Wall clock time and date at job start Tue Mar 31 2020 19:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99838 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.85963 * 303.78890 * 16 14 13 18 18 C 1.54625 * 110.97290 * 67.61825 * 16 14 13 19 19 C 1.51278 * 104.19750 * 142.91663 * 18 16 14 20 20 O 1.21285 * 124.94530 * 163.75096 * 19 18 16 21 21 N 1.34421 * 110.11629 * 343.75057 * 19 18 16 22 22 C 1.46497 * 124.35112 * 179.61155 * 21 19 18 23 23 C 1.53005 * 109.47377 * 269.97520 * 22 21 19 24 24 F 1.39905 * 109.46581 * 60.00099 * 23 22 21 25 25 F 1.39894 * 109.47076 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47051 * 300.00320 * 23 22 21 27 27 C 1.46762 * 111.29850 * 359.59108 * 21 19 18 28 28 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 31 31 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 33 33 H 1.08994 * 110.48891 * 261.59742 * 18 16 14 34 34 H 1.09007 * 110.48561 * 24.23799 * 18 16 14 35 35 H 1.09001 * 109.47281 * 29.98126 * 22 21 19 36 36 H 1.09008 * 109.47284 * 149.97709 * 22 21 19 37 37 H 1.09001 * 110.24496 * 258.01350 * 27 21 19 38 38 H 1.09003 * 110.31679 * 136.05300 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5541 -7.4688 -0.0028 16 6 2.7258 -8.3926 -0.0027 17 1 3.4086 -8.3195 -0.8491 18 6 3.5032 -8.4560 1.3324 19 6 3.6569 -9.9365 1.6023 20 8 4.4384 -10.4211 2.3933 21 7 2.8014 -10.6371 0.8379 22 6 2.6939 -12.0981 0.8436 23 6 3.6504 -12.6840 -0.1969 24 9 4.9626 -12.3118 0.1142 25 9 3.5480 -14.0792 -0.1910 26 9 3.3155 -12.1967 -1.4648 27 6 1.9887 -9.7502 -0.0027 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6174 -4.9205 -0.8924 31 1 0.6168 -4.9209 0.8876 32 1 3.1494 -5.7992 -0.0022 33 1 4.4800 -7.9838 1.2280 34 1 2.9318 -7.9802 2.1296 35 1 2.9547 -12.4778 1.8315 36 1 1.6714 -12.3881 0.6013 37 1 0.9911 -9.6378 0.4219 38 1 1.9242 -10.1443 -1.0170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:03 Heat of formation + Delta-G solvation = -283.351392 kcal Electronic energy + Delta-G solvation = -28787.633244 eV Core-core repulsion = 23828.058064 eV Total energy + Delta-G solvation = -4959.575180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.11536 -48.64503 -48.61869 -41.99410 -40.69955 -39.80270 -37.55757 -36.23022 -35.31780 -34.60953 -33.34577 -30.41017 -29.08440 -28.75581 -26.52310 -24.79003 -23.93648 -21.36324 -21.30207 -20.95834 -20.03798 -19.55911 -19.54182 -19.12972 -18.39976 -17.88294 -17.38606 -16.99621 -16.82509 -16.57665 -16.37715 -16.00216 -15.59002 -15.55300 -15.52906 -15.46643 -15.05446 -14.86485 -14.81653 -14.76633 -14.74658 -14.27480 -14.16414 -13.87845 -13.53712 -13.52171 -13.45444 -13.16329 -12.88659 -12.57720 -12.45307 -12.42100 -12.13273 -11.54071 -11.34843 -10.90095 -10.52686 -10.20156 -10.11740 -10.05670 -8.49452 -5.99120 1.16646 1.39278 1.43931 1.46096 1.51856 1.54598 1.84911 1.94465 2.01710 2.32302 2.78211 2.94507 3.09952 3.16593 3.18233 3.21203 3.29278 3.68814 3.77114 4.01647 4.12053 4.23400 4.27063 4.47227 4.48512 4.50196 4.56496 4.74450 4.88436 5.12798 5.27663 5.40272 5.71481 5.93871 6.46184 6.53437 6.84465 7.05878 7.12379 7.47529 7.97636 8.67018 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.032834 B = 0.001959 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.579100 B =14289.949710 C =14576.460942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.121 3.879 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.567 6.567 16 C -0.112 4.112 17 H 0.145 0.855 18 C -0.140 4.140 19 C 0.523 3.477 20 O -0.551 6.551 21 N -0.617 5.617 22 C 0.088 3.912 23 C 0.431 3.569 24 F -0.194 7.194 25 F -0.181 7.181 26 F -0.184 7.184 27 C 0.118 3.882 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -23.543 -0.762 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.197 5.197 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.356 5.356 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.134 4.134 17 H 0.163 0.837 18 C -0.180 4.180 19 C 0.312 3.688 20 O -0.428 6.428 21 N -0.350 5.350 22 C -0.037 4.037 23 C 0.375 3.625 24 F -0.176 7.176 25 F -0.163 7.163 26 F -0.165 7.165 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.183 0.817 37 H 0.118 0.882 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.493 -23.831 -0.367 23.881 hybrid contribution 0.456 0.952 -0.236 1.082 sum 1.948 -22.879 -0.603 22.970 Atomic orbital electron populations 1.69663 1.06923 1.29622 1.49379 1.26086 0.96514 1.02603 0.95926 0.84966 0.77739 0.76473 0.79067 1.19527 1.19803 1.19581 1.19676 0.92941 0.83610 1.50307 0.89587 1.41852 1.09616 1.04664 1.63542 1.20513 0.88167 0.86023 0.83389 1.90484 1.15203 1.87560 1.57937 1.20803 0.91653 0.83669 1.04560 1.45689 1.11567 1.04502 1.73871 1.20329 0.89112 0.83456 0.75334 1.90713 1.17710 1.84882 1.51286 1.22178 0.97428 0.92625 1.01121 0.83729 1.22356 1.04654 0.93205 0.97761 1.21209 0.78445 0.90278 0.78864 1.90758 1.38547 1.76527 1.37009 1.48175 1.39117 1.05226 1.42484 1.22743 1.01609 0.79951 0.99372 1.21602 0.81489 0.76302 0.83104 1.93213 1.40280 1.91272 1.92836 1.93196 1.96029 1.30435 1.96624 1.93185 1.92089 1.87648 1.43602 1.22216 0.94661 0.86499 0.97021 0.91130 0.76683 0.88408 0.88485 0.74582 0.85284 0.86601 0.84947 0.81713 0.88223 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.28 13.05 21.66 0.28 -47.00 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 0.99 40.69 29.55 68.60 2.03 42.72 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.34 -17.82 9.68 84.04 0.81 -17.01 16 8 H 0.09 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.56 -26.62 5.29 -306.99 -1.62 -28.24 16 10 C 0.43 18.28 7.85 87.66 0.69 18.97 16 11 O -0.62 -29.93 15.24 -3.05 -0.05 -29.97 16 12 C 0.12 3.77 6.15 85.63 0.53 4.29 16 13 N -0.70 -18.14 5.53 -466.77 -2.58 -20.72 16 14 C 0.53 11.73 7.06 87.66 0.62 12.35 16 15 O -0.57 -15.65 15.50 -3.04 -0.05 -15.70 16 16 C -0.11 -1.62 3.54 -10.49 -0.04 -1.66 16 17 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 18 C -0.14 -2.19 6.41 30.58 0.20 -1.99 16 19 C 0.52 10.25 7.72 87.90 0.68 10.93 16 20 O -0.55 -15.11 17.59 -3.05 -0.05 -15.16 16 21 N -0.62 -8.77 2.81 -817.97 -2.29 -11.06 16 22 C 0.09 0.90 5.91 86.38 0.51 1.41 16 23 C 0.43 6.30 3.29 71.98 0.24 6.54 16 24 F -0.19 -4.08 16.96 44.97 0.76 -3.32 16 25 F -0.18 -2.67 17.32 44.97 0.78 -1.89 16 26 F -0.18 -2.79 16.54 44.97 0.74 -2.04 16 27 C 0.12 1.48 6.63 86.83 0.58 2.05 16 28 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.40 18.15 7.90 -92.71 -0.73 17.41 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.42 10.65 7.44 -92.71 -0.69 9.96 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.86 7.89 -2.38 -0.02 1.84 16 35 H 0.13 1.32 7.92 -2.39 -0.02 1.30 16 36 H 0.17 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.10 1.39 6.96 -2.39 -0.02 1.37 16 38 H 0.11 1.05 7.53 -2.39 -0.02 1.03 16 Total: -1.00 -70.03 348.25 2.96 -67.07 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.26 Total: 29.50 kcal Atomic # 6 Polarization: 30.53 SS G_CDS: 5.28 Total: 35.81 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -6.22 Total: -107.02 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -0.15 Total: -60.83 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.28 Total: -7.25 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -70.03 2.96 -67.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.284 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds