Wall clock time and date at job start Tue Mar 31 2020 20:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99785 * 2 1 4 4 O 1.21471 * 120.00249 * 0.02562 * 3 2 1 5 5 C 1.47755 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.39673 * 120.04512 * 0.02562 * 5 3 2 7 7 C 1.38565 * 120.09329 * 180.02562 * 6 5 3 8 8 O 1.35922 * 119.90650 * 179.72333 * 7 6 5 9 9 C 1.42900 * 117.00356 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47318 * 180.02562 * 9 8 7 11 11 O 1.21294 * 119.99679 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99993 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00295 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99363 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00296 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47140 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47305 * 119.99933 * 17 15 13 20 20 H 1.48504 * 109.47096 * 239.99777 * 17 15 13 21 21 C 1.38564 * 120.18836 * 359.97438 * 7 6 5 22 22 C 1.39663 * 120.09647 * 359.97438 * 21 7 6 23 23 C 1.47755 * 120.05071 * 180.02562 * 22 21 7 24 24 O 1.21471 * 120.00155 * 179.97438 * 23 22 21 25 25 O 1.34703 * 119.99913 * 359.97438 * 23 22 21 26 26 C 1.45201 * 117.00410 * 179.97438 * 25 23 22 27 27 C 1.39356 * 120.05108 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.46907 * 300.00197 * 1 2 3 29 29 H 1.08999 * 109.47521 * 59.99717 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.95423 * 359.97438 * 6 5 3 32 32 H 1.09007 * 109.46973 * 300.00053 * 9 8 7 33 33 H 1.08994 * 109.46887 * 59.99488 * 9 8 7 34 34 H 0.97007 * 120.00132 * 0.02562 * 12 10 9 35 35 H 0.97004 * 119.99389 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.94707 * 180.02562 * 21 7 6 37 37 H 1.09000 * 109.46505 * 60.00282 * 26 25 23 38 38 H 1.08992 * 109.47360 * 180.02562 * 26 25 23 39 39 H 1.09004 * 109.46841 * 300.00692 * 26 25 23 40 40 H 1.08000 * 120.09453 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2777 -0.0006 6 6 4.3007 0.1069 -0.0017 7 6 5.6845 0.1784 -0.0017 8 8 6.4221 -0.9634 0.0030 9 6 7.8436 -0.8175 0.0021 10 6 8.4884 -2.1797 0.0071 11 8 7.7983 -3.1772 0.0114 12 7 9.8316 -2.2894 0.0067 13 6 10.4182 -3.5285 0.0117 14 1 9.8038 -4.4167 0.0155 15 6 11.8030 -3.6416 0.0118 16 7 12.5506 -2.5608 0.0076 17 14 12.6023 -5.3300 0.0179 18 1 11.5487 -6.3764 0.0227 19 1 13.4465 -5.4825 -1.1942 20 1 13.4471 -5.4733 1.2308 21 6 6.3186 1.4104 -0.0011 22 6 5.5648 2.5861 -0.0011 23 6 6.2420 3.8993 -0.0011 24 8 5.5854 4.9213 -0.0016 25 8 7.5875 3.9632 -0.0006 26 6 8.1846 5.2867 -0.0012 27 6 4.1728 2.5188 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.8105 -0.8554 -0.0017 32 1 8.1524 -0.2730 -0.8903 33 1 8.1527 -0.2656 0.8897 34 1 10.3834 -1.4916 0.0036 35 1 13.5174 -2.6398 0.0073 36 1 7.3974 1.4615 -0.0015 37 1 7.8653 5.8297 0.8883 38 1 9.2707 5.1953 -0.0012 39 1 7.8659 5.8287 -0.8917 40 1 3.5868 3.4261 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342788577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:28 Heat of formation + Delta-G solvation = -208.216198 kcal Electronic energy + Delta-G solvation = -27839.695538 eV Core-core repulsion = 23392.942454 eV Total energy + Delta-G solvation = -4446.753085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18156 -40.53891 -39.91562 -38.33282 -37.28458 -36.69111 -36.45599 -34.07514 -32.41043 -31.44663 -30.64223 -28.35721 -28.28429 -27.71372 -25.06692 -24.38197 -23.99022 -21.44988 -21.02998 -19.64994 -18.99216 -18.17712 -17.67534 -17.57514 -16.70658 -16.62665 -16.57378 -16.48366 -16.30990 -16.00057 -15.95998 -15.19833 -14.57659 -14.17785 -14.00909 -13.97985 -13.74914 -13.56665 -13.40754 -13.30622 -12.58075 -12.51449 -12.36366 -12.35524 -12.05606 -11.69670 -11.66078 -11.24669 -11.09606 -11.07768 -11.02385 -10.97893 -10.72919 -10.42724 -10.34915 -9.66880 -9.57053 -8.58562 -8.54579 -8.13497 -6.55354 -3.97144 0.10459 0.62861 1.98566 2.15479 2.44058 2.51411 2.93778 3.08233 3.21521 3.29391 3.41983 3.66834 4.09007 4.19684 4.32131 4.70439 4.74260 4.79855 4.81021 4.83807 4.85528 4.90253 4.91153 4.94203 5.07760 5.20328 5.25903 5.26825 5.34601 5.52860 5.71302 5.80120 5.83697 5.98385 6.00903 6.07085 6.14314 7.21751 7.39896 7.42767 7.43588 7.88935 8.42740 9.02534 9.33544 9.83304 10.61880 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002729 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.455539 B =10256.214684 C =12881.916655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.516 3.484 4 O -0.500 6.500 5 C -0.101 4.101 6 C -0.058 4.058 7 C 0.120 3.880 8 O -0.274 6.274 9 C 0.046 3.954 10 C 0.439 3.561 11 O -0.573 6.573 12 N -0.552 5.552 13 C -0.302 4.302 14 H 0.107 0.893 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.124 4.124 22 C -0.098 4.098 23 C 0.513 3.487 24 O -0.500 6.500 25 O -0.351 6.351 26 C 0.037 3.963 27 C -0.034 4.034 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.394 0.606 35 H 0.273 0.727 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 12.806 -0.043 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.361 3.639 4 O -0.389 6.389 5 C -0.102 4.102 6 C -0.077 4.077 7 C 0.073 3.927 8 O -0.186 6.186 9 C -0.033 4.033 10 C 0.224 3.776 11 O -0.457 6.457 12 N -0.190 5.190 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.143 4.143 22 C -0.099 4.099 23 C 0.358 3.642 24 O -0.389 6.389 25 O -0.267 6.267 26 C -0.057 4.057 27 C -0.053 4.053 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.175 0.825 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.272 12.552 -0.039 19.006 hybrid contribution 0.935 0.223 -0.001 0.961 sum -13.337 12.775 -0.040 18.468 Atomic orbital electron populations 1.23334 0.75523 1.04087 1.02717 1.86572 1.23871 1.32101 1.84046 1.20897 0.88570 0.81685 0.72785 1.90859 1.66515 1.35981 1.45541 1.18591 0.89373 0.93440 1.08802 1.20993 0.90800 0.99484 0.96453 1.18856 0.91378 0.85820 0.96620 1.86277 1.18593 1.26328 1.87374 1.22658 0.78301 0.99728 1.02616 1.19211 0.83475 0.88773 0.86148 1.90583 1.62244 1.37813 1.55022 1.41700 1.03703 1.09715 1.63845 1.19774 0.89989 0.85248 1.48049 0.87549 1.25303 0.96165 0.99402 0.96843 1.69616 1.06106 1.28305 1.49751 0.85749 0.79070 0.81428 0.77829 1.19055 1.20604 1.20608 1.21929 1.01925 0.90825 0.99577 1.18626 0.92685 0.90315 1.08265 1.20981 0.81127 0.89286 0.72833 1.90855 1.66221 1.36350 1.45483 1.86556 1.21382 1.34719 1.84041 1.23345 0.98596 0.81014 1.02703 1.21117 0.92452 0.97702 0.94032 0.91673 0.91665 0.87668 0.82488 0.89952 0.89946 0.77201 0.91664 0.82789 0.91662 0.87553 0.91668 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.68 9.80 -40.52 -0.40 -4.08 16 3 C 0.52 6.22 7.90 34.62 0.27 6.49 16 4 O -0.50 -6.96 16.13 -19.24 -0.31 -7.27 16 5 C -0.10 -1.19 5.87 -105.06 -0.62 -1.81 16 6 C -0.06 -0.71 9.55 -38.93 -0.37 -1.08 16 7 C 0.12 1.61 6.67 -39.34 -0.26 1.34 16 8 O -0.27 -4.59 9.66 -39.40 -0.38 -4.97 16 9 C 0.05 0.74 5.22 36.01 0.19 0.93 16 10 C 0.44 9.92 7.86 -10.99 -0.09 9.84 16 11 O -0.57 -15.39 16.08 -14.36 -0.23 -15.62 16 12 N -0.55 -13.17 5.29 -10.97 -0.06 -13.23 16 13 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 14 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 15 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.90 -23.16 13.05 55.50 0.72 -22.44 16 17 Si 0.93 20.12 29.55 -169.99 -5.02 15.10 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.12 -1.46 8.60 -38.93 -0.33 -1.80 16 22 C -0.10 -1.17 5.87 -105.06 -0.62 -1.78 16 23 C 0.51 6.32 7.90 34.62 0.27 6.59 16 24 O -0.50 -7.10 16.12 -19.24 -0.31 -7.41 16 25 O -0.35 -3.80 9.80 -40.50 -0.40 -4.20 16 26 C 0.04 0.29 10.56 101.05 1.07 1.35 16 27 C -0.03 -0.41 9.13 -38.75 -0.35 -0.77 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.16 1.78 7.60 -52.49 -0.40 1.39 16 32 H 0.08 1.12 7.66 -51.92 -0.40 0.72 16 33 H 0.08 1.12 7.64 -51.93 -0.40 0.73 16 34 H 0.39 8.77 7.90 -40.82 -0.32 8.44 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.15 1.63 5.81 -52.49 -0.30 1.32 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.15 1.87 7.22 -52.49 -0.38 1.49 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -33.51 365.80 -5.13 -38.64 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.25 Total: 6.93 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.01 Total: 13.04 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.67 Total: -35.67 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.03 Total: -43.56 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.51 -5.13 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342788577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.573 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds