Wall clock time and date at job start Tue Mar 31 2020 20:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40583 * 127.39867 * 2 1 4 4 N 1.28896 * 106.86350 * 180.02562 * 3 2 1 5 5 N 1.28419 * 110.39277 * 359.97438 * 4 3 2 6 6 C 1.31629 * 110.49661 * 0.02562 * 5 4 3 7 7 C 1.48014 * 126.47903 * 179.97438 * 6 5 4 8 8 C 1.39500 * 120.13557 * 201.11190 * 7 6 5 9 9 C 1.37958 * 119.86366 * 180.02562 * 8 7 6 10 10 C 1.38364 * 120.13620 * 359.97438 * 9 8 7 11 11 C 1.38326 * 120.27088 * 0.02562 * 10 9 8 12 12 S 1.76204 * 119.92891 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40021 * 203.53751 * 12 11 10 14 14 O 1.42095 * 106.40096 * 336.45743 * 12 11 10 15 15 N 1.65597 * 107.21824 * 89.99706 * 12 11 10 16 16 C 1.46505 * 119.99873 * 64.99871 * 15 12 11 17 17 C 1.53004 * 109.47055 * 165.00160 * 16 15 12 18 18 C 1.50694 * 109.47060 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00285 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47528 * 89.99903 * 22 20 18 24 24 H 1.48507 * 109.47206 * 210.00316 * 22 20 18 25 25 H 1.48506 * 109.47002 * 329.99870 * 22 20 18 26 26 C 1.38001 * 120.13694 * 359.76022 * 11 10 9 27 27 H 1.09007 * 109.47362 * 96.36856 * 1 2 3 28 28 H 1.09000 * 109.47434 * 216.36603 * 1 2 3 29 29 H 1.08996 * 109.47189 * 336.36824 * 1 2 3 30 30 H 1.08000 * 120.06795 * 359.97438 * 8 7 6 31 31 H 1.07997 * 119.93542 * 179.97438 * 9 8 7 32 32 H 1.07997 * 119.86843 * 180.02562 * 10 9 8 33 33 H 0.97002 * 120.00444 * 245.00207 * 15 12 11 34 34 H 1.09004 * 109.47255 * 284.99581 * 16 15 12 35 35 H 1.09000 * 109.47132 * 45.00240 * 16 15 12 36 36 H 1.09004 * 109.46617 * 299.99813 * 17 16 15 37 37 H 1.08997 * 109.47527 * 59.99793 * 17 16 15 38 38 H 0.97005 * 119.99686 * 180.02562 * 21 20 18 39 39 H 1.07994 * 120.07075 * 180.27792 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3188 1.1168 0.0000 4 7 3.5258 0.6647 -0.0006 5 7 3.5226 -0.6195 -0.0004 6 6 2.2885 -1.0773 -0.0002 7 6 1.8775 -2.4993 -0.0005 8 6 0.6017 -2.8594 -0.4349 9 6 0.2242 -4.1863 -0.4323 10 6 1.1083 -5.1592 -0.0006 11 6 2.3747 -4.8084 0.4313 12 16 3.4935 -6.0548 0.9786 13 8 4.4235 -5.4099 1.8379 14 8 2.6967 -7.1590 1.3845 15 7 4.3516 -6.5587 -0.3450 16 6 5.2552 -5.6304 -1.0291 17 6 6.1868 -6.4148 -1.9552 18 6 7.1167 -5.4599 -2.6584 19 1 7.0497 -4.3996 -2.4646 20 6 8.0532 -5.9400 -3.5493 21 7 8.1345 -7.2312 -3.7858 22 14 9.2063 -4.7565 -4.4204 23 1 10.4362 -4.5756 -3.6082 24 1 9.5684 -5.3075 -5.7511 25 1 8.5310 -3.4454 -4.5947 26 6 2.7656 -3.4849 0.4293 27 1 -0.3634 -0.1140 -1.0214 28 1 -0.3634 -0.8275 0.6093 29 1 -0.3633 0.9414 0.4119 30 1 -0.0894 -2.1008 -0.7717 31 1 -0.7634 -4.4663 -0.7679 32 1 0.8084 -6.1967 -0.0007 33 1 4.2559 -7.4685 -0.6675 34 1 4.6714 -4.9216 -1.6166 35 1 5.8475 -5.0896 -0.2910 36 1 6.7706 -7.1236 -1.3678 37 1 5.5946 -6.9556 -2.6934 38 1 8.7936 -7.5689 -4.4123 39 1 3.7561 -3.2127 0.7625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343999529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:52 Heat of formation + Delta-G solvation = 70.531023 kcal Electronic energy + Delta-G solvation = -26234.642955 eV Core-core repulsion = 22307.315630 eV Total energy + Delta-G solvation = -3927.327325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.25175 -39.69626 -37.15507 -35.78234 -35.70363 -35.44162 -33.48156 -32.74489 -31.79699 -30.72514 -29.15844 -28.76553 -24.59005 -24.45547 -24.08310 -22.99058 -21.87534 -21.14570 -19.49363 -18.36522 -17.42851 -17.36149 -17.04056 -16.57154 -16.34492 -16.03751 -15.67344 -15.24311 -14.55362 -14.38052 -14.29102 -14.28348 -13.99725 -13.88473 -13.50274 -13.27617 -12.70749 -12.57559 -12.28259 -12.14096 -12.01093 -11.87882 -11.80280 -11.30002 -11.25129 -11.17983 -11.09101 -10.94124 -10.80823 -10.62181 -10.46430 -9.87649 -9.58821 -9.27611 -9.26138 -8.98761 -8.39711 -6.06798 -4.09865 -0.05758 0.36574 0.59339 1.05873 1.42894 2.08569 2.90603 3.26229 3.32588 3.33715 3.38891 3.43538 3.72899 3.82343 4.11847 4.24067 4.35555 4.43312 4.48131 4.52159 4.63636 4.67104 4.97959 4.99121 5.03010 5.17479 5.30502 5.36452 5.52566 5.64563 5.68685 5.70784 5.79371 6.16511 6.21406 6.43757 6.69878 7.33065 7.55847 7.64225 7.91818 8.19389 8.29168 8.96281 9.55224 11.04550 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.003866 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.881785 B = 7240.007985 C = 9429.777193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.380 5.380 3 N -0.084 5.084 4 N -0.031 5.031 5 N -0.312 5.312 6 C 0.292 3.708 7 C -0.062 4.062 8 C -0.052 4.052 9 C -0.138 4.138 10 C 0.008 3.992 11 C -0.672 4.672 12 S 2.691 3.309 13 O -0.951 6.951 14 O -0.966 6.966 15 N -1.107 6.107 16 C 0.115 3.885 17 C 0.019 3.981 18 C -0.524 4.524 19 H 0.061 0.939 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.039 3.961 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.418 0.582 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 8.042 7.288 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.177 5.177 3 N -0.069 5.069 4 N -0.027 5.027 5 N -0.164 5.164 6 C 0.017 3.983 7 C -0.066 4.066 8 C -0.072 4.072 9 C -0.156 4.156 10 C -0.012 4.012 11 C -0.756 4.756 12 S 2.778 3.222 13 O -0.941 6.941 14 O -0.956 6.956 15 N -0.869 5.869 16 C -0.010 4.010 17 C -0.020 4.020 18 C -0.563 4.563 19 H 0.079 0.921 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.197 1.197 26 C 0.018 3.982 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.679 8.956 8.097 24.814 hybrid contribution -0.655 0.300 -1.356 1.535 sum -22.334 9.256 6.741 25.099 Atomic orbital electron populations 1.22425 0.72507 1.06469 1.04760 1.51673 1.09717 1.04483 1.51822 1.82534 0.95346 1.07049 1.22002 1.78045 1.12348 1.02810 1.09452 1.74901 1.16989 1.02891 1.21572 1.23461 0.86843 0.90655 0.97349 1.17463 0.95868 0.86122 1.07161 1.21621 0.93936 0.97629 0.94037 1.21201 1.00855 0.92007 1.01560 1.21226 0.90635 1.01035 0.88291 1.31380 1.13177 1.13310 1.17757 1.02051 0.73334 0.73242 0.73571 1.93611 1.60786 1.76927 1.62752 1.93568 1.70574 1.50646 1.80810 1.55486 1.57343 1.22889 1.51228 1.21739 0.91397 0.91614 0.96211 1.19277 0.93435 0.95767 0.93500 1.21100 1.17118 0.93699 1.24357 0.92110 1.24983 0.97363 0.95156 0.96691 1.69958 1.35448 1.12262 1.35575 0.86548 0.81214 0.81138 0.78876 1.20466 1.21259 1.19708 1.21087 0.99159 0.89867 0.88068 0.88704 0.88007 0.87395 0.84597 0.83840 0.83217 0.74640 0.92842 0.90962 0.95490 0.95796 0.92859 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 9.73 59.84 0.58 0.88 16 2 N -0.38 -3.75 4.10 -65.56 -0.27 -4.02 16 3 N -0.08 -1.10 13.93 60.35 0.84 -0.26 16 4 N -0.03 -0.49 13.37 60.35 0.81 0.31 16 5 N -0.31 -4.88 12.02 32.32 0.39 -4.49 16 6 C 0.29 3.56 7.75 -155.22 -1.20 2.36 16 7 C -0.06 -0.65 5.86 -104.96 -0.61 -1.27 16 8 C -0.05 -0.37 8.68 -39.21 -0.34 -0.71 16 9 C -0.14 -0.92 10.03 -39.64 -0.40 -1.32 16 10 C 0.01 0.07 9.52 -39.50 -0.38 -0.30 16 11 C -0.67 -7.97 5.94 -39.64 -0.24 -8.21 16 12 S 2.69 38.54 5.73 -107.50 -0.62 37.92 16 13 O -0.95 -16.58 16.75 -57.17 -0.96 -17.54 16 14 O -0.97 -14.72 17.27 -57.17 -0.99 -15.71 16 15 N -1.11 -17.07 6.00 -10.61 -0.06 -17.13 16 16 C 0.11 2.18 6.16 -4.04 -0.02 2.16 16 17 C 0.02 0.46 5.11 -27.88 -0.14 0.31 16 18 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 22 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.04 0.49 9.18 -39.21 -0.36 0.13 16 27 H 0.09 0.15 7.68 -51.93 -0.40 -0.25 16 28 H 0.10 0.18 6.72 -51.93 -0.35 -0.17 16 29 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.14 0.46 5.14 -52.49 -0.27 0.19 16 31 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 33 H 0.42 5.86 8.65 -34.47 -0.30 5.56 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.40 7.75 -51.93 -0.40 0.99 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.16 2.15 7.56 -52.49 -0.40 1.75 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -36.79 353.65 -7.51 -44.30 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.17 Total: -0.91 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.52 Total: -18.93 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 2.44 Total: -50.83 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.95 Total: -33.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 38.54 SS G_CDS: -0.62 Total: 37.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.79 -7.51 -44.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343999529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.827 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds