Wall clock time and date at job start Tue Mar 31 2020 19:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 120.00106 * 2 1 4 4 N 1.46499 * 109.46848 * 125.00045 * 3 2 1 5 5 C 1.46505 * 119.99785 * 274.82272 * 4 3 2 6 6 C 1.50705 * 109.47197 * 263.67522 * 5 4 3 7 7 H 1.07998 * 119.99778 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99664 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99514 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00379 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47239 * 89.99976 * 10 8 6 12 12 H 1.48500 * 109.47207 * 210.00353 * 10 8 6 13 13 H 1.48504 * 109.47304 * 330.00226 * 10 8 6 14 14 C 1.34774 * 120.00165 * 94.83213 * 4 3 2 15 15 O 1.21358 * 119.99763 * 354.61170 * 14 4 3 16 16 C 1.49351 * 120.00147 * 174.61697 * 14 4 3 17 17 O 1.21380 * 119.99913 * 0.16911 * 16 14 4 18 18 N 1.34778 * 120.00119 * 180.16747 * 16 14 4 19 19 C 1.39789 * 120.00110 * 184.93827 * 18 16 14 20 20 C 1.38896 * 120.48133 * 326.64192 * 19 18 16 21 21 N 1.31806 * 120.67434 * 180.02562 * 20 19 18 22 22 C 1.31976 * 121.78542 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 119.55552 * 180.02562 * 22 21 20 24 24 C 1.38405 * 120.89605 * 359.74530 * 22 21 20 25 25 C 1.38487 * 119.22764 * 0.50348 * 24 22 21 26 26 C 1.50699 * 120.81108 * 179.77634 * 25 24 22 27 27 H 1.08004 * 119.99534 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00059 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00279 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46598 * 5.00180 * 3 2 1 31 31 H 1.09002 * 109.47025 * 245.00302 * 3 2 1 32 32 H 1.08995 * 109.46849 * 23.67359 * 5 4 3 33 33 H 1.09003 * 109.46783 * 143.67816 * 5 4 3 34 34 H 0.97001 * 119.99787 * 180.02562 * 9 8 6 35 35 H 0.97006 * 119.99837 * 4.94327 * 18 16 14 36 36 H 1.08004 * 119.66183 * 0.04124 * 20 19 18 37 37 H 1.07995 * 120.38500 * 180.26665 * 24 22 21 38 38 H 1.08998 * 109.47665 * 269.72417 * 26 25 24 39 39 H 1.08996 * 109.47287 * 149.72160 * 26 25 24 40 40 H 1.09007 * 109.46997 * 29.72704 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5294 1.7658 2.4514 6 6 2.8598 3.2232 2.6462 7 1 3.3655 3.7713 1.8650 8 6 2.5173 3.8565 3.8220 9 7 2.8052 5.1285 3.9917 10 14 1.6433 2.9083 5.1734 11 1 2.6488 2.3024 6.0828 12 1 0.7729 3.8329 5.9434 13 1 0.8133 1.8358 4.5683 14 6 4.2768 0.9575 0.9580 15 8 4.6382 0.5060 -0.1090 16 6 5.2539 1.0981 2.0788 17 8 4.8917 1.5468 3.1469 18 7 6.5377 0.7269 1.9042 19 6 7.4278 0.7611 2.9815 20 6 7.3033 1.7311 3.9678 21 7 8.1408 1.7672 4.9850 22 6 9.1220 0.8933 5.1090 23 17 10.1912 0.9942 6.4728 24 6 9.3065 -0.1061 4.1695 25 6 8.4524 -0.1776 3.0817 26 6 8.6238 -1.2480 2.0348 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6252 2.5213 33 1 3.0237 1.1750 3.2227 34 1 2.5646 5.5740 4.8191 35 1 6.8440 0.4360 1.0310 36 1 6.5120 2.4631 3.9007 37 1 10.1095 -0.8195 4.2814 38 1 9.2859 -0.8849 1.2487 39 1 7.6528 -1.4958 1.6062 40 1 9.0567 -2.1377 2.4923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293163252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:56 Heat of formation + Delta-G solvation = -15.533547 kcal Electronic energy + Delta-G solvation = -26845.724408 eV Core-core repulsion = 22880.328586 eV Total energy + Delta-G solvation = -3965.395822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44078 -41.24362 -39.60642 -37.86995 -37.55426 -36.36854 -35.02404 -34.53861 -33.90067 -31.22666 -30.07568 -29.01997 -27.99164 -25.82477 -24.66040 -23.77839 -22.90991 -21.45674 -20.64875 -19.17206 -19.06083 -18.64366 -17.89832 -17.75474 -17.47652 -17.05889 -16.43377 -16.17559 -15.96200 -15.64321 -15.34526 -15.17349 -14.82051 -14.42916 -14.36309 -14.13554 -14.04779 -13.93188 -13.76045 -13.17786 -12.91898 -12.87766 -12.81766 -12.66852 -12.36360 -12.31002 -12.22546 -11.97886 -11.83798 -11.67303 -10.84105 -10.76032 -10.56326 -10.51318 -10.20951 -9.71114 -9.41131 -8.25792 -6.26665 -0.37703 -0.01366 0.44353 0.71870 1.05892 1.34913 1.40663 1.44593 1.52723 2.08892 2.36388 2.48692 2.49920 3.12542 3.22885 3.39538 3.51926 3.76050 3.82352 4.02464 4.13858 4.25687 4.44749 4.48231 4.65089 4.66765 4.76339 4.77026 4.80221 4.95059 5.03795 5.09061 5.18599 5.31961 5.47669 5.50604 5.68471 5.82545 5.91568 6.07106 6.33397 6.55252 6.68978 6.70251 6.93551 7.35024 8.90837 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.004049 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.953530 B = 6913.300302 C = 8843.647807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.136 3.864 4 N -0.556 5.556 5 C 0.213 3.787 6 C -0.505 4.505 7 H 0.031 0.969 8 C 0.026 3.974 9 N -0.945 5.945 10 Si 0.930 3.070 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.236 1.236 14 C 0.512 3.488 15 O -0.547 6.547 16 C 0.491 3.509 17 O -0.473 6.473 18 N -0.631 5.631 19 C 0.095 3.905 20 C 0.099 3.901 21 N -0.497 5.497 22 C 0.143 3.857 23 Cl -0.028 7.028 24 C -0.124 4.124 25 C -0.041 4.041 26 C -0.116 4.116 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.433 0.567 36 H 0.150 0.850 37 H 0.190 0.810 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -17.104 -5.195 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.092 3.908 6 C -0.544 4.544 7 H 0.049 0.951 8 C -0.172 4.172 9 N -0.586 5.586 10 Si 0.755 3.245 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.159 1.159 14 C 0.294 3.706 15 O -0.428 6.428 16 C 0.274 3.726 17 O -0.343 6.343 18 N -0.281 5.281 19 C -0.003 4.003 20 C -0.060 4.060 21 N -0.209 5.209 22 C -0.022 4.022 23 Cl 0.000 7.000 24 C -0.145 4.145 25 C -0.052 4.052 26 C -0.172 4.172 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.274 0.726 36 H 0.167 0.833 37 H 0.207 0.793 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.307 -16.208 -4.149 19.145 hybrid contribution -0.121 0.118 0.223 0.280 sum 9.185 -16.090 -3.927 18.938 Atomic orbital electron populations 1.24102 0.95088 1.03308 0.97487 1.23131 0.96681 0.97688 1.02604 1.20820 0.91927 0.96997 0.88744 1.47918 1.08084 1.60025 1.12540 1.19972 0.95953 0.94648 0.80225 1.21185 1.37586 0.94093 1.01503 0.95107 1.25505 0.96326 0.95266 1.00138 1.70025 1.49418 1.11908 1.27213 0.85976 0.79065 0.79550 0.79916 1.20772 1.20963 1.15899 1.19683 0.83655 0.79768 0.87486 1.90664 1.78591 1.46355 1.27143 1.20539 0.83669 0.79265 0.89172 1.90935 1.77483 1.38440 1.27482 1.42893 1.07249 1.65272 1.12718 1.18749 0.93554 0.96593 0.91391 1.22788 0.96568 0.96936 0.89667 1.66988 1.04092 1.26318 1.23471 1.22017 0.93135 0.94891 0.92137 1.98385 1.60789 1.97847 1.42933 1.21921 1.01630 0.98844 0.92068 1.20523 0.92797 0.94660 0.97182 1.20967 1.04247 0.95756 0.96254 0.87741 0.86146 0.87280 0.89293 0.89043 0.93707 0.92982 0.92721 0.72620 0.83275 0.79331 0.87647 0.90768 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 14.32 67.78 0.97 -2.56 16 2 C -0.18 -4.81 9.84 25.65 0.25 -4.56 16 3 C 0.14 4.36 5.83 85.64 0.50 4.86 16 4 N -0.56 -21.66 2.46 -832.17 -2.05 -23.71 16 5 C 0.21 9.59 3.85 85.63 0.33 9.92 16 6 C -0.51 -27.80 8.34 25.60 0.21 -27.59 16 7 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 8 C 0.03 1.48 5.47 84.65 0.46 1.94 16 9 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 10 Si 0.93 44.20 27.47 68.60 1.88 46.09 16 11 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 14 C 0.51 19.30 7.67 87.24 0.67 19.97 16 15 O -0.55 -19.71 16.04 -3.27 -0.05 -19.77 16 16 C 0.49 18.52 7.58 87.24 0.66 19.18 16 17 O -0.47 -21.50 9.46 -3.34 -0.03 -21.53 16 18 N -0.63 -18.32 4.82 -304.51 -1.47 -19.79 16 19 C 0.09 2.75 6.34 38.29 0.24 3.00 16 20 C 0.10 3.68 9.89 84.85 0.84 4.52 16 21 N -0.50 -17.83 10.33 -186.15 -1.92 -19.76 16 22 C 0.14 3.94 7.27 84.71 0.62 4.56 16 23 Cl -0.03 -0.67 29.10 -2.72 -0.08 -0.75 16 24 C -0.12 -2.44 9.57 22.37 0.21 -2.23 16 25 C -0.04 -0.84 5.93 -19.55 -0.12 -0.95 16 26 C -0.12 -1.30 9.56 71.24 0.68 -0.62 16 27 H 0.10 2.19 7.84 -2.91 -0.02 2.17 16 28 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.09 2.84 7.76 -2.39 -0.02 2.82 16 31 H 0.09 2.85 7.36 -2.39 -0.02 2.83 16 32 H 0.05 1.92 7.08 -2.39 -0.02 1.90 16 33 H 0.05 2.43 5.27 -2.39 -0.01 2.42 16 34 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.43 9.94 7.38 -92.70 -0.68 9.26 16 36 H 0.15 6.71 6.09 -2.91 -0.02 6.70 16 37 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.92 7.27 -2.39 -0.02 0.91 16 40 H 0.11 0.70 8.10 -2.38 -0.02 0.68 16 Total: -1.00 -72.72 358.71 3.47 -69.25 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.35 Total: 19.21 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 6.54 Total: 29.43 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.14 Total: -121.93 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.08 Total: -41.30 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -72.72 3.47 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293163252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.717 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds