Wall clock time and date at job start Tue Mar 31 2020 19:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99538 * 2 1 4 4 H 1.48499 * 109.46966 * 270.00097 * 3 2 1 5 5 H 1.48493 * 109.47124 * 30.00489 * 3 2 1 6 6 H 1.48501 * 109.46391 * 150.00218 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00487 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99784 * 269.99986 * 10 9 7 12 12 C 1.52999 * 109.46969 * 269.99779 * 11 10 9 13 13 F 1.39902 * 109.47175 * 59.99740 * 12 11 10 14 14 F 1.39899 * 109.47357 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.47072 * 300.00097 * 12 11 10 16 16 C 1.34777 * 120.00453 * 89.99405 * 10 9 7 17 17 O 1.21287 * 119.99762 * 0.02562 * 16 10 9 18 18 C 1.50695 * 120.00304 * 180.02562 * 16 10 9 19 19 N 1.46497 * 109.47265 * 180.02562 * 18 16 10 20 20 C 1.46415 * 119.53437 * 269.97763 * 19 18 16 21 21 C 1.53364 * 109.41467 * 144.00620 * 20 19 18 22 22 C 1.50807 * 109.00705 * 47.02132 * 21 20 19 23 23 O 1.21233 * 120.01980 * 145.62560 * 22 21 20 24 24 N 1.34569 * 119.96446 * 325.34354 * 22 21 20 25 25 C 1.34286 * 119.53702 * 89.99804 * 19 18 16 26 26 O 1.21539 * 119.20750 * 5.69273 * 25 19 18 27 27 H 0.97006 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47300 * 59.99861 * 9 7 2 29 29 H 1.09002 * 109.46955 * 299.99601 * 9 7 2 30 30 H 1.08998 * 109.46996 * 29.99432 * 11 10 9 31 31 H 1.08996 * 109.47077 * 149.99875 * 11 10 9 32 32 H 1.09006 * 109.47300 * 59.99935 * 18 16 10 33 33 H 1.09000 * 109.47535 * 300.00138 * 18 16 10 34 34 H 1.08997 * 109.46076 * 264.18235 * 20 19 18 35 35 H 1.09000 * 109.46310 * 24.15290 * 20 19 18 36 36 H 1.08997 * 109.71839 * 287.09225 * 21 20 19 37 37 H 1.08996 * 109.49190 * 166.80558 * 21 20 19 38 38 H 0.96998 * 119.50582 * 184.71384 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1688 -1.2701 12 6 1.7496 -5.2998 -1.7130 13 9 0.4541 -4.7992 -1.8809 14 9 2.2047 -5.8306 -2.9247 15 9 1.7390 -6.3034 -0.7384 16 6 2.6402 -4.1253 1.1658 17 8 2.2451 -3.6651 2.2161 18 6 3.6199 -5.2703 1.1660 19 7 3.9357 -5.6426 2.5472 20 6 5.0596 -4.9981 3.2294 21 6 4.7108 -4.7984 4.7095 22 6 4.1328 -6.0800 5.2551 23 8 4.3500 -6.4027 6.4034 24 7 3.3712 -6.8623 4.4685 25 6 3.1907 -6.5703 3.1697 26 8 2.3327 -7.1604 2.5429 27 1 -0.4851 0.8401 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.6882 -3.3868 -2.0294 31 1 3.6893 -4.5588 -1.1392 32 1 4.5328 -4.9676 0.6531 33 1 3.1804 -6.1248 0.6513 34 1 5.9456 -5.6271 3.1433 35 1 5.2560 -4.0293 2.7701 36 1 3.9790 -3.9969 4.8099 37 1 5.6130 -4.5406 5.2641 38 1 2.9465 -7.6490 4.8449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331121089.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:39 Heat of formation + Delta-G solvation = -236.594461 kcal Electronic energy + Delta-G solvation = -30978.602561 eV Core-core repulsion = 26021.054913 eV Total energy + Delta-G solvation = -4957.547648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.86630 -47.43353 -47.29261 -41.72305 -39.54082 -38.70274 -36.30662 -35.40104 -34.67954 -32.89666 -31.61352 -29.45385 -28.50627 -26.43175 -25.20202 -23.46865 -23.34891 -22.58377 -19.75742 -18.89285 -18.45104 -18.29811 -18.26408 -17.81380 -17.51378 -16.94264 -16.43944 -16.07116 -15.99728 -15.05575 -14.93564 -14.70138 -14.56914 -14.45204 -14.19795 -14.18240 -14.02604 -13.76852 -13.57031 -13.49021 -13.44798 -13.00185 -12.78852 -12.53663 -12.33818 -12.07604 -11.94685 -11.56962 -11.36135 -11.05230 -10.76131 -10.71769 -10.36382 -10.32608 -10.29304 -9.88435 -9.75438 -8.77789 -8.56605 -8.14541 -6.17414 -4.24195 1.62734 2.20496 2.73019 2.94674 3.05697 3.16753 3.21135 3.29017 3.30852 3.46414 4.05783 4.16878 4.21478 4.32174 4.34682 4.38463 4.71575 4.77446 4.82240 5.06899 5.16507 5.17738 5.21044 5.34578 5.46976 5.56212 5.82645 5.96816 6.33697 6.73767 7.16177 7.24820 7.28720 7.38454 7.75795 7.93427 8.04090 8.07718 8.58911 8.80064 9.41371 10.90883 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.004834 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.940882 B = 5790.559971 C = 7927.703541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.243 3.757 10 N -0.593 5.593 11 C 0.072 3.928 12 C 0.425 3.575 13 F -0.173 7.173 14 F -0.188 7.188 15 F -0.180 7.180 16 C 0.496 3.504 17 O -0.512 6.512 18 C 0.091 3.909 19 N -0.597 5.597 20 C 0.112 3.888 21 C -0.159 4.159 22 C 0.528 3.472 23 O -0.510 6.510 24 N -0.674 5.674 25 C 0.714 3.286 26 O -0.549 6.549 27 H 0.265 0.735 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.111 -11.139 -0.363 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.125 3.875 10 N -0.326 5.326 11 C -0.056 4.056 12 C 0.369 3.631 13 F -0.155 7.155 14 F -0.169 7.169 15 F -0.161 7.161 16 C 0.281 3.719 17 O -0.387 6.387 18 C -0.036 4.036 19 N -0.333 5.333 20 C -0.011 4.011 21 C -0.199 4.199 22 C 0.316 3.684 23 O -0.383 6.383 24 N -0.343 5.343 25 C 0.416 3.584 26 O -0.422 6.422 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 11.437 -11.076 0.435 15.928 hybrid contribution -0.009 0.551 -0.036 0.553 sum 11.429 -10.525 0.398 15.542 Atomic orbital electron populations 1.69934 1.06052 1.27297 1.49438 1.24939 0.94868 0.99290 0.94828 0.86474 0.79725 0.82975 0.78076 1.20534 1.21069 1.19909 1.21334 0.93277 0.90352 1.52320 0.92239 1.19521 0.87125 0.81446 0.99431 1.48208 1.46610 1.35375 1.02404 1.22661 0.96004 0.95094 0.91858 1.21716 0.82154 0.84399 0.74834 1.93228 1.40046 1.87011 1.95199 1.93161 1.88888 1.88027 1.46853 1.93153 1.96431 1.63933 1.62600 1.20832 0.82796 0.83868 0.84371 1.90694 1.57056 1.60518 1.30394 1.21798 1.00071 0.99427 0.82267 1.46539 1.31962 1.40592 1.14233 1.21719 0.88158 1.00051 0.91124 1.22324 1.05065 0.95869 0.96675 1.21022 0.76500 0.85338 0.85514 1.90771 1.57219 1.72661 1.17649 1.44239 1.49947 1.30208 1.09877 1.15520 0.81392 0.80424 0.81090 1.91024 1.34033 1.53193 1.63987 0.92486 0.94041 0.93344 0.84937 0.87139 0.87097 0.85455 0.90331 0.87766 0.85868 0.85754 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -13.74 9.39 -34.44 -0.32 -14.06 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.24 5.84 4.96 -5.19 -0.03 5.82 16 10 N -0.59 -11.02 2.37 -175.06 -0.42 -11.43 16 11 C 0.07 0.96 5.33 -4.04 -0.02 0.94 16 12 C 0.43 6.09 3.29 37.16 0.12 6.21 16 13 F -0.17 -3.01 16.23 2.25 0.04 -2.97 16 14 F -0.19 -2.39 17.32 2.25 0.04 -2.35 16 15 F -0.18 -2.76 14.30 2.25 0.03 -2.73 16 16 C 0.50 9.06 7.41 -10.99 -0.08 8.97 16 17 O -0.51 -11.50 16.01 5.55 0.09 -11.41 16 18 C 0.09 1.18 4.32 -5.20 -0.02 1.15 16 19 N -0.60 -7.48 2.28 -180.96 -0.41 -7.90 16 20 C 0.11 0.97 6.60 -3.90 -0.03 0.95 16 21 C -0.16 -1.48 6.30 -27.64 -0.17 -1.65 16 22 C 0.53 6.29 7.75 -11.03 -0.09 6.21 16 23 O -0.51 -7.36 17.93 5.60 0.10 -7.26 16 24 N -0.67 -8.26 5.18 -16.02 -0.08 -8.34 16 25 C 0.71 10.37 8.22 -87.75 -0.72 9.65 16 26 O -0.55 -9.83 16.57 5.33 0.09 -9.75 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 1.03 7.26 -51.93 -0.38 0.65 16 29 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 30 H 0.13 1.68 8.07 -51.93 -0.42 1.27 16 31 H 0.11 0.98 6.44 -51.93 -0.33 0.64 16 32 H 0.11 0.93 7.32 -51.93 -0.38 0.55 16 33 H 0.13 1.72 4.61 -51.93 -0.24 1.48 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.42 4.62 8.86 -40.82 -0.36 4.26 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -35.63 339.88 -4.87 -40.50 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.73 Total: 1.84 kcal Atomic # 6 Polarization: 27.25 SS G_CDS: -1.46 Total: 25.79 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.17 Total: -52.18 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.28 Total: -28.41 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.11 Total: -8.05 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.63 -4.87 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331121089.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.093 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds