Wall clock time and date at job start Tue Mar 31 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47020 * 2 1 4 4 C 1.34230 * 116.99598 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00469 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99692 * 180.02562 * 4 3 2 7 7 F 1.39905 * 109.47072 * 274.99973 * 6 4 3 8 8 F 1.39900 * 109.47439 * 34.99792 * 6 4 3 9 9 C 1.52997 * 109.47212 * 154.99905 * 6 4 3 10 10 H 1.09001 * 109.47289 * 60.00082 * 9 6 4 11 11 N 1.46496 * 109.47294 * 299.99957 * 9 6 4 12 12 C 1.34774 * 120.00256 * 154.99900 * 11 9 6 13 13 O 1.21277 * 120.00311 * 359.97438 * 12 11 9 14 14 C 1.50706 * 120.00271 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.47405 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00068 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99884 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00100 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46994 * 90.00232 * 20 18 16 22 22 H 1.48498 * 109.46971 * 210.00227 * 20 18 16 23 23 H 1.48502 * 109.47138 * 330.00369 * 20 18 16 24 24 C 1.52997 * 109.47232 * 180.02562 * 9 6 4 25 25 C 1.53006 * 117.49641 * 248.74470 * 24 9 6 26 26 C 1.53009 * 117.49877 * 180.09110 * 24 9 6 27 27 H 1.08996 * 109.47448 * 300.00538 * 1 2 3 28 28 H 1.09008 * 109.46947 * 60.00035 * 1 2 3 29 29 H 1.09003 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47174 * 240.00192 * 2 1 3 31 31 H 1.08995 * 109.46888 * 119.99630 * 2 1 3 32 32 H 0.97006 * 119.99579 * 334.99969 * 11 9 6 33 33 H 1.08999 * 109.46712 * 300.00274 * 14 12 11 34 34 H 1.09006 * 109.47139 * 59.99438 * 14 12 11 35 35 H 0.97005 * 119.99730 * 179.97438 * 19 18 16 36 36 H 1.08993 * 115.55379 * 34.41658 * 24 9 6 37 37 H 1.08995 * 117.50052 * 0.02562 * 25 24 9 38 38 H 1.09003 * 117.49290 * 145.02004 * 25 24 9 39 39 H 1.08998 * 117.49144 * 214.97734 * 26 24 9 40 40 H 1.08993 * 117.49470 * 359.96935 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 9 3.9932 3.4126 -1.3127 8 9 3.1003 3.7811 0.7576 9 6 5.3235 2.9088 0.6113 10 1 5.9627 2.2515 0.0219 11 7 5.2476 2.4112 1.9870 12 6 6.3224 1.8271 2.5527 13 8 7.3524 1.7129 1.9226 14 6 6.2442 1.3146 3.9678 15 16 7.8353 0.5898 4.4359 16 6 7.4696 0.0878 6.0848 17 1 6.4884 0.2677 6.4990 18 6 8.4426 -0.5378 6.8517 19 7 8.1693 -0.9133 8.0834 20 14 10.1397 -0.8483 6.1355 21 1 11.0173 0.3155 6.4195 22 1 10.7210 -2.0684 6.7509 23 1 10.0300 -1.0389 4.6669 24 6 5.9080 4.3227 0.6125 25 6 7.0844 4.6016 -0.3253 26 6 7.3153 4.5049 1.1848 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 4.4236 2.5021 2.4909 33 1 6.0083 2.1393 4.6402 34 1 5.4651 0.5554 4.0367 35 1 8.8492 -1.3509 8.6192 36 1 5.1911 5.1277 0.7737 37 1 7.4415 3.7779 -0.9434 38 1 7.1414 5.5903 -0.7808 39 1 7.5240 5.4300 1.7222 40 1 7.8243 3.6175 1.5609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294502345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:33 Heat of formation + Delta-G solvation = -187.473199 kcal Electronic energy + Delta-G solvation = -27738.870082 eV Core-core repulsion = 23317.372917 eV Total energy + Delta-G solvation = -4421.497165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.76961 -47.75679 -41.04747 -39.86616 -37.49993 -37.11387 -34.44867 -32.46353 -32.27452 -30.90817 -28.81216 -26.17714 -25.61248 -23.47859 -22.40531 -21.69762 -21.30318 -20.63665 -18.99776 -18.43980 -18.27975 -17.65379 -17.13411 -16.87001 -16.44722 -16.09227 -15.43921 -15.06188 -15.01133 -14.62889 -14.59659 -14.34748 -14.03311 -14.02634 -13.85068 -13.52665 -13.38073 -13.24682 -12.82388 -12.50111 -12.41784 -12.35805 -12.08235 -12.02924 -11.40084 -11.29736 -11.06232 -11.03972 -11.02648 -10.69417 -10.51509 -10.38798 -9.88862 -9.66319 -9.22727 -9.02457 -8.54683 -6.95071 -6.31218 -4.03438 1.25705 1.52703 2.47320 2.74349 3.00419 3.17389 3.24963 3.31198 3.48343 3.52622 3.80354 3.86431 4.12204 4.30699 4.49576 4.50343 4.52223 4.63884 4.82926 4.84105 4.87277 4.97116 5.07929 5.16470 5.18877 5.34658 5.37594 5.49778 5.60996 5.69292 5.78210 5.83475 5.94259 6.01060 6.13934 6.34953 6.89168 7.32250 7.91721 8.29222 8.39370 9.14747 10.78004 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.003453 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.217324 B = 8108.080191 C = 9636.852919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.340 6.340 4 C 0.428 3.572 5 O -0.445 6.445 6 C 0.319 3.681 7 F -0.160 7.160 8 F -0.169 7.169 9 C 0.155 3.845 10 H 0.130 0.870 11 N -0.729 5.729 12 C 0.544 3.456 13 O -0.506 6.506 14 C -0.124 4.124 15 S -0.136 6.136 16 C -0.523 4.523 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.185 4.185 25 C -0.163 4.163 26 C -0.166 4.166 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.402 0.598 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 8.695 -18.567 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.257 6.257 4 C 0.265 3.735 5 O -0.328 6.328 6 C 0.280 3.720 7 F -0.141 7.141 8 F -0.150 7.150 9 C 0.048 3.952 10 H 0.148 0.852 11 N -0.384 5.384 12 C 0.332 3.668 13 O -0.380 6.380 14 C -0.274 4.274 15 S 0.090 5.910 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.204 4.204 25 C -0.201 4.201 26 C -0.202 4.202 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.306 8.083 -19.448 24.393 hybrid contribution -1.157 0.010 0.879 1.452 sum -13.463 8.093 -18.569 24.322 Atomic orbital electron populations 1.21828 0.91876 1.03431 1.03837 1.23287 0.95950 0.78804 1.03492 1.86560 1.22371 1.33895 1.82845 1.23753 0.82515 0.91734 0.75515 1.90836 1.60218 1.40722 1.41072 1.20883 0.91219 0.82814 0.77112 1.93141 1.96801 1.88715 1.35437 1.93116 1.74111 1.72443 1.75318 1.21216 0.90635 0.97188 0.86131 0.85191 1.45820 1.16624 1.62834 1.13094 1.20245 0.82503 0.75767 0.88322 1.90641 1.29306 1.54577 1.63477 1.23271 1.05742 1.04195 0.94191 1.84773 1.12340 1.75920 1.17920 1.22310 1.03354 1.45272 0.96087 0.89360 1.24704 0.98772 0.93685 0.94073 1.69939 1.34964 1.38731 1.07983 0.86745 0.84111 0.78895 0.82158 1.19172 1.19914 1.15900 1.22498 0.93269 0.95461 1.09217 1.22990 1.00239 1.03126 0.93725 1.23360 0.95884 1.05152 0.95831 0.91087 0.91318 0.89693 0.90561 0.90228 0.76304 0.88156 0.88352 0.91909 0.86845 0.88326 0.88436 0.88680 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.34 -3.55 10.05 -39.26 -0.39 -3.94 16 4 C 0.43 5.07 6.97 36.01 0.25 5.32 16 5 O -0.45 -6.33 15.70 -18.75 -0.29 -6.62 16 6 C 0.32 3.50 1.72 -27.88 -0.05 3.46 16 7 F -0.16 -1.74 16.77 2.25 0.04 -1.70 16 8 F -0.17 -1.76 15.97 2.25 0.04 -1.73 16 9 C 0.16 1.88 1.51 -67.94 -0.10 1.78 16 10 H 0.13 1.79 7.07 -51.93 -0.37 1.43 16 11 N -0.73 -9.52 4.47 -53.81 -0.24 -9.76 16 12 C 0.54 9.28 7.18 -10.98 -0.08 9.20 16 13 O -0.51 -10.06 12.89 5.56 0.07 -9.98 16 14 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 15 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 16 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 17 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.34 13.97 55.49 0.78 -25.57 16 20 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 24 C -0.19 -2.06 5.01 -90.61 -0.45 -2.51 16 25 C -0.16 -1.71 10.18 -26.69 -0.27 -1.98 16 26 C -0.17 -2.06 9.74 -26.69 -0.26 -2.32 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.40 4.36 8.31 -40.82 -0.34 4.02 16 33 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.11 1.13 7.70 -51.93 -0.40 0.73 16 37 H 0.10 1.05 8.05 -51.93 -0.42 0.64 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.13 1.97 5.02 -51.93 -0.26 1.71 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -32.91 363.29 -6.32 -39.24 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.17 Total: 3.88 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 0.09 Total: -0.77 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.53 Total: -35.33 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.62 Total: -20.55 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.07 Total: -3.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.91 -6.32 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294502345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.238 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds