Wall clock time and date at job start Tue Mar 31 2020 19:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34957 * 125.97696 * 124.71669 * 10 9 7 12 12 C 1.35245 * 107.86843 * 179.83761 * 11 10 9 13 13 C 1.40440 * 107.85969 * 0.42548 * 12 11 10 14 14 N 1.39973 * 125.97705 * 179.69963 * 13 12 11 15 15 S 1.65602 * 120.00293 * 180.02562 * 14 13 12 16 16 O 1.42094 * 106.40435 * 178.54403 * 15 14 13 17 17 O 1.42108 * 106.39763 * 311.46067 * 15 14 13 18 18 C 1.76194 * 107.21959 * 64.99991 * 15 14 13 19 19 C 1.34568 * 126.58348 * 269.69292 * 18 15 14 20 20 N 1.34002 * 108.03383 * 179.86790 * 19 18 15 21 21 C 1.30910 * 109.30098 * 0.49061 * 20 19 18 22 22 N 1.34819 * 108.60658 * 359.60848 * 21 20 19 23 23 C 1.47005 * 111.17627 * 180.22439 * 22 21 20 24 24 C 1.54388 * 105.53671 * 342.90390 * 23 22 21 25 25 C 1.51566 * 141.44651 * 179.54623 * 21 20 19 26 26 N 1.31227 * 108.04378 * 359.73810 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08007 * 126.06605 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.07198 * 180.12480 * 12 11 10 32 32 H 0.97004 * 120.00420 * 0.02562 * 14 13 12 33 33 H 1.08005 * 125.98351 * 0.03726 * 19 18 15 34 34 H 1.09003 * 110.23682 * 101.91097 * 23 22 21 35 35 H 1.09003 * 110.24021 * 223.87481 * 23 22 21 36 36 H 1.09004 * 110.95675 * 267.59376 * 24 23 22 37 37 H 1.08992 * 111.00869 * 143.84917 * 24 23 22 38 38 H 1.08999 * 110.47463 * 315.29822 * 25 21 20 39 39 H 1.08996 * 110.48184 * 77.79378 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8468 -3.1127 -0.9209 12 6 5.0539 -4.4045 -0.5778 13 6 4.2968 -4.6707 0.5747 14 7 4.2279 -5.8957 1.2484 15 16 3.2825 -6.0454 2.5998 16 8 3.3983 -7.3970 3.0228 17 8 3.5984 -4.9399 3.4349 18 6 1.6095 -5.8243 2.0931 19 6 0.9327 -4.6621 2.0462 20 7 -0.3060 -4.9210 1.6056 21 6 -0.4276 -6.2059 1.3864 22 7 0.7450 -6.8046 1.6763 23 6 0.6728 -8.2543 1.4440 24 6 -0.8331 -8.5878 1.3763 25 6 -1.4345 -7.2389 0.9214 26 7 3.6646 -3.5704 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2842 -2.6012 -1.7656 31 1 5.6852 -5.1078 -1.1004 32 1 4.7339 -6.6570 0.9239 33 1 1.3209 -3.6904 2.3138 34 1 1.1581 -8.5099 0.5021 35 1 1.1414 -8.7921 2.2683 36 1 -1.2137 -8.8736 2.3570 37 1 -1.0277 -9.3691 0.6418 38 1 -2.4002 -7.0718 1.3984 39 1 -1.5362 -7.2110 -0.1635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333101423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:25 Heat of formation + Delta-G solvation = 91.512263 kcal Electronic energy + Delta-G solvation = -27484.227918 eV Core-core repulsion = 23557.810408 eV Total energy + Delta-G solvation = -3926.417510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34325 -40.62369 -37.21778 -36.39738 -35.81050 -35.32013 -33.17203 -31.90494 -31.10456 -29.57896 -28.75884 -27.39113 -27.12629 -22.87879 -22.32466 -21.90092 -20.99465 -20.60081 -20.12851 -18.83221 -17.70498 -17.43902 -16.93573 -16.75976 -16.61762 -15.53179 -15.16004 -14.69682 -14.61719 -14.10935 -13.96588 -13.89657 -13.80124 -13.47204 -13.28801 -13.06280 -12.50727 -12.41649 -12.34054 -12.11599 -12.04235 -11.87810 -11.82555 -11.53223 -11.38094 -11.36514 -10.91472 -10.69591 -10.17687 -9.99966 -9.71610 -9.58467 -9.50693 -8.71369 -8.59804 -8.44979 -7.75806 -6.16248 -4.20208 0.36939 1.62847 2.55441 2.58145 2.74327 3.19389 3.21927 3.23102 3.25041 3.29331 3.51037 3.74283 3.82705 4.20664 4.27241 4.42748 4.50717 4.58919 4.89481 5.09313 5.13400 5.20229 5.26998 5.29476 5.46787 5.51860 5.63481 5.87719 5.91257 6.02043 6.10238 6.18355 6.36017 6.55691 6.85233 6.91542 7.07549 7.19971 7.33572 7.69276 8.14791 8.28171 8.40233 8.93718 9.36808 10.95393 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004734 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.407974 B = 5913.231071 C = 7331.524861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.090 0.910 9 C 0.229 3.771 10 N -0.310 5.310 11 C 0.069 3.931 12 C -0.302 4.302 13 C 0.276 3.724 14 N -1.014 6.014 15 S 2.725 3.275 16 O -0.966 6.966 17 O -0.917 6.917 18 C -0.592 4.592 19 C 0.157 3.843 20 N -0.475 5.475 21 C 0.229 3.771 22 N -0.438 5.438 23 C 0.090 3.910 24 C -0.128 4.128 25 C -0.046 4.046 26 N -0.292 5.292 27 H 0.267 0.733 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.172 0.828 31 H 0.142 0.858 32 H 0.430 0.570 33 H 0.200 0.800 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -17.616 -1.225 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.697 3.303 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.108 0.892 9 C 0.111 3.889 10 N -0.090 5.090 11 C -0.081 4.081 12 C -0.336 4.336 13 C 0.020 3.980 14 N -0.768 5.768 15 S 2.811 3.189 16 O -0.956 6.956 17 O -0.906 6.906 18 C -0.786 4.786 19 C 0.000 4.000 20 N -0.194 5.194 21 C -0.036 4.036 22 N -0.122 5.122 23 C -0.031 4.031 24 C -0.166 4.166 25 C -0.085 4.085 26 N -0.123 5.123 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.190 0.810 31 H 0.159 0.841 32 H 0.266 0.734 33 H 0.217 0.783 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.852 -16.456 0.467 16.708 hybrid contribution 1.314 -0.095 -1.289 1.843 sum 4.166 -16.551 -0.822 17.087 Atomic orbital electron populations 1.69892 1.06041 1.27127 1.48513 1.24803 0.94804 0.98573 0.94280 0.86966 0.80152 0.84171 0.79042 1.19647 1.19104 1.20721 1.21082 0.87439 0.95933 1.53187 0.89228 1.20161 0.97839 0.72482 0.98448 1.48662 1.32273 1.10297 1.17782 1.22429 0.95357 0.94187 0.96170 1.20837 1.13155 0.97471 1.02093 1.18670 0.99095 0.86080 0.94198 1.52604 1.60798 1.15427 1.47935 1.01158 0.72130 0.73282 0.72281 1.93554 1.86652 1.36026 1.79346 1.93670 1.81685 1.53494 1.61793 1.32869 1.20349 0.95096 1.30322 1.22772 0.87894 0.97189 0.92120 1.70197 1.19864 1.10975 1.18357 1.24955 0.88969 0.90478 0.99201 1.45942 1.11027 1.07701 1.47515 1.22623 0.99181 0.77177 1.04085 1.22766 0.92326 0.97436 1.04069 1.20768 0.96597 0.88485 1.02691 1.77481 1.24054 0.95082 1.15665 0.92238 0.92829 0.94076 0.81039 0.84068 0.73420 0.78334 0.88915 0.87860 0.89141 0.87742 0.87885 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.27 -5.64 6.54 56.52 0.37 -5.27 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.86 9.79 -34.44 -0.34 -15.20 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.23 5.25 5.33 -5.20 -0.03 5.22 16 10 N -0.31 -6.60 3.67 -62.56 -0.23 -6.83 16 11 C 0.07 1.17 11.43 -17.24 -0.20 0.97 16 12 C -0.30 -4.79 10.83 -39.82 -0.43 -5.22 16 13 C 0.28 5.04 7.72 -154.55 -1.19 3.85 16 14 N -1.01 -15.19 5.91 31.39 0.19 -15.01 16 15 S 2.72 46.31 5.66 -107.50 -0.61 45.70 16 16 O -0.97 -15.82 18.02 -57.17 -1.03 -16.85 16 17 O -0.92 -18.76 17.08 -57.17 -0.98 -19.74 16 18 C -0.59 -10.88 7.21 -16.45 -0.12 -11.00 16 19 C 0.16 3.38 11.14 -17.90 -0.20 3.18 16 20 N -0.48 -10.18 11.26 -10.56 -0.12 -10.30 16 21 C 0.23 3.81 8.58 -154.85 -1.33 2.48 16 22 N -0.44 -6.82 3.61 -111.32 -0.40 -7.22 16 23 C 0.09 0.91 7.78 -3.04 -0.02 0.88 16 24 C -0.13 -0.88 7.17 -25.20 -0.18 -1.06 16 25 C -0.05 -0.46 6.86 -26.65 -0.18 -0.65 16 26 N -0.29 -6.43 10.91 31.41 0.34 -6.08 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.05 1.11 7.12 -51.93 -0.37 0.74 16 29 H 0.04 0.94 7.57 -51.93 -0.39 0.55 16 30 H 0.17 2.18 8.06 -52.48 -0.42 1.75 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.43 4.60 8.96 -34.47 -0.31 4.29 16 33 H 0.20 4.63 8.00 -52.48 -0.42 4.21 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -38.36 350.57 -10.23 -48.59 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.46 Total: 7.08 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -4.32 Total: -14.40 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: 0.55 Total: -71.02 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -2.01 Total: -36.60 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.61 Total: 45.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.36 -10.23 -48.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333101423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.099 kcal (2) G-P(sol) polarization free energy of solvation -38.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds