Wall clock time and date at job start Tue Mar 31 2020 19:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 120.00106 * 2 1 4 4 N 1.46499 * 109.46848 * 125.00045 * 3 2 1 5 5 C 1.46505 * 119.99785 * 274.82272 * 4 3 2 6 6 C 1.50705 * 109.47197 * 263.67522 * 5 4 3 7 7 H 1.07998 * 119.99778 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99664 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99514 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00379 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47239 * 89.99976 * 10 8 6 12 12 H 1.48500 * 109.47207 * 210.00353 * 10 8 6 13 13 H 1.48504 * 109.47304 * 330.00226 * 10 8 6 14 14 C 1.34774 * 120.00165 * 94.83213 * 4 3 2 15 15 O 1.21358 * 119.99763 * 354.61170 * 14 4 3 16 16 C 1.49351 * 120.00147 * 174.61697 * 14 4 3 17 17 O 1.21380 * 119.99913 * 0.16911 * 16 14 4 18 18 N 1.34778 * 120.00119 * 180.16747 * 16 14 4 19 19 C 1.39789 * 120.00110 * 184.93827 * 18 16 14 20 20 C 1.38896 * 120.48133 * 326.64192 * 19 18 16 21 21 N 1.31806 * 120.67434 * 180.02562 * 20 19 18 22 22 C 1.31976 * 121.78542 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 119.55552 * 180.02562 * 22 21 20 24 24 C 1.38405 * 120.89605 * 359.74530 * 22 21 20 25 25 C 1.38487 * 119.22764 * 0.50348 * 24 22 21 26 26 C 1.50699 * 120.81108 * 179.77634 * 25 24 22 27 27 H 1.08004 * 119.99534 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00279 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46598 * 5.00180 * 3 2 1 31 31 H 1.09002 * 109.47025 * 245.00302 * 3 2 1 32 32 H 1.08995 * 109.46849 * 23.67359 * 5 4 3 33 33 H 1.09003 * 109.46783 * 143.67816 * 5 4 3 34 34 H 0.97001 * 119.99787 * 180.02562 * 9 8 6 35 35 H 0.97006 * 119.99837 * 4.94327 * 18 16 14 36 36 H 1.08004 * 119.66183 * 0.04124 * 20 19 18 37 37 H 1.07995 * 120.38500 * 180.26665 * 24 22 21 38 38 H 1.08998 * 109.47665 * 269.72417 * 26 25 24 39 39 H 1.08996 * 109.47287 * 149.72160 * 26 25 24 40 40 H 1.09007 * 109.46997 * 29.72704 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5294 1.7658 2.4514 6 6 2.8598 3.2232 2.6462 7 1 3.3655 3.7713 1.8650 8 6 2.5173 3.8565 3.8220 9 7 2.8052 5.1285 3.9917 10 14 1.6433 2.9083 5.1734 11 1 2.6488 2.3024 6.0828 12 1 0.7729 3.8329 5.9434 13 1 0.8133 1.8358 4.5683 14 6 4.2768 0.9575 0.9580 15 8 4.6382 0.5060 -0.1090 16 6 5.2539 1.0981 2.0788 17 8 4.8917 1.5468 3.1469 18 7 6.5377 0.7269 1.9042 19 6 7.4278 0.7611 2.9815 20 6 7.3033 1.7311 3.9678 21 7 8.1408 1.7672 4.9850 22 6 9.1220 0.8933 5.1090 23 17 10.1912 0.9942 6.4728 24 6 9.3065 -0.1061 4.1695 25 6 8.4524 -0.1776 3.0817 26 6 8.6238 -1.2480 2.0348 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6252 2.5213 33 1 3.0237 1.1750 3.2227 34 1 2.5646 5.5740 4.8191 35 1 6.8440 0.4360 1.0310 36 1 6.5120 2.4631 3.9007 37 1 10.1095 -0.8195 4.2814 38 1 9.2859 -0.8849 1.2487 39 1 7.6528 -1.4958 1.6062 40 1 9.0567 -2.1377 2.4923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293163252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:57 Heat of formation + Delta-G solvation = 5.245265 kcal Electronic energy + Delta-G solvation = -26844.823372 eV Core-core repulsion = 22880.328586 eV Total energy + Delta-G solvation = -3964.494785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14298 -39.92127 -38.19820 -36.71127 -36.17445 -35.12891 -33.64633 -33.22729 -32.18194 -30.05876 -28.25618 -28.11269 -26.65963 -24.48236 -23.08936 -22.41673 -21.68180 -20.19787 -19.42457 -17.77085 -17.29425 -17.06662 -16.78579 -16.47321 -16.05323 -15.59115 -15.08737 -14.84601 -14.45712 -14.26685 -14.08483 -13.77823 -13.40433 -13.36784 -13.23267 -13.02841 -12.87084 -12.39788 -12.26400 -11.95094 -11.75949 -11.67734 -11.39229 -11.33299 -11.05812 -10.76564 -10.66204 -10.50982 -10.23533 -9.69870 -9.60478 -9.51503 -9.36857 -8.87485 -8.56626 -8.26486 -8.05075 -6.10598 -4.08941 0.79257 1.04127 1.79288 1.87717 2.24076 2.72311 3.29765 3.34303 3.38866 3.47751 3.71155 3.87976 4.39524 4.40059 4.52108 4.64770 4.81031 4.84270 5.12100 5.12652 5.23580 5.28274 5.30946 5.52192 5.58303 5.66228 5.73129 5.91749 5.94969 6.08814 6.12776 6.29714 6.64974 6.70619 6.78706 6.81733 7.01629 7.21022 7.50286 7.72356 7.76896 8.02205 8.33927 8.46919 8.88396 9.49420 11.02338 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.004049 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.953530 B = 6913.300302 C = 8843.647807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.519 4.519 7 H 0.073 0.927 8 C 0.083 3.917 9 N -0.893 5.893 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.552 6.552 16 C 0.493 3.507 17 O -0.432 6.432 18 N -0.652 5.652 19 C 0.108 3.892 20 C 0.125 3.875 21 N -0.459 5.459 22 C 0.154 3.846 23 Cl -0.040 7.040 24 C -0.140 4.140 25 C -0.063 4.063 26 C -0.116 4.116 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.420 0.580 36 H 0.192 0.808 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -13.393 -4.450 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.017 3.983 4 N -0.278 5.278 5 C 0.079 3.921 6 C -0.558 4.558 7 H 0.091 0.909 8 C -0.120 4.120 9 N -0.532 5.532 10 Si 0.698 3.302 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.433 6.433 16 C 0.275 3.725 17 O -0.299 6.299 18 N -0.301 5.301 19 C 0.010 3.990 20 C -0.035 4.035 21 N -0.170 5.170 22 C -0.010 4.010 23 Cl -0.012 7.012 24 C -0.161 4.161 25 C -0.073 4.073 26 C -0.173 4.173 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.208 0.792 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.747 -12.458 -3.336 15.584 hybrid contribution -0.116 -1.016 0.069 1.025 sum 8.632 -13.474 -3.267 16.332 Atomic orbital electron populations 1.23844 0.95743 1.01902 1.00752 1.23309 0.96137 0.98974 0.99684 1.20661 0.92215 0.95489 0.89888 1.47916 1.07263 1.59855 1.12731 1.20336 0.95560 0.97649 0.78540 1.21046 1.39535 0.92135 1.03042 0.90883 1.24701 0.95138 0.94561 0.97601 1.69874 1.46944 1.09915 1.26420 0.86935 0.80103 0.80142 0.83009 1.19693 1.21243 1.19218 1.19585 0.83675 0.79900 0.87315 1.90676 1.78730 1.46530 1.27382 1.20470 0.82580 0.79644 0.89851 1.90939 1.76543 1.36287 1.26151 1.43134 1.08466 1.66572 1.11956 1.18740 0.92425 0.95943 0.91931 1.23369 0.96339 0.95964 0.87778 1.67160 1.02703 1.24331 1.22775 1.21614 0.93613 0.94698 0.91099 1.98385 1.61564 1.97862 1.43362 1.21464 1.01357 0.99613 0.93682 1.20078 0.95176 0.95387 0.96669 1.20783 1.03477 0.96214 0.96804 0.88183 0.88598 0.87524 0.89002 0.89164 0.94959 0.92703 0.92511 0.74214 0.79183 0.83637 0.90043 0.90613 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 29.01 0.42 -1.87 16 2 C -0.16 -2.29 9.84 -36.02 -0.35 -2.65 16 3 C 0.14 2.27 5.83 -5.19 -0.03 2.24 16 4 N -0.55 -10.64 2.46 -176.97 -0.44 -11.08 16 5 C 0.20 4.45 3.85 -5.19 -0.02 4.43 16 6 C -0.52 -13.74 8.34 -34.44 -0.29 -14.03 16 7 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 8 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 9 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 10 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 14 C 0.51 9.64 7.67 -11.63 -0.09 9.55 16 15 O -0.55 -10.18 16.04 5.49 0.09 -10.10 16 16 C 0.49 9.04 7.58 -11.63 -0.09 8.95 16 17 O -0.43 -9.33 9.46 5.47 0.05 -9.28 16 18 N -0.65 -9.51 4.82 -10.19 -0.05 -9.55 16 19 C 0.11 1.58 6.34 -83.58 -0.53 1.05 16 20 C 0.13 2.19 9.89 -17.32 -0.17 2.02 16 21 N -0.46 -7.94 10.33 -10.19 -0.11 -8.05 16 22 C 0.15 2.20 7.27 -17.43 -0.13 2.08 16 23 Cl -0.04 -0.50 29.10 -51.86 -1.51 -2.01 16 24 C -0.14 -1.59 9.57 -39.43 -0.38 -1.97 16 25 C -0.06 -0.72 5.93 -104.13 -0.62 -1.34 16 26 C -0.12 -0.91 9.56 36.00 0.34 -0.57 16 27 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.09 1.48 7.76 -51.93 -0.40 1.07 16 31 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.03 0.71 7.08 -51.93 -0.37 0.35 16 33 H 0.06 1.27 5.27 -51.93 -0.27 1.00 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.42 5.10 7.38 -40.82 -0.30 4.79 16 36 H 0.19 3.84 6.09 -52.48 -0.32 3.52 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.62 7.27 -51.93 -0.38 0.24 16 40 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -31.21 358.71 -7.02 -38.22 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.54 Total: 5.71 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -2.03 Total: 10.10 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.18 Total: -54.47 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.14 Total: -19.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.21 -7.02 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293163252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.469 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds