Wall clock time and date at job start Tue Mar 31 2020 19:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99674 * 2 1 4 4 N 1.46498 * 109.46898 * 125.00169 * 3 2 1 5 5 C 1.46506 * 120.00113 * 274.81497 * 4 3 2 6 6 C 1.50695 * 109.47195 * 263.67525 * 5 4 3 7 7 H 1.07997 * 120.00108 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99728 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99808 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47268 * 89.99938 * 10 8 6 12 12 H 1.48498 * 109.46998 * 210.00085 * 10 8 6 13 13 H 1.48506 * 109.46989 * 329.99618 * 10 8 6 14 14 C 1.34775 * 120.00372 * 94.81743 * 4 3 2 15 15 O 1.21362 * 119.99859 * 354.61906 * 14 4 3 16 16 C 1.49344 * 120.00551 * 174.61446 * 14 4 3 17 17 O 1.21382 * 119.99769 * 0.06249 * 16 14 4 18 18 N 1.34775 * 120.00319 * 180.02562 * 16 14 4 19 19 C 1.39795 * 120.00115 * 185.07685 * 18 16 14 20 20 C 1.39366 * 120.47773 * 327.11532 * 19 18 16 21 21 C 1.38438 * 118.36833 * 180.29704 * 20 19 18 22 22 C 1.38435 * 119.23537 * 359.93646 * 21 20 19 23 23 Cl 1.73602 * 119.55419 * 180.02562 * 22 21 20 24 24 N 1.31954 * 120.89463 * 0.06477 * 22 21 20 25 25 C 1.31834 * 121.78218 * 359.97438 * 24 22 21 26 26 C 1.50701 * 119.66186 * 179.97438 * 25 24 22 27 27 H 1.08001 * 119.99508 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.00245 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00245 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47657 * 5.00404 * 3 2 1 31 31 H 1.09003 * 109.47479 * 244.99874 * 3 2 1 32 32 H 1.09000 * 109.46488 * 23.67989 * 5 4 3 33 33 H 1.09000 * 109.46928 * 143.67540 * 5 4 3 34 34 H 0.96999 * 120.00547 * 180.02562 * 9 8 6 35 35 H 0.97007 * 120.00239 * 5.08093 * 18 16 14 36 36 H 1.07998 * 120.81398 * 0.25337 * 20 19 18 37 37 H 1.08002 * 120.38381 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47916 * 269.98263 * 26 25 24 39 39 H 1.09007 * 109.47002 * 29.98737 * 26 25 24 40 40 H 1.09001 * 109.47286 * 149.97827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5294 1.7659 2.4514 6 6 2.8598 3.2233 2.6460 7 1 3.3647 3.7715 1.8645 8 6 2.5165 3.8569 3.8214 9 7 1.9003 3.1897 4.7726 10 14 2.9254 5.6637 4.0624 11 1 1.7967 6.4961 3.5743 12 1 3.1506 5.9320 5.5055 13 1 4.1543 5.9991 3.2990 14 6 4.2767 0.9573 0.9580 15 8 4.6381 0.5057 -0.1089 16 6 5.2538 1.0981 2.0787 17 8 4.8921 1.5488 3.1461 18 7 6.5369 0.7240 1.9051 19 6 7.4262 0.7557 2.9832 20 6 7.2965 1.7228 3.9783 21 6 8.2050 1.7176 5.0229 22 6 9.2036 0.7592 5.0457 23 17 10.3469 0.7447 6.3521 24 7 9.2988 -0.1431 4.0876 25 6 8.4549 -0.1725 3.0752 26 6 8.6084 -1.2240 2.0066 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6253 2.5214 33 1 3.0236 1.1752 3.2227 34 1 1.6584 3.6356 5.5994 35 1 6.8433 0.4328 1.0320 36 1 6.5071 2.4585 3.9352 37 1 8.1345 2.4520 5.8117 38 1 9.2601 -0.8482 1.2179 39 1 9.0454 -2.1229 2.4416 40 1 7.6306 -1.4617 1.5876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293291132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:55 Heat of formation + Delta-G solvation = -15.848496 kcal Electronic energy + Delta-G solvation = -26796.823109 eV Core-core repulsion = 22831.413629 eV Total energy + Delta-G solvation = -3965.409479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38911 -41.21454 -39.57105 -37.84649 -37.50766 -36.14340 -35.01854 -34.19424 -33.81018 -31.94848 -29.44133 -28.83002 -27.87077 -25.84252 -24.89403 -23.76297 -23.07375 -21.37049 -20.65514 -19.31203 -18.58867 -18.47097 -18.01679 -17.56833 -17.34111 -16.92934 -16.51911 -16.20425 -16.07259 -15.73031 -15.17932 -15.02382 -14.71422 -14.49620 -14.24808 -14.09089 -13.90340 -13.56782 -13.49344 -13.19002 -13.02708 -12.84918 -12.75623 -12.67858 -12.39526 -12.34396 -12.27491 -11.91870 -11.82405 -11.65775 -11.02404 -10.77885 -10.59493 -10.43692 -10.06516 -9.67930 -9.32842 -8.13152 -6.21493 -0.38965 0.00097 0.49199 0.69182 1.10235 1.39750 1.41905 1.50155 1.55716 2.13150 2.40182 2.49180 2.60924 3.21181 3.21596 3.32539 3.53301 3.76394 3.88763 4.03784 4.16618 4.34380 4.46918 4.51547 4.67772 4.72015 4.77860 4.83156 4.90666 4.94613 5.03633 5.13653 5.33430 5.42505 5.51584 5.68420 5.75735 5.83817 5.97523 6.11442 6.28431 6.53399 6.69299 6.82203 7.01608 7.44678 8.95098 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.004026 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.293946 B = 6953.336361 C = 9093.914061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.138 3.862 4 N -0.560 5.560 5 C 0.251 3.749 6 C -0.516 4.516 7 H 0.047 0.953 8 C 0.026 3.974 9 N -0.921 5.921 10 Si 0.947 3.053 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.508 3.492 15 O -0.553 6.553 16 C 0.489 3.511 17 O -0.463 6.463 18 N -0.634 5.634 19 C 0.099 3.901 20 C -0.080 4.080 21 C -0.137 4.137 22 C 0.151 3.849 23 Cl -0.023 7.023 24 N -0.472 5.472 25 C 0.127 3.873 26 C -0.105 4.105 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.019 0.981 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.432 0.568 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -6.463 -5.397 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.016 3.984 4 N -0.289 5.289 5 C 0.131 3.869 6 C -0.555 4.555 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.561 5.561 10 Si 0.773 3.227 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.290 3.710 15 O -0.434 6.434 16 C 0.271 3.729 17 O -0.332 6.332 18 N -0.284 5.284 19 C 0.002 3.998 20 C -0.108 4.108 21 C -0.158 4.158 22 C -0.014 4.014 23 Cl 0.006 6.994 24 N -0.184 5.184 25 C -0.014 4.014 26 C -0.162 4.162 27 H 0.136 0.864 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.273 0.727 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.322 -6.946 -4.868 13.360 hybrid contribution -0.456 1.609 0.373 1.714 sum 9.866 -5.337 -4.495 12.084 Atomic orbital electron populations 1.24064 0.95140 1.03168 0.97732 1.23152 0.96730 0.97916 1.02411 1.20774 0.91961 0.96671 0.88956 1.48223 1.07937 1.59756 1.13012 1.19428 0.94531 0.95043 0.77946 1.21344 1.37862 0.95161 1.01084 0.93429 1.25469 0.94987 1.01545 0.95408 1.70013 1.41439 1.37753 1.06850 0.85729 0.78648 0.81088 0.77199 1.19820 1.21048 1.19847 1.19755 0.83815 0.79910 0.87518 1.90658 1.78822 1.46599 1.27337 1.20517 0.83456 0.79653 0.89247 1.90986 1.77162 1.38067 1.27019 1.42959 1.07408 1.65384 1.12626 1.18695 0.93298 0.96464 0.91384 1.21912 0.98319 0.97131 0.93455 1.21899 0.93648 1.00044 1.00232 1.21685 0.93076 0.94632 0.91961 1.98389 1.59257 1.97858 1.43947 1.66871 1.26612 1.23350 1.01592 1.21410 0.90399 0.94875 0.94731 1.20868 1.04353 0.95996 0.94969 0.86364 0.87785 0.87645 0.89373 0.88907 0.96250 0.94063 0.92830 0.72725 0.83587 0.81845 0.87611 0.88888 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 14.32 67.78 0.97 -3.04 16 2 C -0.18 -5.32 9.84 25.64 0.25 -5.07 16 3 C 0.14 4.57 5.83 85.63 0.50 5.07 16 4 N -0.56 -22.48 2.46 -832.22 -2.05 -24.52 16 5 C 0.25 12.09 4.78 85.63 0.41 12.50 16 6 C -0.52 -26.90 7.78 25.60 0.20 -26.70 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 8 C 0.03 1.37 5.46 84.66 0.46 1.83 16 9 N -0.92 -52.22 13.29 21.45 0.28 -51.93 16 10 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 C 0.51 19.47 7.67 87.24 0.67 20.14 16 15 O -0.55 -20.37 16.04 -3.28 -0.05 -20.42 16 16 C 0.49 18.41 7.59 87.24 0.66 19.07 16 17 O -0.46 -20.75 9.45 -3.35 -0.03 -20.78 16 18 N -0.63 -18.53 4.78 -304.51 -1.46 -19.98 16 19 C 0.10 2.91 6.33 38.29 0.24 3.15 16 20 C -0.08 -2.57 8.83 22.59 0.20 -2.37 16 21 C -0.14 -3.81 9.87 22.36 0.22 -3.59 16 22 C 0.15 4.11 7.27 84.72 0.62 4.72 16 23 Cl -0.02 -0.54 29.10 -2.72 -0.08 -0.61 16 24 N -0.47 -13.00 10.25 -174.33 -1.79 -14.79 16 25 C 0.13 3.24 6.80 42.71 0.29 3.53 16 26 C -0.10 -1.82 9.63 71.24 0.69 -1.13 16 27 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.10 2.45 7.84 -2.91 -0.02 2.43 16 29 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.09 2.89 7.76 -2.39 -0.02 2.87 16 31 H 0.09 2.92 7.36 -2.39 -0.02 2.90 16 32 H 0.02 0.99 8.02 -2.39 -0.02 0.97 16 33 H 0.04 2.21 5.85 -2.39 -0.01 2.20 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 35 H 0.43 10.23 7.25 -92.70 -0.67 9.56 16 36 H 0.15 5.46 6.14 -2.91 -0.02 5.44 16 37 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.08 1.40 7.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.73 362.17 3.66 -59.08 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.42 Total: 21.17 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 6.38 Total: 28.10 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -5.00 Total: -111.23 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.08 Total: -41.20 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.61 kcal Total: -62.73 3.66 -59.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293291132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.227 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds