Wall clock time and date at job start Tue Mar 31 2020 19:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99838 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.85963 * 303.78890 * 16 14 13 18 18 C 1.54625 * 110.97290 * 67.61825 * 16 14 13 19 19 C 1.51278 * 104.19750 * 142.91663 * 18 16 14 20 20 O 1.21285 * 124.94530 * 163.75096 * 19 18 16 21 21 N 1.34421 * 110.11629 * 343.75057 * 19 18 16 22 22 C 1.46497 * 124.35112 * 179.61155 * 21 19 18 23 23 C 1.53005 * 109.47377 * 269.97520 * 22 21 19 24 24 F 1.39905 * 109.46581 * 60.00099 * 23 22 21 25 25 F 1.39894 * 109.47076 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47051 * 300.00320 * 23 22 21 27 27 C 1.46762 * 111.29850 * 359.59108 * 21 19 18 28 28 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 31 31 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 33 33 H 1.08994 * 110.48891 * 261.59742 * 18 16 14 34 34 H 1.09007 * 110.48561 * 24.23799 * 18 16 14 35 35 H 1.09001 * 109.47281 * 29.98126 * 22 21 19 36 36 H 1.09008 * 109.47284 * 149.97709 * 22 21 19 37 37 H 1.09001 * 110.24496 * 258.01350 * 27 21 19 38 38 H 1.09003 * 110.31679 * 136.05300 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5541 -7.4688 -0.0028 16 6 2.7258 -8.3926 -0.0027 17 1 3.4086 -8.3195 -0.8491 18 6 3.5032 -8.4560 1.3324 19 6 3.6569 -9.9365 1.6023 20 8 4.4384 -10.4211 2.3933 21 7 2.8014 -10.6371 0.8379 22 6 2.6939 -12.0981 0.8436 23 6 3.6504 -12.6840 -0.1969 24 9 4.9626 -12.3118 0.1142 25 9 3.5480 -14.0792 -0.1910 26 9 3.3155 -12.1967 -1.4648 27 6 1.9887 -9.7502 -0.0027 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6174 -4.9205 -0.8924 31 1 0.6168 -4.9209 0.8876 32 1 3.1494 -5.7992 -0.0022 33 1 4.4800 -7.9838 1.2280 34 1 2.9318 -7.9802 2.1296 35 1 2.9547 -12.4778 1.8315 36 1 1.6714 -12.3881 0.6013 37 1 0.9911 -9.6378 0.4219 38 1 1.9242 -10.1443 -1.0170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343508490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:04 Heat of formation + Delta-G solvation = -259.067717 kcal Electronic energy + Delta-G solvation = -28786.580225 eV Core-core repulsion = 23828.058064 eV Total energy + Delta-G solvation = -4958.522161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.44956 -48.00012 -47.90640 -41.18482 -39.52599 -38.24165 -36.70803 -34.62197 -34.03817 -33.72844 -31.45926 -29.59530 -28.18736 -27.65568 -24.86962 -24.02142 -23.08584 -20.44289 -20.18944 -19.62920 -18.89133 -18.87644 -18.38526 -18.11565 -17.52767 -17.05412 -16.25461 -15.90452 -15.46342 -15.40428 -15.17038 -14.84206 -14.82346 -14.51249 -14.38992 -14.33835 -14.09418 -14.08536 -14.05860 -14.00926 -13.67148 -13.45068 -13.16896 -12.97565 -12.50374 -12.31226 -12.11553 -11.84655 -11.70868 -11.66421 -11.15343 -10.55549 -10.46645 -10.36765 -9.92171 -9.69200 -9.43415 -9.01109 -8.72649 -8.17347 -6.57851 -4.00178 1.89064 2.14609 2.45735 2.51888 3.04997 3.09271 3.18223 3.22541 3.37537 3.53045 3.65660 3.83531 3.84549 3.99151 4.06070 4.43625 4.49176 4.52497 4.69044 4.76924 4.91020 5.07671 5.10434 5.19881 5.39182 5.52545 5.74634 5.77659 5.83084 5.96580 6.42246 6.46162 7.39877 7.55212 7.61313 7.84244 8.16717 8.37438 8.97828 9.31488 9.78849 10.58730 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.032834 B = 0.001959 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.579100 B =14289.949710 C =14576.460942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.425 3.575 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.524 3.476 15 O -0.542 6.542 16 C -0.122 4.122 17 H 0.122 0.878 18 C -0.142 4.142 19 C 0.526 3.474 20 O -0.511 6.511 21 N -0.623 5.623 22 C 0.089 3.911 23 C 0.432 3.568 24 F -0.175 7.175 25 F -0.181 7.181 26 F -0.181 7.181 27 C 0.115 3.885 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.413 0.587 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -22.828 -0.316 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.353 5.353 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.144 4.144 17 H 0.140 0.860 18 C -0.183 4.183 19 C 0.314 3.686 20 O -0.385 6.385 21 N -0.357 5.357 22 C -0.037 4.037 23 C 0.376 3.624 24 F -0.157 7.157 25 F -0.163 7.163 26 F -0.163 7.163 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.252 0.748 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.925 -23.084 0.101 23.164 hybrid contribution 0.333 0.845 -0.353 0.974 sum 2.259 -22.239 -0.252 22.355 Atomic orbital electron populations 1.69599 1.06028 1.28746 1.48980 1.25339 0.95679 0.99999 0.96639 0.85862 0.78792 0.80063 0.79209 1.19732 1.20831 1.19730 1.19682 0.93455 0.81963 1.48511 0.87671 1.41790 1.09500 1.04499 1.62345 1.19700 0.88302 0.84960 0.85965 1.90503 1.13656 1.86758 1.57521 1.21007 0.91791 0.85719 1.03452 1.45669 1.11925 1.04477 1.73226 1.19871 0.88944 0.83561 0.76773 1.90715 1.16346 1.84625 1.50356 1.22205 0.98012 0.93821 1.00367 0.85996 1.22353 1.04058 0.94087 0.97757 1.20973 0.78791 0.89546 0.79250 1.90777 1.36757 1.75768 1.35163 1.48137 1.40010 1.04305 1.43285 1.22473 1.00200 0.81298 0.99682 1.21335 0.82030 0.76255 0.82810 1.93247 1.38647 1.91079 1.92684 1.93198 1.96099 1.30381 1.96610 1.93192 1.92191 1.87627 1.43291 1.22174 0.95226 0.87115 0.96255 0.91460 0.77017 0.89604 0.89630 0.74832 0.86264 0.86546 0.85336 0.85356 0.87994 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 13.05 55.50 0.72 -22.40 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.31 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.11 2.87 7.16 -52.49 -0.38 2.49 16 9 N -0.55 -12.88 5.29 -10.96 -0.06 -12.93 16 10 C 0.43 9.05 7.85 -10.98 -0.09 8.96 16 11 O -0.60 -14.33 15.24 5.55 0.08 -14.25 16 12 C 0.11 1.75 6.15 -5.19 -0.03 1.72 16 13 N -0.70 -9.62 5.53 -61.47 -0.34 -9.96 16 14 C 0.52 6.35 7.06 -10.99 -0.08 6.27 16 15 O -0.54 -8.07 15.50 5.55 0.09 -7.98 16 16 C -0.12 -1.04 3.54 -90.14 -0.32 -1.36 16 17 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.14 -1.23 6.41 -26.75 -0.17 -1.40 16 19 C 0.53 5.49 7.72 -10.86 -0.08 5.41 16 20 O -0.51 -7.09 17.59 5.55 0.10 -7.00 16 21 N -0.62 -5.09 2.81 -172.41 -0.48 -5.57 16 22 C 0.09 0.55 5.91 -4.04 -0.02 0.53 16 23 C 0.43 3.51 3.29 37.16 0.12 3.63 16 24 F -0.18 -1.90 16.96 2.25 0.04 -1.86 16 25 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 26 F -0.18 -1.57 16.54 2.25 0.04 -1.53 16 27 C 0.11 0.87 6.63 -3.12 -0.02 0.85 16 28 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.40 8.95 7.90 -40.82 -0.32 8.62 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.41 5.60 7.44 -40.82 -0.30 5.29 16 33 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.12 1.01 7.89 -51.93 -0.41 0.60 16 35 H 0.13 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.10 0.85 6.96 -51.93 -0.36 0.49 16 38 H 0.09 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -32.52 348.25 -4.31 -36.83 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.82 Total: 10.86 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: -0.93 Total: 17.02 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.16 Total: -50.87 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: 0.27 Total: -29.22 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.52 -4.31 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.239 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds