Wall clock time and date at job start Tue Mar 31 2020 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47144 * 300.00359 * 3 2 1 6 6 H 1.48499 * 109.46783 * 60.00371 * 3 2 1 7 7 C 1.38952 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99903 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00050 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00116 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00256 * 180.02562 * 14 13 12 17 17 H 1.08998 * 110.85516 * 62.34085 * 16 14 13 18 18 C 1.54632 * 110.97107 * 298.55149 * 16 14 13 19 19 C 1.51280 * 104.19377 * 217.08201 * 18 16 14 20 20 O 1.21285 * 124.93932 * 196.26954 * 19 18 16 21 21 N 1.34418 * 110.11757 * 16.25335 * 19 18 16 22 22 C 1.46500 * 124.34808 * 180.41146 * 21 19 18 23 23 C 1.52997 * 109.47473 * 90.02040 * 22 21 19 24 24 F 1.39905 * 109.47157 * 59.99740 * 23 22 21 25 25 F 1.39900 * 109.47010 * 300.00131 * 23 22 21 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 22 21 27 27 C 1.46759 * 111.30223 * 0.66883 * 21 19 18 28 28 H 0.97006 * 119.99869 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00289 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46948 * 60.00565 * 12 10 9 31 31 H 1.09001 * 109.47283 * 300.00624 * 12 10 9 32 32 H 0.97005 * 120.00251 * 0.02562 * 13 12 10 33 33 H 1.08996 * 110.48727 * 98.40309 * 18 16 14 34 34 H 1.08999 * 110.59586 * 335.81406 * 18 16 14 35 35 H 1.09002 * 109.47129 * 330.01782 * 22 21 19 36 36 H 1.09001 * 109.46596 * 210.02137 * 22 21 19 37 37 H 1.09005 * 110.24338 * 101.72039 * 27 21 19 38 38 H 1.09000 * 110.25003 * 223.72417 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1957 -5.9764 -0.0030 14 6 1.7464 -7.2471 -0.0023 15 8 0.5540 -7.4688 -0.0006 16 6 2.7257 -8.3926 -0.0038 17 1 3.3386 -8.3803 0.8975 18 6 3.6080 -8.3648 -1.2734 19 6 3.7870 -9.8234 -1.6327 20 8 4.6310 -10.2537 -2.3900 21 7 2.8747 -10.5731 -0.9904 22 6 2.7723 -12.0299 -1.1064 23 6 3.6437 -12.6894 -0.0356 24 9 3.2064 -12.2906 1.2322 25 9 4.9756 -12.2999 -0.2132 26 9 3.5454 -14.0805 -0.1460 27 6 1.9907 -9.7441 -0.1626 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6161 -4.9205 -0.8904 31 1 0.6180 -4.9209 0.8896 32 1 3.1494 -5.7992 -0.0040 33 1 4.5720 -7.9039 -1.0580 34 1 3.1032 -7.8324 -2.0795 35 1 3.1130 -12.3405 -2.0941 36 1 1.7346 -12.3332 -0.9680 37 1 1.0328 -9.5992 -0.6621 38 1 1.8422 -10.2082 0.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343508483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:01 Heat of formation + Delta-G solvation = -259.190730 kcal Electronic energy + Delta-G solvation = -28800.993349 eV Core-core repulsion = 23842.465854 eV Total energy + Delta-G solvation = -4958.527495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.44909 -47.99765 -47.90755 -41.18137 -39.52624 -38.24127 -36.70691 -34.62924 -34.04986 -33.71594 -31.45934 -29.59909 -28.16228 -27.65508 -24.87069 -24.01882 -23.10564 -20.42484 -20.19769 -19.63370 -18.89015 -18.87553 -18.38495 -18.11567 -17.50982 -17.06666 -16.27028 -15.89738 -15.46094 -15.40010 -15.17550 -14.84093 -14.82389 -14.51186 -14.38998 -14.33873 -14.09979 -14.08811 -14.06909 -13.99225 -13.67237 -13.44514 -13.16365 -12.97351 -12.50547 -12.31723 -12.10207 -11.86027 -11.71521 -11.67059 -11.19370 -10.46977 -10.45799 -10.37646 -9.91421 -9.71510 -9.44416 -9.00980 -8.72761 -8.17510 -6.58235 -4.00416 1.89325 2.14529 2.46764 2.51444 3.05412 3.05662 3.19223 3.25916 3.37575 3.52999 3.65336 3.82777 3.84224 3.98100 4.05957 4.43456 4.49218 4.52237 4.68872 4.76761 4.91750 5.08034 5.10283 5.19249 5.39354 5.52304 5.74677 5.77499 5.82983 5.96426 6.42261 6.46075 7.40112 7.55043 7.61469 7.84558 8.16688 8.37177 8.97878 9.31438 9.78641 10.58488 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.001968 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.738530 B =14220.835088 C =14571.401873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.425 3.575 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.524 3.476 15 O -0.542 6.542 16 C -0.122 4.122 17 H 0.124 0.876 18 C -0.144 4.144 19 C 0.526 3.474 20 O -0.511 6.511 21 N -0.623 5.623 22 C 0.089 3.911 23 C 0.432 3.568 24 F -0.182 7.182 25 F -0.175 7.175 26 F -0.181 7.181 27 C 0.116 3.884 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.413 0.587 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -22.875 -0.209 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.211 3.789 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.353 5.353 14 C 0.308 3.692 15 O -0.420 6.420 16 C -0.143 4.143 17 H 0.142 0.858 18 C -0.185 4.185 19 C 0.314 3.686 20 O -0.384 6.384 21 N -0.358 5.358 22 C -0.037 4.037 23 C 0.376 3.624 24 F -0.163 7.163 25 F -0.156 7.156 26 F -0.163 7.163 27 C -0.006 4.006 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.252 0.748 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.002 -23.108 -0.609 23.203 hybrid contribution 0.280 0.828 0.350 0.942 sum 2.282 -22.280 -0.259 22.398 Atomic orbital electron populations 1.69617 1.06036 1.28525 1.49161 1.25341 0.95679 1.00010 0.96680 0.85753 0.79705 0.80741 0.77874 1.19092 1.20575 1.20575 1.19781 0.93507 0.81930 1.48257 0.87561 1.41808 1.09507 1.04518 1.62369 1.19707 0.88304 0.84965 0.85919 1.90507 1.13649 1.86764 1.57483 1.21005 0.91795 0.85717 1.03458 1.45674 1.11920 1.04488 1.73261 1.19888 0.88947 0.83554 0.76772 1.90719 1.16336 1.84654 1.50331 1.22251 0.97338 0.93829 1.00924 0.85840 1.22379 1.03227 0.94515 0.98336 1.20974 0.79573 0.89009 0.79011 1.90777 1.34584 1.77807 1.35273 1.48148 1.34658 1.04743 1.48253 1.22470 1.01611 0.80845 0.98735 1.21330 0.80701 0.76994 0.83391 1.93194 1.89289 1.90411 1.43415 1.93246 1.36618 1.90593 1.95190 1.93199 1.96088 1.30951 1.96051 1.22195 0.93527 0.88433 0.96443 0.91571 0.77026 0.89631 0.89596 0.74839 0.86262 0.86505 0.85344 0.85360 0.88136 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 13.05 55.50 0.72 -22.41 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 19.97 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -7.99 9.68 -14.93 -0.14 -8.14 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -12.88 5.29 -10.96 -0.06 -12.94 16 10 C 0.43 9.05 7.85 -10.99 -0.09 8.96 16 11 O -0.60 -14.32 15.24 5.55 0.08 -14.24 16 12 C 0.11 1.75 6.15 -5.20 -0.03 1.72 16 13 N -0.70 -9.61 5.48 -61.47 -0.34 -9.95 16 14 C 0.52 6.34 7.07 -10.99 -0.08 6.26 16 15 O -0.54 -8.07 15.57 5.55 0.09 -7.98 16 16 C -0.12 -1.03 3.56 -90.04 -0.32 -1.35 16 17 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.14 -1.25 6.36 -26.74 -0.17 -1.42 16 19 C 0.53 5.49 7.72 -10.86 -0.08 5.41 16 20 O -0.51 -7.10 17.59 5.55 0.10 -7.00 16 21 N -0.62 -5.08 2.80 -172.30 -0.48 -5.56 16 22 C 0.09 0.55 5.91 -4.04 -0.02 0.53 16 23 C 0.43 3.51 3.29 37.16 0.12 3.63 16 24 F -0.18 -1.56 16.57 2.25 0.04 -1.53 16 25 F -0.18 -1.90 16.96 2.25 0.04 -1.86 16 26 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 27 C 0.12 0.88 6.58 -3.03 -0.02 0.87 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.40 8.94 7.90 -40.82 -0.32 8.62 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.41 5.59 7.44 -40.82 -0.30 5.29 16 33 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.12 1.02 7.89 -51.93 -0.41 0.61 16 35 H 0.13 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.83 7.07 -51.93 -0.37 0.46 16 38 H 0.09 0.60 7.54 -51.93 -0.39 0.21 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -32.59 348.36 -4.31 -36.90 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -3.83 Total: 10.78 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: -0.93 Total: 17.03 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.15 Total: -50.86 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: 0.27 Total: -29.22 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.59 -4.31 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.290 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds