Wall clock time and date at job start Tue Mar 31 2020 19:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99538 * 2 1 4 4 H 1.48499 * 109.46966 * 270.00097 * 3 2 1 5 5 H 1.48493 * 109.47124 * 30.00489 * 3 2 1 6 6 H 1.48501 * 109.46391 * 150.00218 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00487 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99784 * 269.99986 * 10 9 7 12 12 C 1.52999 * 109.46969 * 269.99779 * 11 10 9 13 13 F 1.39902 * 109.47175 * 59.99740 * 12 11 10 14 14 F 1.39899 * 109.47357 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.47072 * 300.00097 * 12 11 10 16 16 C 1.34777 * 120.00453 * 89.99405 * 10 9 7 17 17 O 1.21287 * 119.99762 * 0.02562 * 16 10 9 18 18 C 1.50695 * 120.00304 * 180.02562 * 16 10 9 19 19 N 1.46497 * 109.47265 * 180.02562 * 18 16 10 20 20 C 1.46415 * 119.53437 * 269.97763 * 19 18 16 21 21 C 1.53364 * 109.41467 * 144.00620 * 20 19 18 22 22 C 1.50807 * 109.00705 * 47.02132 * 21 20 19 23 23 O 1.21233 * 120.01980 * 145.62560 * 22 21 20 24 24 N 1.34569 * 119.96446 * 325.34354 * 22 21 20 25 25 C 1.34286 * 119.53702 * 89.99804 * 19 18 16 26 26 O 1.21539 * 119.20750 * 5.69273 * 25 19 18 27 27 H 0.97006 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47300 * 59.99861 * 9 7 2 29 29 H 1.09002 * 109.46955 * 299.99601 * 9 7 2 30 30 H 1.08998 * 109.46996 * 29.99432 * 11 10 9 31 31 H 1.08996 * 109.47077 * 149.99875 * 11 10 9 32 32 H 1.09006 * 109.47300 * 59.99935 * 18 16 10 33 33 H 1.09000 * 109.47535 * 300.00138 * 18 16 10 34 34 H 1.08997 * 109.46076 * 264.18235 * 20 19 18 35 35 H 1.09000 * 109.46310 * 24.15290 * 20 19 18 36 36 H 1.08997 * 109.71839 * 287.09225 * 21 20 19 37 37 H 1.08996 * 109.49190 * 166.80558 * 21 20 19 38 38 H 0.96998 * 119.50582 * 184.71384 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1688 -1.2701 12 6 1.7496 -5.2998 -1.7130 13 9 0.4541 -4.7992 -1.8809 14 9 2.2047 -5.8306 -2.9247 15 9 1.7390 -6.3034 -0.7384 16 6 2.6402 -4.1253 1.1658 17 8 2.2451 -3.6651 2.2161 18 6 3.6199 -5.2703 1.1660 19 7 3.9357 -5.6426 2.5472 20 6 5.0596 -4.9981 3.2294 21 6 4.7108 -4.7984 4.7095 22 6 4.1328 -6.0800 5.2551 23 8 4.3500 -6.4027 6.4034 24 7 3.3712 -6.8623 4.4685 25 6 3.1907 -6.5703 3.1697 26 8 2.3327 -7.1604 2.5429 27 1 -0.4851 0.8401 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.6882 -3.3868 -2.0294 31 1 3.6893 -4.5588 -1.1392 32 1 4.5328 -4.9676 0.6531 33 1 3.1804 -6.1248 0.6513 34 1 5.9456 -5.6271 3.1433 35 1 5.2560 -4.0293 2.7701 36 1 3.9790 -3.9969 4.8099 37 1 5.6130 -4.5406 5.2641 38 1 2.9465 -7.6490 4.8449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331121089.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:38 Heat of formation + Delta-G solvation = -263.335168 kcal Electronic energy + Delta-G solvation = -30979.762125 eV Core-core repulsion = 26021.054913 eV Total energy + Delta-G solvation = -4958.707212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.04615 -48.58691 -48.52528 -42.74013 -40.85383 -39.89090 -37.39362 -36.84266 -35.75387 -34.81924 -32.54271 -30.95535 -29.74954 -27.98947 -26.02249 -25.01257 -24.54937 -23.88250 -20.98215 -19.97573 -19.50423 -19.49137 -19.38325 -19.03731 -18.70794 -18.40448 -17.81370 -17.40004 -17.26911 -16.50681 -16.11713 -15.88593 -15.73422 -15.62187 -15.47395 -15.38602 -15.21962 -14.95719 -14.74284 -14.67213 -14.49528 -14.33573 -14.20256 -13.63557 -13.58755 -13.43954 -13.13985 -12.91596 -12.80565 -12.53430 -12.52835 -12.18392 -11.84094 -11.73129 -11.40548 -11.38317 -11.09903 -10.60943 -9.90987 -9.76153 -8.19387 -6.33967 0.61830 1.21861 1.43333 1.45358 1.46661 1.55476 1.87331 1.96734 2.00492 2.26704 2.43910 2.92369 3.06734 3.12016 3.21771 3.37970 3.57915 3.64389 3.92254 4.07512 4.12626 4.35799 4.37951 4.47943 4.57547 4.84696 4.89136 4.95215 5.09627 5.23242 5.40407 5.44007 5.76284 6.04250 6.27095 6.39542 6.44474 6.76117 7.01496 7.18741 7.38504 8.89047 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.004834 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.940882 B = 5790.559971 C = 7927.703541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.260 3.740 10 N -0.600 5.600 11 C 0.070 3.930 12 C 0.426 3.574 13 F -0.198 7.198 14 F -0.174 7.174 15 F -0.186 7.186 16 C 0.488 3.512 17 O -0.566 6.566 18 C 0.100 3.900 19 N -0.595 5.595 20 C 0.107 3.893 21 C -0.155 4.155 22 C 0.530 3.470 23 O -0.537 6.537 24 N -0.671 5.671 25 C 0.710 3.290 26 O -0.591 6.591 27 H 0.265 0.735 28 H 0.026 0.974 29 H -0.006 1.006 30 H 0.142 0.858 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.158 0.842 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.893 -10.972 -1.292 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.140 3.860 10 N -0.331 5.331 11 C -0.056 4.056 12 C 0.371 3.629 13 F -0.180 7.180 14 F -0.155 7.155 15 F -0.167 7.167 16 C 0.276 3.724 17 O -0.444 6.444 18 C -0.027 4.027 19 N -0.330 5.330 20 C -0.014 4.014 21 C -0.195 4.195 22 C 0.320 3.680 23 O -0.412 6.412 24 N -0.339 5.339 25 C 0.412 3.588 26 O -0.469 6.469 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.012 0.988 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.175 0.825 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 15.283 -10.933 -0.519 18.798 hybrid contribution -1.224 0.426 0.263 1.323 sum 14.058 -10.507 -0.256 17.553 Atomic orbital electron populations 1.70090 1.07960 1.28098 1.51111 1.25899 0.95606 1.03280 0.94551 0.85376 0.78436 0.78103 0.78634 1.19081 1.21810 1.18688 1.21687 0.93860 0.90887 1.50971 0.91007 1.18882 0.87636 0.83462 0.96058 1.48058 1.45808 1.34352 1.04910 1.23079 0.98009 0.94929 0.89568 1.21850 0.81319 0.84614 0.75166 1.93187 1.42046 1.87373 1.95355 1.93187 1.88525 1.87846 1.45970 1.93151 1.96397 1.64239 1.62944 1.21904 0.82815 0.84412 0.83237 1.90670 1.58986 1.62438 1.32257 1.21922 1.00903 0.96676 0.83182 1.46742 1.32199 1.39766 1.14326 1.22128 0.87828 1.01520 0.89930 1.22404 1.05754 0.93403 0.97891 1.21531 0.75747 0.85763 0.84981 1.90762 1.58217 1.73434 1.18763 1.44220 1.49829 1.30450 1.09377 1.15755 0.81113 0.80588 0.81374 1.90994 1.35906 1.54983 1.64970 0.92636 0.95587 0.98758 0.84049 0.81369 0.81098 0.85641 0.86200 0.86226 0.87638 0.82471 0.73226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.54 -27.52 9.39 25.60 0.24 -27.28 16 8 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.26 12.91 4.96 85.64 0.42 13.33 16 10 N -0.60 -21.79 2.37 -826.17 -1.96 -23.75 16 11 C 0.07 1.67 5.33 86.38 0.46 2.14 16 12 C 0.43 11.59 3.29 71.98 0.24 11.83 16 13 F -0.20 -6.98 16.23 44.97 0.73 -6.25 16 14 F -0.17 -4.00 17.32 44.97 0.78 -3.22 16 15 F -0.19 -5.49 14.30 44.97 0.64 -4.84 16 16 C 0.49 17.31 7.41 87.66 0.65 17.96 16 17 O -0.57 -25.81 16.01 -3.05 -0.05 -25.86 16 18 C 0.10 2.24 4.32 85.63 0.37 2.61 16 19 N -0.60 -13.36 2.28 -844.98 -1.93 -15.29 16 20 C 0.11 1.42 6.60 86.52 0.57 1.99 16 21 C -0.15 -2.50 6.30 30.00 0.19 -2.31 16 22 C 0.53 12.00 7.75 87.72 0.68 12.68 16 23 O -0.54 -15.06 17.93 -2.88 -0.05 -15.11 16 24 N -0.67 -16.12 5.18 -441.64 -2.29 -18.41 16 25 C 0.71 20.03 8.22 179.34 1.47 21.50 16 26 O -0.59 -21.30 16.57 -3.84 -0.06 -21.37 16 27 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 28 H 0.03 1.35 7.26 -2.39 -0.02 1.34 16 29 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 30 H 0.14 3.20 8.07 -2.39 -0.02 3.18 16 31 H 0.17 2.04 6.44 -2.39 -0.02 2.03 16 32 H 0.17 1.77 7.32 -2.38 -0.02 1.75 16 33 H 0.13 3.03 4.61 -2.39 -0.01 3.02 16 34 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 1.32 8.01 -2.39 -0.02 1.30 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.43 9.40 8.86 -92.71 -0.82 8.58 16 Total: -1.00 -83.34 339.88 4.21 -79.12 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.33 Total: 10.53 kcal Atomic # 6 Polarization: 49.44 SS G_CDS: 5.76 Total: 55.20 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.89 Total: -111.67 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -0.16 Total: -62.34 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.15 Total: -14.31 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -83.34 4.21 -79.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331121089.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.211 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds