Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47020 * 2 1 4 4 C 1.34230 * 116.99598 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00469 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99692 * 180.02562 * 4 3 2 7 7 F 1.39905 * 109.47072 * 274.99973 * 6 4 3 8 8 F 1.39900 * 109.47439 * 34.99792 * 6 4 3 9 9 C 1.52997 * 109.47212 * 154.99905 * 6 4 3 10 10 H 1.09001 * 109.47289 * 60.00082 * 9 6 4 11 11 N 1.46496 * 109.47294 * 299.99957 * 9 6 4 12 12 C 1.34774 * 120.00256 * 154.99900 * 11 9 6 13 13 O 1.21277 * 120.00311 * 359.97438 * 12 11 9 14 14 C 1.50706 * 120.00271 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.47405 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00068 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99884 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00100 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46994 * 90.00232 * 20 18 16 22 22 H 1.48498 * 109.46971 * 210.00227 * 20 18 16 23 23 H 1.48502 * 109.47138 * 330.00369 * 20 18 16 24 24 C 1.52997 * 109.47232 * 180.02562 * 9 6 4 25 25 C 1.53006 * 117.49641 * 248.74470 * 24 9 6 26 26 C 1.53009 * 117.49877 * 180.09110 * 24 9 6 27 27 H 1.08996 * 109.47448 * 300.00538 * 1 2 3 28 28 H 1.09008 * 109.46947 * 60.00035 * 1 2 3 29 29 H 1.09003 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47174 * 240.00192 * 2 1 3 31 31 H 1.08995 * 109.46888 * 119.99630 * 2 1 3 32 32 H 0.97006 * 119.99579 * 334.99969 * 11 9 6 33 33 H 1.08999 * 109.46712 * 300.00274 * 14 12 11 34 34 H 1.09006 * 109.47139 * 59.99438 * 14 12 11 35 35 H 0.97005 * 119.99730 * 179.97438 * 19 18 16 36 36 H 1.08993 * 115.55379 * 34.41658 * 24 9 6 37 37 H 1.08995 * 117.50052 * 0.02562 * 25 24 9 38 38 H 1.09003 * 117.49290 * 145.02004 * 25 24 9 39 39 H 1.08998 * 117.49144 * 214.97734 * 26 24 9 40 40 H 1.08993 * 117.49470 * 359.96935 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 9 3.9932 3.4126 -1.3127 8 9 3.1003 3.7811 0.7576 9 6 5.3235 2.9088 0.6113 10 1 5.9627 2.2515 0.0219 11 7 5.2476 2.4112 1.9870 12 6 6.3224 1.8271 2.5527 13 8 7.3524 1.7129 1.9226 14 6 6.2442 1.3146 3.9678 15 16 7.8353 0.5898 4.4359 16 6 7.4696 0.0878 6.0848 17 1 6.4884 0.2677 6.4990 18 6 8.4426 -0.5378 6.8517 19 7 8.1693 -0.9133 8.0834 20 14 10.1397 -0.8483 6.1355 21 1 11.0173 0.3155 6.4195 22 1 10.7210 -2.0684 6.7509 23 1 10.0300 -1.0389 4.6669 24 6 5.9080 4.3227 0.6125 25 6 7.0844 4.6016 -0.3253 26 6 7.3153 4.5049 1.1848 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 4.4236 2.5021 2.4909 33 1 6.0083 2.1393 4.6402 34 1 5.4651 0.5554 4.0367 35 1 8.8492 -1.3509 8.6192 36 1 5.1911 5.1277 0.7737 37 1 7.4415 3.7779 -0.9434 38 1 7.1414 5.5903 -0.7808 39 1 7.5240 5.4300 1.7222 40 1 7.8243 3.6175 1.5609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294502345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = -207.858510 kcal Electronic energy + Delta-G solvation = -27739.754055 eV Core-core repulsion = 23317.372917 eV Total energy + Delta-G solvation = -4422.381138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.65945 -48.63605 -41.98616 -41.09152 -38.51982 -38.06190 -35.60789 -34.67627 -32.91148 -32.10673 -30.09513 -27.87756 -27.08236 -24.13227 -23.29928 -22.56353 -22.48319 -21.72727 -20.09265 -19.85990 -19.24983 -18.98705 -18.18064 -17.93332 -17.46969 -17.28497 -17.08358 -16.65518 -15.96347 -15.89894 -15.50220 -15.41610 -15.14485 -15.13318 -14.92871 -14.90308 -14.70935 -14.34344 -13.75880 -13.68330 -13.41291 -13.34476 -13.19092 -13.11997 -13.02337 -12.66518 -12.64492 -12.34071 -11.98841 -11.88597 -11.72724 -11.48821 -11.30262 -11.17333 -11.04488 -10.55839 -10.40021 -9.00011 -8.51962 -6.22726 0.31730 0.66494 0.91655 1.31307 1.38435 1.41132 1.50163 1.81856 2.19203 2.24366 2.35247 2.66017 2.86519 2.91356 2.97177 3.18610 3.58606 3.65160 3.91225 3.91903 3.94844 4.00118 4.08439 4.17581 4.24409 4.38805 4.41753 4.59881 4.79917 4.86610 4.92091 4.94529 5.00220 5.14963 5.23300 5.33680 5.70198 6.00824 6.11162 6.14773 6.93066 6.98189 8.60512 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.003453 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.217324 B = 8108.080191 C = 9636.852919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.339 6.339 4 C 0.431 3.569 5 O -0.474 6.474 6 C 0.330 3.670 7 F -0.156 7.156 8 F -0.161 7.161 9 C 0.154 3.846 10 H 0.114 0.886 11 N -0.711 5.711 12 C 0.551 3.449 13 O -0.536 6.536 14 C -0.112 4.112 15 S -0.163 6.163 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.260 1.260 23 H -0.236 1.236 24 C -0.181 4.181 25 C -0.150 4.150 26 C -0.182 4.182 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.415 0.585 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.277 0.723 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 9.799 -20.101 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.255 6.255 4 C 0.269 3.731 5 O -0.360 6.360 6 C 0.291 3.709 7 F -0.136 7.136 8 F -0.142 7.142 9 C 0.048 3.952 10 H 0.132 0.868 11 N -0.366 5.366 12 C 0.338 3.662 13 O -0.412 6.412 14 C -0.263 4.263 15 S 0.063 5.937 16 C -0.678 4.678 17 H 0.080 0.920 18 C -0.159 4.159 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.184 1.184 23 H -0.160 1.160 24 C -0.200 4.200 25 C -0.187 4.187 26 C -0.218 4.218 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.252 0.748 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.334 9.207 -20.987 26.514 hybrid contribution -1.031 -0.292 1.301 1.686 sum -14.365 8.915 -19.686 25.949 Atomic orbital electron populations 1.21859 0.89699 1.04758 1.04089 1.23588 0.97643 0.77719 1.03498 1.86571 1.21421 1.35332 1.82208 1.23875 0.82850 0.91664 0.74746 1.90833 1.60888 1.41645 1.42596 1.20552 0.90416 0.82714 0.77243 1.93155 1.96738 1.88613 1.35118 1.93137 1.73812 1.72131 1.75136 1.21245 0.91393 0.97634 0.84949 0.86821 1.45520 1.15987 1.61451 1.13619 1.19813 0.82964 0.76007 0.87456 1.90648 1.30649 1.56005 1.63914 1.23241 1.02272 1.04832 0.95944 1.84657 1.16891 1.76676 1.15429 1.22472 1.02328 1.45018 0.98024 0.91983 1.25546 1.02350 0.93546 0.94416 1.70018 1.36465 1.39771 1.09238 0.85884 0.79855 0.79396 0.81351 1.18547 1.18441 1.16011 1.22543 0.93204 0.94990 1.09245 1.23091 0.98824 1.04283 0.92528 1.23232 0.96772 1.04277 0.97567 0.91045 0.90814 0.87818 0.90263 0.90629 0.74778 0.86417 0.87175 0.91361 0.84977 0.88873 0.85895 0.87527 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.34 -6.55 10.05 -51.41 -0.52 -7.07 16 4 C 0.43 9.65 6.97 71.24 0.50 10.14 16 5 O -0.47 -13.20 15.70 21.98 0.35 -12.86 16 6 C 0.33 6.64 1.72 29.85 0.05 6.69 16 7 F -0.16 -3.04 16.77 44.97 0.75 -2.28 16 8 F -0.16 -2.94 15.97 44.97 0.72 -2.22 16 9 C 0.15 3.54 1.51 44.99 0.07 3.61 16 10 H 0.11 3.09 7.07 -2.39 -0.02 3.07 16 11 N -0.71 -17.66 4.47 -442.55 -1.98 -19.64 16 12 C 0.55 18.44 7.18 87.66 0.63 19.07 16 13 O -0.54 -21.34 12.89 -3.02 -0.04 -21.38 16 14 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 15 S -0.16 -8.07 18.55 -56.49 -1.05 -9.12 16 16 C -0.53 -30.61 10.04 67.95 0.68 -29.92 16 17 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 18 C 0.05 2.73 5.50 84.86 0.47 3.20 16 19 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 20 Si 0.91 44.59 27.74 68.60 1.90 46.50 16 21 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 24 C -0.18 -3.64 5.01 -10.79 -0.05 -3.70 16 25 C -0.15 -2.84 10.18 30.62 0.31 -2.53 16 26 C -0.18 -4.30 9.74 30.62 0.30 -4.00 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 31 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.42 8.20 8.31 -92.70 -0.77 7.43 16 33 H 0.12 3.96 8.14 -2.40 -0.02 3.94 16 34 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 35 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.13 2.21 7.70 -2.39 -0.02 2.19 16 37 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 38 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 2.91 5.02 -2.39 -0.01 2.90 16 Total: -1.00 -71.27 363.29 5.29 -65.97 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.28 Total: 17.97 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.58 Total: -0.59 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.68 Total: -74.92 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.21 Total: -41.30 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.47 Total: -4.51 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.50 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.05 Total: -9.12 kcal Total: -71.27 5.29 -65.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294502345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.885 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds