Wall clock time and date at job start Tue Mar 31 2020 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47144 * 300.00359 * 3 2 1 6 6 H 1.48499 * 109.46783 * 60.00371 * 3 2 1 7 7 C 1.38952 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99903 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00050 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00116 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00256 * 180.02562 * 14 13 12 17 17 H 1.08998 * 110.85516 * 62.34085 * 16 14 13 18 18 C 1.54632 * 110.97107 * 298.55149 * 16 14 13 19 19 C 1.51280 * 104.19377 * 217.08201 * 18 16 14 20 20 O 1.21285 * 124.93932 * 196.26954 * 19 18 16 21 21 N 1.34418 * 110.11757 * 16.25335 * 19 18 16 22 22 C 1.46500 * 124.34808 * 180.41146 * 21 19 18 23 23 C 1.52997 * 109.47473 * 90.02040 * 22 21 19 24 24 F 1.39905 * 109.47157 * 59.99740 * 23 22 21 25 25 F 1.39900 * 109.47010 * 300.00131 * 23 22 21 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 22 21 27 27 C 1.46759 * 111.30223 * 0.66883 * 21 19 18 28 28 H 0.97006 * 119.99869 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00289 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46948 * 60.00565 * 12 10 9 31 31 H 1.09001 * 109.47283 * 300.00624 * 12 10 9 32 32 H 0.97005 * 120.00251 * 0.02562 * 13 12 10 33 33 H 1.08996 * 110.48727 * 98.40309 * 18 16 14 34 34 H 1.08999 * 110.59586 * 335.81406 * 18 16 14 35 35 H 1.09002 * 109.47129 * 330.01782 * 22 21 19 36 36 H 1.09001 * 109.46596 * 210.02137 * 22 21 19 37 37 H 1.09005 * 110.24338 * 101.72039 * 27 21 19 38 38 H 1.09000 * 110.25003 * 223.72417 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1957 -5.9764 -0.0030 14 6 1.7464 -7.2471 -0.0023 15 8 0.5540 -7.4688 -0.0006 16 6 2.7257 -8.3926 -0.0038 17 1 3.3386 -8.3803 0.8975 18 6 3.6080 -8.3648 -1.2734 19 6 3.7870 -9.8234 -1.6327 20 8 4.6310 -10.2537 -2.3900 21 7 2.8747 -10.5731 -0.9904 22 6 2.7723 -12.0299 -1.1064 23 6 3.6437 -12.6894 -0.0356 24 9 3.2064 -12.2906 1.2322 25 9 4.9756 -12.2999 -0.2132 26 9 3.5454 -14.0805 -0.1460 27 6 1.9907 -9.7441 -0.1626 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6161 -4.9205 -0.8904 31 1 0.6180 -4.9209 0.8896 32 1 3.1494 -5.7992 -0.0040 33 1 4.5720 -7.9039 -1.0580 34 1 3.1032 -7.8324 -2.0795 35 1 3.1130 -12.3405 -2.0941 36 1 1.7346 -12.3332 -0.9680 37 1 1.0328 -9.5992 -0.6621 38 1 1.8422 -10.2082 0.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:01 Heat of formation + Delta-G solvation = -283.524226 kcal Electronic energy + Delta-G solvation = -28802.048529 eV Core-core repulsion = 23842.465854 eV Total energy + Delta-G solvation = -4959.582675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.11445 -48.64451 -48.61700 -41.99072 -40.69931 -39.80259 -37.55598 -36.23291 -35.32913 -34.60248 -33.34647 -30.41299 -29.05974 -28.75605 -26.52413 -24.78915 -23.95127 -21.37050 -21.28643 -20.96082 -20.04085 -19.55794 -19.54010 -19.12620 -18.38556 -17.89651 -17.39697 -16.98743 -16.83811 -16.56715 -16.37762 -15.99785 -15.59937 -15.55445 -15.52643 -15.46196 -15.05311 -14.85914 -14.81661 -14.76586 -14.74335 -14.27648 -14.17344 -13.87944 -13.54340 -13.53186 -13.43839 -13.16274 -12.90538 -12.58132 -12.44044 -12.41817 -12.10841 -11.56062 -11.34847 -10.89470 -10.52801 -10.20768 -10.11823 -10.05560 -8.49981 -5.99444 1.16986 1.36074 1.44026 1.46654 1.51717 1.57665 1.84899 1.94002 2.02017 2.32132 2.78278 2.94492 3.09318 3.16118 3.17856 3.21210 3.28041 3.69078 3.76948 4.01524 4.12489 4.23355 4.27156 4.47630 4.48519 4.50334 4.56055 4.74640 4.88401 5.12868 5.27536 5.40584 5.71538 5.93995 6.45985 6.53243 6.84589 7.05923 7.12361 7.47395 7.97477 8.66972 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.001968 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.738530 B =14220.835088 C =14571.401873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.086 0.914 9 N -0.562 5.562 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.121 3.879 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.567 6.567 16 C -0.111 4.111 17 H 0.147 0.853 18 C -0.142 4.142 19 C 0.523 3.477 20 O -0.551 6.551 21 N -0.617 5.617 22 C 0.088 3.912 23 C 0.431 3.569 24 F -0.184 7.184 25 F -0.194 7.194 26 F -0.181 7.181 27 C 0.119 3.881 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -23.608 0.174 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.104 0.896 9 N -0.197 5.197 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.357 5.357 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.133 4.133 17 H 0.164 0.836 18 C -0.182 4.182 19 C 0.312 3.688 20 O -0.428 6.428 21 N -0.350 5.350 22 C -0.037 4.037 23 C 0.375 3.625 24 F -0.165 7.165 25 F -0.176 7.176 26 F -0.163 7.163 27 C -0.002 4.002 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.117 0.883 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.486 -23.873 -0.208 23.920 hybrid contribution 0.425 0.943 0.251 1.064 sum 1.910 -22.930 0.043 23.009 Atomic orbital electron populations 1.69676 1.06921 1.29481 1.49542 1.26084 0.96514 1.02599 0.95971 0.84850 0.78181 0.76985 0.78219 1.19469 1.19798 1.19754 1.19743 0.92919 0.83590 1.50087 0.89612 1.41866 1.09621 1.04674 1.63564 1.20522 0.88165 0.86031 0.83345 1.90488 1.15208 1.87567 1.57908 1.20802 0.91654 0.83659 1.04572 1.45695 1.11562 1.04518 1.73904 1.20349 0.89118 0.83447 0.75329 1.90717 1.17694 1.84907 1.51273 1.22225 0.96615 0.92605 1.01810 0.83569 1.22381 1.03797 0.93658 0.98343 1.21210 0.79264 0.89780 0.78544 1.90758 1.36346 1.78552 1.37190 1.48183 1.33820 1.05598 1.47448 1.22740 1.03253 0.79464 0.98227 1.21598 0.80069 0.77088 0.83732 1.93187 1.89170 1.90427 1.43746 1.93212 1.38284 1.90795 1.95302 1.93197 1.96016 1.31016 1.96059 1.22240 0.92969 0.87895 0.97134 0.91147 0.76683 0.88463 0.88405 0.74596 0.85308 0.86570 0.84963 0.81710 0.88296 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.28 13.05 21.66 0.28 -46.99 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 40.75 29.55 68.60 2.03 42.78 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.33 -17.73 9.68 84.04 0.81 -16.91 16 8 H 0.09 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.56 -26.64 5.29 -306.99 -1.62 -28.26 16 10 C 0.43 18.29 7.85 87.66 0.69 18.98 16 11 O -0.62 -29.95 15.24 -3.07 -0.05 -30.00 16 12 C 0.12 3.76 6.15 85.63 0.53 4.29 16 13 N -0.70 -18.14 5.48 -466.79 -2.56 -20.70 16 14 C 0.53 11.71 7.07 87.66 0.62 12.33 16 15 O -0.57 -15.64 15.57 -3.05 -0.05 -15.69 16 16 C -0.11 -1.61 3.56 -10.42 -0.04 -1.64 16 17 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.14 -2.22 6.36 30.59 0.19 -2.03 16 19 C 0.52 10.26 7.72 87.90 0.68 10.94 16 20 O -0.55 -15.14 17.59 -3.05 -0.05 -15.20 16 21 N -0.62 -8.75 2.80 -817.62 -2.29 -11.04 16 22 C 0.09 0.89 5.91 86.38 0.51 1.40 16 23 C 0.43 6.30 3.29 71.98 0.24 6.53 16 24 F -0.18 -2.78 16.57 44.97 0.74 -2.04 16 25 F -0.19 -4.08 16.96 44.97 0.76 -3.32 16 26 F -0.18 -2.67 17.32 44.97 0.78 -1.89 16 27 C 0.12 1.49 6.58 86.90 0.57 2.06 16 28 H 0.28 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.40 18.14 7.90 -92.71 -0.73 17.41 16 30 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.42 10.65 7.44 -92.70 -0.69 9.97 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.87 7.89 -2.39 -0.02 1.85 16 35 H 0.13 1.32 7.92 -2.39 -0.02 1.30 16 36 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.10 1.36 7.07 -2.38 -0.02 1.34 16 38 H 0.11 1.06 7.54 -2.39 -0.02 1.04 16 Total: -1.00 -70.21 348.36 2.99 -67.22 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.26 Total: 29.26 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 5.27 Total: 35.86 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -6.19 Total: -107.00 kcal Atomic # 8 Polarization: -60.74 SS G_CDS: -0.15 Total: -60.89 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.29 Total: -7.24 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -70.21 2.99 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.301 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds