 0.14 5.44 6.13 -2.91 -0.02 5.43 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.37 8.09 -2.38 -0.02 1.35 16 39 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 40 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -63.81 362.90 3.73 -60.08 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.39 Total: 23.80 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 6.70 Total: 31.03 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -5.23 Total: -114.89 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.08 Total: -43.66 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -63.81 3.73 -60.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293111006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.785 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds