Wall clock time and date at job start Tue Mar 31 2020 20:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99785 * 2 1 4 4 O 1.21471 * 120.00249 * 0.02562 * 3 2 1 5 5 C 1.47755 * 120.00050 * 180.02562 * 3 2 1 6 6 C 1.39673 * 120.04512 * 0.02562 * 5 3 2 7 7 C 1.38565 * 120.09329 * 180.02562 * 6 5 3 8 8 O 1.35922 * 119.90650 * 179.72333 * 7 6 5 9 9 C 1.42900 * 117.00356 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47318 * 180.02562 * 9 8 7 11 11 O 1.21294 * 119.99679 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99993 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00295 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99363 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00296 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47140 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47305 * 119.99933 * 17 15 13 20 20 H 1.48504 * 109.47096 * 239.99777 * 17 15 13 21 21 C 1.38564 * 120.18836 * 359.97438 * 7 6 5 22 22 C 1.39663 * 120.09647 * 359.97438 * 21 7 6 23 23 C 1.47755 * 120.05071 * 180.02562 * 22 21 7 24 24 O 1.21471 * 120.00155 * 179.97438 * 23 22 21 25 25 O 1.34703 * 119.99913 * 359.97438 * 23 22 21 26 26 C 1.45201 * 117.00410 * 179.97438 * 25 23 22 27 27 C 1.39356 * 120.05108 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.46907 * 300.00197 * 1 2 3 29 29 H 1.08999 * 109.47521 * 59.99717 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.95423 * 359.97438 * 6 5 3 32 32 H 1.09007 * 109.46973 * 300.00053 * 9 8 7 33 33 H 1.08994 * 109.46887 * 59.99488 * 9 8 7 34 34 H 0.97007 * 120.00132 * 0.02562 * 12 10 9 35 35 H 0.97004 * 119.99389 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.94707 * 180.02562 * 21 7 6 37 37 H 1.09000 * 109.46505 * 60.00282 * 26 25 23 38 38 H 1.08992 * 109.47360 * 180.02562 * 26 25 23 39 39 H 1.09004 * 109.46841 * 300.00692 * 26 25 23 40 40 H 1.08000 * 120.09453 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2777 -0.0006 6 6 4.3007 0.1069 -0.0017 7 6 5.6845 0.1784 -0.0017 8 8 6.4221 -0.9634 0.0030 9 6 7.8436 -0.8175 0.0021 10 6 8.4884 -2.1797 0.0071 11 8 7.7983 -3.1772 0.0114 12 7 9.8316 -2.2894 0.0067 13 6 10.4182 -3.5285 0.0117 14 1 9.8038 -4.4167 0.0155 15 6 11.8030 -3.6416 0.0118 16 7 12.5506 -2.5608 0.0076 17 14 12.6023 -5.3300 0.0179 18 1 11.5487 -6.3764 0.0227 19 1 13.4465 -5.4825 -1.1942 20 1 13.4471 -5.4733 1.2308 21 6 6.3186 1.4104 -0.0011 22 6 5.5648 2.5861 -0.0011 23 6 6.2420 3.8993 -0.0011 24 8 5.5854 4.9213 -0.0016 25 8 7.5875 3.9632 -0.0006 26 6 8.1846 5.2867 -0.0012 27 6 4.1728 2.5188 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.8105 -0.8554 -0.0017 32 1 8.1524 -0.2730 -0.8903 33 1 8.1527 -0.2656 0.8897 34 1 10.3834 -1.4916 0.0036 35 1 13.5174 -2.6398 0.0073 36 1 7.3974 1.4615 -0.0015 37 1 7.8653 5.8297 0.8883 38 1 9.2707 5.1953 -0.0012 39 1 7.8659 5.8287 -0.8917 40 1 3.5868 3.4261 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342788577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:27 Heat of formation + Delta-G solvation = -229.216423 kcal Electronic energy + Delta-G solvation = -27840.606177 eV Core-core repulsion = 23392.942454 eV Total energy + Delta-G solvation = -4447.663723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14666 -41.44130 -41.05130 -39.90151 -38.44474 -37.58722 -37.44577 -36.00564 -33.43264 -33.29223 -31.72441 -29.63669 -29.03502 -28.46008 -26.66299 -25.52032 -24.92811 -22.51327 -21.97336 -21.27594 -20.06627 -19.90124 -18.72358 -18.56593 -17.83090 -17.59524 -17.49496 -17.41941 -17.30088 -17.22601 -17.14058 -16.71653 -16.13421 -15.72359 -15.25670 -14.96753 -14.74450 -14.55869 -14.52951 -14.36150 -13.94245 -13.53588 -13.50933 -13.27046 -13.03617 -12.95239 -12.93458 -12.76962 -12.42724 -12.19594 -12.10016 -11.99025 -11.86091 -11.85320 -11.69357 -11.55439 -10.51810 -10.44341 -10.06783 -9.58762 -8.49508 -5.98696 -0.83841 -0.34508 1.02021 1.31657 1.37009 1.44890 1.50151 1.56775 1.67280 1.79797 1.93226 2.34750 2.46388 3.16857 3.17028 3.29039 3.48318 3.78223 3.80843 3.88783 3.89955 4.07109 4.24340 4.26461 4.29325 4.31136 4.35082 4.35946 4.38021 4.71676 4.74202 4.77661 4.85005 4.92522 5.11341 5.18476 5.20536 5.41067 5.90970 6.14290 6.50218 6.52374 6.54612 7.08370 7.46233 8.01112 8.67485 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002729 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.455539 B =10256.214684 C =12881.916655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.519 3.481 4 O -0.523 6.523 5 C -0.101 4.101 6 C -0.051 4.051 7 C 0.107 3.893 8 O -0.301 6.301 9 C 0.057 3.943 10 C 0.436 3.564 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.335 4.335 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.913 5.913 17 Si 0.992 3.008 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.108 4.108 22 C -0.100 4.100 23 C 0.517 3.483 24 O -0.525 6.525 25 O -0.353 6.353 26 C 0.028 3.972 27 C -0.030 4.030 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.402 0.598 35 H 0.280 0.720 36 H 0.172 0.828 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 13.443 -0.047 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.365 3.635 4 O -0.414 6.414 5 C -0.102 4.102 6 C -0.070 4.070 7 C 0.061 3.939 8 O -0.214 6.214 9 C -0.021 4.021 10 C 0.223 3.777 11 O -0.510 6.510 12 N -0.196 5.196 13 C -0.464 4.464 14 H 0.098 0.902 15 C -0.207 4.207 16 N -0.553 5.553 17 Si 0.816 3.184 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.127 4.127 22 C -0.101 4.101 23 C 0.362 3.638 24 O -0.415 6.415 25 O -0.268 6.268 26 C -0.064 4.064 27 C -0.049 4.049 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.180 0.820 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.189 0.811 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.086 0.914 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.680 13.216 -0.043 19.021 hybrid contribution 0.676 0.076 0.000 0.680 sum -13.004 13.292 -0.043 18.595 Atomic orbital electron populations 1.23664 0.73652 1.06107 1.03024 1.86566 1.25741 1.31173 1.83500 1.20900 0.88569 0.81820 0.72211 1.90847 1.66961 1.36762 1.46837 1.18558 0.89456 0.93247 1.08970 1.21037 0.90561 0.99794 0.95613 1.18871 0.91398 0.85383 0.98238 1.86218 1.18654 1.28184 1.88341 1.22510 0.78297 0.95583 1.05734 1.20257 0.82879 0.90841 0.83747 1.90548 1.63248 1.40479 1.56680 1.41715 1.04508 1.09169 1.64214 1.19690 0.90610 0.85774 1.50368 0.90156 1.26010 0.96056 1.02778 0.95879 1.69657 1.06598 1.29632 1.49453 0.84881 0.77932 0.77240 0.78380 1.19815 1.19553 1.19565 1.22003 1.02662 0.89951 0.98080 1.18622 0.92591 0.90434 1.08498 1.20986 0.81624 0.88919 0.72232 1.90847 1.66815 1.37074 1.46795 1.86543 1.20356 1.36436 1.83506 1.23659 0.99974 0.79828 1.02971 1.21157 0.92687 0.97661 0.93359 0.91401 0.91389 0.84839 0.81995 0.86683 0.86677 0.76319 0.91048 0.81110 0.91446 0.84839 0.91449 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.10 9.80 -56.20 -0.55 -7.65 16 3 C 0.52 12.19 7.90 70.34 0.56 12.75 16 4 O -0.52 -14.38 16.13 19.93 0.32 -14.06 16 5 C -0.10 -2.31 5.87 -20.15 -0.12 -2.43 16 6 C -0.05 -1.19 9.55 22.69 0.22 -0.98 16 7 C 0.11 2.69 6.67 22.43 0.15 2.84 16 8 O -0.30 -9.69 9.66 -73.64 -0.71 -10.40 16 9 C 0.06 1.73 5.22 71.24 0.37 2.11 16 10 C 0.44 19.64 7.86 87.66 0.69 20.33 16 11 O -0.62 -34.18 16.08 15.96 0.26 -33.93 16 12 N -0.56 -26.65 5.29 -306.99 -1.62 -28.27 16 13 C -0.34 -18.09 9.68 84.04 0.81 -17.28 16 14 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 15 C -0.01 -0.32 5.50 84.92 0.47 0.14 16 16 N -0.91 -46.28 13.05 21.66 0.28 -45.99 16 17 Si 0.99 40.86 29.55 68.60 2.03 42.88 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 C -0.11 -2.32 8.60 22.69 0.20 -2.13 16 22 C -0.10 -2.24 5.87 -20.15 -0.12 -2.35 16 23 C 0.52 11.96 7.90 70.34 0.56 12.51 16 24 O -0.52 -14.44 16.12 19.93 0.32 -14.12 16 25 O -0.35 -6.87 9.80 -56.13 -0.55 -7.42 16 26 C 0.03 0.38 10.56 113.37 1.20 1.58 16 27 C -0.03 -0.69 9.13 22.81 0.21 -0.49 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.16 3.56 7.60 -2.91 -0.02 3.53 16 32 H 0.12 2.78 7.66 -2.38 -0.02 2.76 16 33 H 0.12 2.78 7.64 -2.39 -0.02 2.76 16 34 H 0.40 17.60 7.90 -92.70 -0.73 16.87 16 35 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 36 H 0.17 3.04 5.81 -2.91 -0.02 3.02 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.15 3.60 7.22 -2.91 -0.02 3.58 16 Total: -1.00 -72.96 365.80 6.54 -66.42 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.38 Total: 24.35 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 6.38 Total: 28.19 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.34 Total: -74.27 kcal Atomic # 8 Polarization: -86.66 SS G_CDS: -0.91 Total: -87.57 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -72.96 6.54 -66.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342788577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.791 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds