Wall clock time and date at job start Tue Mar 31 2020 19:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00257 * 2 1 4 4 N 1.46499 * 109.47725 * 124.99638 * 3 2 1 5 5 C 1.46498 * 120.00019 * 274.82972 * 4 3 2 6 6 C 1.50702 * 109.47323 * 263.66841 * 5 4 3 7 7 H 1.08003 * 119.99807 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99925 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47017 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46698 * 120.00102 * 10 8 6 13 13 H 1.48498 * 109.47365 * 240.00238 * 10 8 6 14 14 C 1.34770 * 119.99938 * 94.82471 * 4 3 2 15 15 O 1.21361 * 120.00460 * 354.62508 * 14 4 3 16 16 C 1.49352 * 120.00293 * 174.62468 * 14 4 3 17 17 O 1.21379 * 119.99835 * 0.17140 * 16 14 4 18 18 N 1.34777 * 120.00585 * 180.17598 * 16 14 4 19 19 C 1.39743 * 120.00221 * 184.94012 * 18 16 14 20 20 C 1.38958 * 120.48832 * 326.64483 * 19 18 16 21 21 N 1.31775 * 120.68107 * 180.02562 * 20 19 18 22 22 C 1.31880 * 121.81952 * 359.97438 * 21 20 19 23 23 C 1.38363 * 120.91254 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.39408 * 180.02562 * 23 22 21 25 25 C 1.38639 * 119.21635 * 0.02562 * 23 22 21 26 26 C 1.50704 * 120.82831 * 180.25080 * 25 23 22 27 27 H 1.08001 * 120.00120 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99580 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00224 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.46817 * 4.99564 * 3 2 1 31 31 H 1.08996 * 109.47219 * 245.00100 * 3 2 1 32 32 H 1.08998 * 109.47370 * 23.66750 * 5 4 3 33 33 H 1.08995 * 109.47179 * 143.66670 * 5 4 3 34 34 H 0.97002 * 119.99727 * 179.97438 * 9 8 6 35 35 H 0.97004 * 119.99620 * 4.93602 * 18 16 14 36 36 H 1.08000 * 119.65923 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.54496 * 179.97438 * 22 21 20 38 38 H 1.08992 * 109.47529 * 269.72595 * 26 25 23 39 39 H 1.09006 * 109.46592 * 29.72320 * 26 25 23 40 40 H 1.09001 * 109.47033 * 149.71917 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5294 1.7659 2.4514 6 6 2.8597 3.2233 2.6461 7 1 3.3654 3.7714 1.8649 8 6 2.5163 3.8569 3.8214 9 7 1.9010 3.1893 4.7729 10 14 2.9264 5.6633 4.0630 11 1 3.6146 6.1808 2.8531 12 1 1.6740 6.4297 4.2855 13 1 3.8160 5.8156 5.2422 14 6 4.2767 0.9575 0.9580 15 8 4.6382 0.5059 -0.1089 16 6 5.2538 1.0982 2.0788 17 8 4.8917 1.5469 3.1469 18 7 6.5377 0.7270 1.9043 19 6 7.4275 0.7612 2.9813 20 6 7.3029 1.7315 3.9681 21 7 8.1402 1.7677 4.9851 22 6 9.1209 0.8948 5.1096 23 6 9.3099 -0.1011 4.1679 24 17 10.6050 -1.2435 4.3456 25 6 8.4529 -0.1760 3.0808 26 6 8.6220 -1.2493 2.0365 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4025 -0.9313 32 1 1.4508 1.6253 2.5214 33 1 3.0235 1.1751 3.2227 34 1 1.6598 3.6351 5.6000 35 1 6.8440 0.4360 1.0311 36 1 6.5117 2.4636 3.9010 37 1 9.7862 0.9588 5.9580 38 1 9.2825 -0.8884 1.2481 39 1 9.0559 -2.1377 2.4956 40 1 7.6500 -1.4983 1.6106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296831514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:18 Heat of formation + Delta-G solvation = -16.327329 kcal Electronic energy + Delta-G solvation = -26864.008451 eV Core-core repulsion = 22898.578208 eV Total energy + Delta-G solvation = -3965.430243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40540 -41.20289 -39.55615 -37.75688 -37.60069 -36.46566 -35.04033 -34.26640 -33.78607 -31.32741 -29.44530 -29.01450 -27.94158 -25.86500 -24.89567 -23.78426 -23.00610 -21.42266 -20.64761 -19.22855 -18.67348 -18.55984 -17.80439 -17.65506 -17.31513 -16.93282 -16.49843 -16.17729 -16.09441 -15.73696 -15.54862 -15.08923 -14.63113 -14.37153 -14.23735 -14.07943 -13.97975 -13.90557 -13.54902 -13.08267 -13.02279 -12.93366 -12.83720 -12.71089 -12.38854 -12.28944 -12.25673 -12.02507 -11.89061 -11.63990 -10.76239 -10.68940 -10.46810 -10.24491 -10.12430 -9.70203 -9.46974 -8.13814 -6.21750 -0.30226 -0.12925 0.49788 0.83563 1.12547 1.38374 1.42519 1.50559 1.56125 2.13726 2.40258 2.53398 2.60235 3.21322 3.28990 3.44479 3.48463 3.51310 3.90801 4.00662 4.03477 4.16353 4.45803 4.49089 4.59272 4.64201 4.77694 4.82492 4.88844 4.93591 5.03393 5.08067 5.32959 5.42828 5.52016 5.68139 5.75565 5.83420 5.96134 6.10964 6.27217 6.63739 6.77273 6.82853 7.01008 7.44686 8.94677 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.003988 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.906175 B = 7018.727453 C = 9050.566044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.137 3.863 4 N -0.559 5.559 5 C 0.251 3.749 6 C -0.516 4.516 7 H 0.048 0.952 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.509 3.491 15 O -0.553 6.553 16 C 0.490 3.510 17 O -0.463 6.463 18 N -0.634 5.634 19 C 0.105 3.895 20 C 0.086 3.914 21 N -0.479 5.479 22 C 0.096 3.904 23 C -0.074 4.074 24 Cl -0.028 7.028 25 C -0.053 4.053 26 C -0.121 4.121 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.431 0.569 36 H 0.153 0.847 37 H 0.191 0.809 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.193 -9.822 -6.552 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.016 3.984 4 N -0.288 5.288 5 C 0.130 3.870 6 C -0.554 4.554 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.560 5.560 10 Si 0.772 3.228 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.213 1.213 14 C 0.291 3.709 15 O -0.434 6.434 16 C 0.272 3.728 17 O -0.333 6.333 18 N -0.285 5.285 19 C 0.007 3.993 20 C -0.072 4.072 21 N -0.188 5.188 22 C -0.063 4.063 23 C -0.103 4.103 24 Cl 0.000 7.000 25 C -0.064 4.064 26 C -0.177 4.177 27 H 0.122 0.878 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.271 0.729 36 H 0.170 0.830 37 H 0.208 0.792 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.913 -9.140 -5.548 16.008 hybrid contribution 0.198 0.342 -0.356 0.532 sum 12.112 -8.798 -5.904 16.092 Atomic orbital electron populations 1.24067 0.95127 1.03187 0.97684 1.23145 0.96732 0.97879 1.02452 1.20783 0.91960 0.96720 0.88912 1.48216 1.07914 1.59679 1.13023 1.19426 0.94587 0.95004 0.77939 1.21381 1.37738 0.95199 1.01114 0.93388 1.25460 0.94964 1.01538 0.95435 1.70016 1.41547 1.37678 1.06778 0.85693 0.78005 0.81113 0.77949 1.19403 1.20082 1.21291 1.19707 0.83797 0.79936 0.87444 1.90654 1.78813 1.46654 1.27293 1.20538 0.83434 0.79601 0.89276 1.91006 1.77102 1.38110 1.27064 1.42908 1.07348 1.65633 1.12565 1.18547 0.92845 0.96142 0.91768 1.23113 0.97271 0.96608 0.90214 1.67889 1.03842 1.25226 1.21832 1.23245 0.95013 0.89437 0.98602 1.21782 0.94646 0.96366 0.97546 1.98370 1.46169 1.58225 1.97193 1.20259 0.93499 0.95603 0.97048 1.20977 1.04351 0.95804 0.96600 0.87766 0.86338 0.87657 0.89331 0.88892 0.96111 0.94134 0.92871 0.72858 0.83010 0.79233 0.87587 0.88769 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 14.32 67.78 0.97 -3.08 16 2 C -0.18 -5.39 9.84 25.65 0.25 -5.13 16 3 C 0.14 4.64 5.83 85.63 0.50 5.14 16 4 N -0.56 -22.86 2.46 -832.22 -2.05 -24.90 16 5 C 0.25 12.33 4.78 85.63 0.41 12.74 16 6 C -0.52 -27.59 7.78 25.60 0.20 -27.39 16 7 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.42 5.46 84.65 0.46 1.88 16 9 N -0.92 -53.57 13.29 21.44 0.28 -53.29 16 10 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 C 0.51 19.91 7.67 87.24 0.67 20.58 16 15 O -0.55 -20.69 16.04 -3.28 -0.05 -20.74 16 16 C 0.49 18.96 7.58 87.24 0.66 19.62 16 17 O -0.46 -21.62 9.46 -3.34 -0.03 -21.65 16 18 N -0.63 -19.11 4.82 -304.54 -1.47 -20.57 16 19 C 0.10 3.14 6.33 38.30 0.24 3.38 16 20 C 0.09 3.09 9.89 84.87 0.84 3.93 16 21 N -0.48 -15.87 10.35 -195.18 -2.02 -17.89 16 22 C 0.10 2.40 10.98 84.72 0.93 3.33 16 23 C -0.07 -1.64 6.34 22.40 0.14 -1.50 16 24 Cl -0.03 -0.48 27.47 -2.72 -0.07 -0.55 16 25 C -0.05 -1.24 5.94 -19.52 -0.12 -1.36 16 26 C -0.12 -1.95 9.18 71.24 0.65 -1.29 16 27 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 28 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.09 2.95 7.76 -2.38 -0.02 2.93 16 31 H 0.09 2.97 7.36 -2.39 -0.02 2.95 16 32 H 0.02 1.07 8.02 -2.39 -0.02 1.06 16 33 H 0.04 2.22 5.84 -2.39 -0.01 2.21 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.43 10.54 7.39 -92.71 -0.69 9.86 16 36 H 0.15 6.45 6.09 -2.91 -0.02 6.43 16 37 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.32 7.02 -2.38 -0.02 1.30 16 40 H 0.08 1.29 7.28 -2.39 -0.02 1.28 16 Total: -1.00 -65.37 359.72 3.84 -61.52 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.41 Total: 20.94 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 6.82 Total: 30.84 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.25 Total: -116.65 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.08 Total: -42.39 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.07 Total: -0.55 kcal Total: -65.37 3.84 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296831514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.194 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds