Wall clock time and date at job start Tue Mar 31 2020 19:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34957 * 125.97696 * 124.71669 * 10 9 7 12 12 C 1.35245 * 107.86843 * 179.83761 * 11 10 9 13 13 C 1.40440 * 107.85969 * 0.42548 * 12 11 10 14 14 N 1.39973 * 125.97705 * 179.69963 * 13 12 11 15 15 S 1.65602 * 120.00293 * 180.02562 * 14 13 12 16 16 O 1.42094 * 106.40435 * 178.54403 * 15 14 13 17 17 O 1.42108 * 106.39763 * 311.46067 * 15 14 13 18 18 C 1.76194 * 107.21959 * 64.99991 * 15 14 13 19 19 C 1.34568 * 126.58348 * 269.69292 * 18 15 14 20 20 N 1.34002 * 108.03383 * 179.86790 * 19 18 15 21 21 C 1.30910 * 109.30098 * 0.49061 * 20 19 18 22 22 N 1.34819 * 108.60658 * 359.60848 * 21 20 19 23 23 C 1.47005 * 111.17627 * 180.22439 * 22 21 20 24 24 C 1.54388 * 105.53671 * 342.90390 * 23 22 21 25 25 C 1.51566 * 141.44651 * 179.54623 * 21 20 19 26 26 N 1.31227 * 108.04378 * 359.73810 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08007 * 126.06605 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.07198 * 180.12480 * 12 11 10 32 32 H 0.97004 * 120.00420 * 0.02562 * 14 13 12 33 33 H 1.08005 * 125.98351 * 0.03726 * 19 18 15 34 34 H 1.09003 * 110.23682 * 101.91097 * 23 22 21 35 35 H 1.09003 * 110.24021 * 223.87481 * 23 22 21 36 36 H 1.09004 * 110.95675 * 267.59376 * 24 23 22 37 37 H 1.08992 * 111.00869 * 143.84917 * 24 23 22 38 38 H 1.08999 * 110.47463 * 315.29822 * 25 21 20 39 39 H 1.08996 * 110.48184 * 77.79378 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8468 -3.1127 -0.9209 12 6 5.0539 -4.4045 -0.5778 13 6 4.2968 -4.6707 0.5747 14 7 4.2279 -5.8957 1.2484 15 16 3.2825 -6.0454 2.5998 16 8 3.3983 -7.3970 3.0228 17 8 3.5984 -4.9399 3.4349 18 6 1.6095 -5.8243 2.0931 19 6 0.9327 -4.6621 2.0462 20 7 -0.3060 -4.9210 1.6056 21 6 -0.4276 -6.2059 1.3864 22 7 0.7450 -6.8046 1.6763 23 6 0.6728 -8.2543 1.4440 24 6 -0.8331 -8.5878 1.3763 25 6 -1.4345 -7.2389 0.9214 26 7 3.6646 -3.5704 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2842 -2.6012 -1.7656 31 1 5.6852 -5.1078 -1.1004 32 1 4.7339 -6.6570 0.9239 33 1 1.3209 -3.6904 2.3138 34 1 1.1581 -8.5099 0.5021 35 1 1.1414 -8.7921 2.2683 36 1 -1.2137 -8.8736 2.3570 37 1 -1.0277 -9.3691 0.6418 38 1 -2.4002 -7.0718 1.3984 39 1 -1.5362 -7.2110 -0.1635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333101423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:24 Heat of formation + Delta-G solvation = 60.664470 kcal Electronic energy + Delta-G solvation = -27485.565579 eV Core-core repulsion = 23557.810408 eV Total energy + Delta-G solvation = -3927.755171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.62926 -42.04593 -38.64386 -37.42991 -37.29063 -36.76309 -35.12252 -33.10623 -32.87873 -30.98949 -29.94426 -28.90804 -28.40629 -24.68067 -23.37461 -23.14619 -22.36352 -22.12036 -21.34874 -20.19650 -19.13558 -18.95494 -18.65666 -18.18989 -17.62200 -17.10852 -16.59284 -16.28273 -16.09620 -15.54622 -15.27525 -15.08770 -14.89293 -14.79896 -14.51968 -14.34007 -14.28116 -13.99936 -13.56345 -13.44648 -13.35363 -13.28901 -13.10976 -12.86900 -12.70321 -12.56886 -12.36451 -12.06067 -11.87849 -11.72593 -11.37260 -11.18595 -10.89916 -10.83434 -9.94040 -9.89599 -9.21004 -8.30335 -6.40992 -1.02605 0.25015 1.15627 1.29288 1.37201 1.41114 1.47927 1.51713 1.78908 1.88832 2.08696 2.31690 2.43249 2.76904 3.01097 3.14563 3.41052 3.58789 3.66589 3.89054 4.03789 4.22013 4.27958 4.40276 4.43583 4.47209 4.70912 4.72458 4.79896 4.80965 4.88321 4.96656 4.97576 5.05962 5.27298 5.48411 5.67230 5.82507 5.90301 6.04523 6.42772 6.67169 6.76462 6.91491 7.21208 8.86098 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004734 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.407974 B = 5913.231071 C = 7331.524861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.224 1.224 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.028 0.972 9 C 0.237 3.763 10 N -0.341 5.341 11 C 0.071 3.929 12 C -0.289 4.289 13 C 0.270 3.730 14 N -0.995 5.995 15 S 2.747 3.253 16 O -0.955 6.955 17 O -0.957 6.957 18 C -0.587 4.587 19 C 0.119 3.881 20 N -0.539 5.539 21 C 0.222 3.778 22 N -0.434 5.434 23 C 0.070 3.930 24 C -0.107 4.107 25 C -0.047 4.047 26 N -0.352 5.352 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.188 0.812 32 H 0.450 0.550 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -20.056 -3.269 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.147 1.147 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.047 0.953 9 C 0.117 3.883 10 N -0.123 5.123 11 C -0.077 4.077 12 C -0.322 4.322 13 C 0.013 3.987 14 N -0.753 5.753 15 S 2.832 3.168 16 O -0.945 6.945 17 O -0.946 6.946 18 C -0.783 4.783 19 C -0.038 4.038 20 N -0.258 5.258 21 C -0.044 4.044 22 N -0.116 5.116 23 C -0.048 4.048 24 C -0.145 4.145 25 C -0.086 4.086 26 N -0.182 5.182 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.234 0.766 31 H 0.205 0.795 32 H 0.292 0.708 33 H 0.175 0.825 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.224 -18.995 -1.599 19.765 hybrid contribution 0.558 0.436 -0.660 0.968 sum 5.782 -18.559 -2.259 19.570 Atomic orbital electron populations 1.70100 1.08616 1.28394 1.50732 1.25902 0.95667 1.03411 0.93501 0.85690 0.80124 0.77604 0.79316 1.19731 1.14659 1.20547 1.21226 0.90460 0.93765 1.52619 0.95314 1.19923 0.94211 0.74481 0.99673 1.48487 1.34421 1.09860 1.19498 1.23314 0.93662 0.94685 0.96042 1.21369 1.12302 0.97832 1.00672 1.19070 0.98625 0.86033 0.94982 1.52284 1.60501 1.15355 1.47178 1.00464 0.71557 0.72596 0.72173 1.93550 1.86428 1.35062 1.79419 1.93621 1.82188 1.55200 1.63617 1.32851 1.21027 0.94924 1.29497 1.22220 0.89254 0.97067 0.95233 1.70013 1.20465 1.14688 1.20654 1.26089 0.91050 0.89679 0.97589 1.46379 1.09843 1.09632 1.45764 1.23297 1.02240 0.73555 1.05729 1.22907 0.89047 0.96321 1.06210 1.21192 0.95669 0.87963 1.03776 1.77437 1.26309 0.96806 1.17693 0.92230 0.89368 0.94207 0.76579 0.79470 0.70827 0.82461 0.86355 0.86927 0.87867 0.83144 0.86542 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.01 0.81 5.47 84.65 0.46 1.28 16 3 Si 0.95 41.92 27.47 68.60 1.88 43.81 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.22 -8.30 6.54 99.48 0.65 -7.65 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -31.79 9.79 25.60 0.25 -31.54 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.24 10.91 5.33 85.63 0.46 11.37 16 10 N -0.34 -14.63 3.67 -351.85 -1.29 -15.92 16 11 C 0.07 2.22 11.43 83.52 0.95 3.18 16 12 C -0.29 -8.30 10.83 22.12 0.24 -8.06 16 13 C 0.27 9.76 7.72 133.39 1.03 10.79 16 14 N -0.99 -28.90 5.91 -54.61 -0.32 -29.23 16 15 S 2.75 95.22 5.66 -56.49 -0.32 94.90 16 16 O -0.95 -30.16 18.02 -128.00 -2.31 -32.46 16 17 O -0.96 -41.50 17.08 -128.00 -2.19 -43.69 16 18 C -0.59 -22.83 7.21 83.01 0.60 -22.23 16 19 C 0.12 5.74 11.14 83.52 0.93 6.67 16 20 N -0.54 -25.38 11.26 -187.32 -2.11 -27.49 16 21 C 0.22 7.61 8.58 138.36 1.19 8.80 16 22 N -0.43 -13.52 3.61 -506.11 -1.83 -15.35 16 23 C 0.07 1.20 7.78 86.75 0.67 1.88 16 24 C -0.11 -1.03 7.17 31.59 0.23 -0.80 16 25 C -0.05 -0.86 6.86 30.65 0.21 -0.65 16 26 N -0.35 -16.15 10.91 -54.55 -0.60 -16.74 16 27 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 28 H 0.09 3.43 7.12 -2.39 -0.02 3.42 16 29 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 30 H 0.22 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.45 8.49 8.96 -96.74 -0.87 7.63 16 33 H 0.16 8.63 8.00 -2.91 -0.02 8.60 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -96.09 350.57 -1.37 -97.45 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.18 Total: 23.86 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 7.22 Total: -19.32 kcal Atomic # 7 Polarization: -158.69 SS G_CDS: -5.84 Total: -164.53 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -4.49 Total: -76.15 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.81 kcal Atomic # 16 Polarization: 95.22 SS G_CDS: -0.32 Total: 94.90 kcal Total: -96.09 -1.37 -97.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333101423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.118 kcal (2) G-P(sol) polarization free energy of solvation -96.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds