Wall clock time and date at job start Tue Mar 31 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40583 * 127.39867 * 2 1 4 4 N 1.28896 * 106.86350 * 180.02562 * 3 2 1 5 5 N 1.28419 * 110.39277 * 359.97438 * 4 3 2 6 6 C 1.31629 * 110.49661 * 0.02562 * 5 4 3 7 7 C 1.48014 * 126.47903 * 179.97438 * 6 5 4 8 8 C 1.39500 * 120.13557 * 201.11190 * 7 6 5 9 9 C 1.37958 * 119.86366 * 180.02562 * 8 7 6 10 10 C 1.38364 * 120.13620 * 359.97438 * 9 8 7 11 11 C 1.38326 * 120.27088 * 0.02562 * 10 9 8 12 12 S 1.76204 * 119.92891 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40021 * 203.53751 * 12 11 10 14 14 O 1.42095 * 106.40096 * 336.45743 * 12 11 10 15 15 N 1.65597 * 107.21824 * 89.99706 * 12 11 10 16 16 C 1.46505 * 119.99873 * 64.99871 * 15 12 11 17 17 C 1.53004 * 109.47055 * 165.00160 * 16 15 12 18 18 C 1.50694 * 109.47060 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00285 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99997 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47528 * 89.99903 * 22 20 18 24 24 H 1.48507 * 109.47206 * 210.00316 * 22 20 18 25 25 H 1.48506 * 109.47002 * 329.99870 * 22 20 18 26 26 C 1.38001 * 120.13694 * 359.76022 * 11 10 9 27 27 H 1.09007 * 109.47362 * 96.36856 * 1 2 3 28 28 H 1.09000 * 109.47434 * 216.36603 * 1 2 3 29 29 H 1.08996 * 109.47189 * 336.36824 * 1 2 3 30 30 H 1.08000 * 120.06795 * 359.97438 * 8 7 6 31 31 H 1.07997 * 119.93542 * 179.97438 * 9 8 7 32 32 H 1.07997 * 119.86843 * 180.02562 * 10 9 8 33 33 H 0.97002 * 120.00444 * 245.00207 * 15 12 11 34 34 H 1.09004 * 109.47255 * 284.99581 * 16 15 12 35 35 H 1.09000 * 109.47132 * 45.00240 * 16 15 12 36 36 H 1.09004 * 109.46617 * 299.99813 * 17 16 15 37 37 H 1.08997 * 109.47527 * 59.99793 * 17 16 15 38 38 H 0.97005 * 119.99686 * 180.02562 * 21 20 18 39 39 H 1.07994 * 120.07075 * 180.27792 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3188 1.1168 0.0000 4 7 3.5258 0.6647 -0.0006 5 7 3.5226 -0.6195 -0.0004 6 6 2.2885 -1.0773 -0.0002 7 6 1.8775 -2.4993 -0.0005 8 6 0.6017 -2.8594 -0.4349 9 6 0.2242 -4.1863 -0.4323 10 6 1.1083 -5.1592 -0.0006 11 6 2.3747 -4.8084 0.4313 12 16 3.4935 -6.0548 0.9786 13 8 4.4235 -5.4099 1.8379 14 8 2.6967 -7.1590 1.3845 15 7 4.3516 -6.5587 -0.3450 16 6 5.2552 -5.6304 -1.0291 17 6 6.1868 -6.4148 -1.9552 18 6 7.1167 -5.4599 -2.6584 19 1 7.0497 -4.3996 -2.4646 20 6 8.0532 -5.9400 -3.5493 21 7 8.1345 -7.2312 -3.7858 22 14 9.2063 -4.7565 -4.4204 23 1 10.4362 -4.5756 -3.6082 24 1 9.5684 -5.3075 -5.7511 25 1 8.5310 -3.4454 -4.5947 26 6 2.7656 -3.4849 0.4293 27 1 -0.3634 -0.1140 -1.0214 28 1 -0.3634 -0.8275 0.6093 29 1 -0.3633 0.9414 0.4119 30 1 -0.0894 -2.1008 -0.7717 31 1 -0.7634 -4.4663 -0.7679 32 1 0.8084 -6.1967 -0.0007 33 1 4.2559 -7.4685 -0.6675 34 1 4.6714 -4.9216 -1.6166 35 1 5.8475 -5.0896 -0.2910 36 1 6.7706 -7.1236 -1.3678 37 1 5.5946 -6.9556 -2.6934 38 1 8.7936 -7.5689 -4.4123 39 1 3.7561 -3.2127 0.7625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343999529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:51 Heat of formation + Delta-G solvation = 41.465433 kcal Electronic energy + Delta-G solvation = -26235.903334 eV Core-core repulsion = 22307.315630 eV Total energy + Delta-G solvation = -3928.587703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.17001 -40.42885 -38.40311 -37.04291 -36.99426 -36.46668 -34.72799 -34.32796 -32.52939 -31.55078 -30.99944 -29.31858 -26.42244 -25.32734 -24.86829 -23.84286 -23.02991 -22.58695 -20.61356 -19.39120 -18.68743 -18.18265 -18.15375 -17.87906 -17.33719 -17.17046 -16.68890 -16.45119 -16.22448 -15.49124 -15.46333 -14.97959 -14.92895 -14.73790 -14.43563 -14.27939 -13.95496 -13.61773 -13.40128 -13.30361 -13.26273 -13.19195 -13.00546 -12.97770 -12.71265 -12.45670 -12.37520 -12.13529 -12.07059 -11.81824 -11.55856 -11.49314 -11.30660 -10.64062 -10.56756 -10.33460 -10.04590 -8.20415 -6.29915 -0.81617 -0.68864 -0.29888 0.22355 0.75187 1.15415 1.42566 1.43959 1.54474 1.93394 2.31688 2.43669 2.57291 2.70786 3.03393 3.14728 3.30350 3.59951 3.74748 3.79202 3.92609 4.13331 4.19175 4.20594 4.23608 4.37134 4.40044 4.53993 4.57844 4.67832 4.79232 4.85695 4.97081 4.98924 5.01684 5.13115 5.51308 5.57042 5.65607 5.82597 6.05019 6.24764 6.85527 7.23921 7.39139 8.91454 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.003866 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.881785 B = 7240.007985 C = 9429.777193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.361 5.361 3 N -0.092 5.092 4 N -0.068 5.068 5 N -0.358 5.358 6 C 0.288 3.712 7 C -0.071 4.071 8 C -0.031 4.031 9 C -0.119 4.119 10 C 0.003 3.997 11 C -0.678 4.678 12 S 2.707 3.293 13 O -0.991 6.991 14 O -0.974 6.974 15 N -1.108 6.108 16 C 0.132 3.868 17 C 0.022 3.978 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.266 1.266 26 C 0.014 3.986 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.168 0.832 33 H 0.424 0.576 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.002 0.998 37 H 0.013 0.987 38 H 0.264 0.736 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.796 8.950 6.331 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.158 5.158 3 N -0.079 5.079 4 N -0.063 5.063 5 N -0.211 5.211 6 C 0.013 3.987 7 C -0.076 4.076 8 C -0.051 4.051 9 C -0.137 4.137 10 C -0.017 4.017 11 C -0.767 4.767 12 S 2.799 3.201 13 O -0.981 6.981 14 O -0.964 6.964 15 N -0.869 5.869 16 C 0.007 3.993 17 C -0.017 4.017 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.190 1.190 26 C -0.007 4.007 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.199 0.801 31 H 0.211 0.789 32 H 0.185 0.815 33 H 0.260 0.740 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.021 0.979 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.643 9.826 7.160 28.379 hybrid contribution 0.338 0.028 -1.028 1.082 sum -25.305 9.853 6.132 27.839 Atomic orbital electron populations 1.23144 0.68692 1.08715 1.07553 1.51983 1.11424 1.02779 1.49635 1.82377 0.95303 1.08420 1.21751 1.78010 1.13689 1.03173 1.11398 1.74769 1.19756 1.03248 1.23277 1.23599 0.86380 0.91673 0.97018 1.17549 0.97240 0.84653 1.08182 1.22152 0.92517 0.99107 0.91282 1.21757 1.02044 0.90879 0.99054 1.21637 0.89646 1.02909 0.87479 1.30709 1.13890 1.11633 1.20470 1.01202 0.73037 0.73214 0.72669 1.93559 1.62766 1.77563 1.64204 1.93549 1.70383 1.51658 1.80840 1.55311 1.57622 1.22964 1.51044 1.21295 0.91257 0.91441 0.95350 1.19139 0.93626 0.95274 0.93657 1.21556 1.17773 0.94361 1.24539 0.91933 1.25827 0.99017 0.96734 0.97548 1.70066 1.36362 1.13946 1.36394 0.85544 0.79089 0.79182 0.77835 1.20090 1.20554 1.18998 1.20941 0.99013 0.90861 0.89921 0.85480 0.85256 0.85775 0.80107 0.78938 0.81473 0.73997 0.91409 0.91919 0.97930 0.96824 0.92684 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 9.73 127.77 1.24 1.39 16 2 N -0.36 -6.31 4.10 -361.34 -1.48 -7.79 16 3 N -0.09 -2.38 13.93 37.02 0.52 -1.86 16 4 N -0.07 -2.20 13.37 37.02 0.50 -1.70 16 5 N -0.36 -11.58 12.02 -51.65 -0.62 -12.21 16 6 C 0.29 6.76 7.75 136.80 1.06 7.82 16 7 C -0.07 -1.37 5.86 -20.09 -0.12 -1.49 16 8 C -0.03 -0.27 8.68 22.51 0.20 -0.08 16 9 C -0.12 -0.90 10.03 22.23 0.22 -0.68 16 10 C 0.00 0.05 9.52 22.32 0.21 0.26 16 11 C -0.68 -15.43 5.94 22.23 0.13 -15.30 16 12 S 2.71 78.96 5.73 -56.49 -0.32 78.64 16 13 O -0.99 -36.47 16.75 -128.00 -2.14 -38.62 16 14 O -0.97 -29.30 17.27 -128.00 -2.21 -31.51 16 15 N -1.11 -35.09 6.00 -187.47 -1.12 -36.21 16 16 C 0.13 5.19 6.16 86.38 0.53 5.72 16 17 C 0.02 1.08 5.11 29.85 0.15 1.24 16 18 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 20 C 0.01 0.41 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C 0.01 0.36 9.18 22.51 0.21 0.57 16 27 H 0.13 -0.38 7.68 -2.38 -0.02 -0.40 16 28 H 0.13 -0.32 6.72 -2.39 -0.02 -0.33 16 29 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.18 -0.09 5.14 -2.91 -0.01 -0.10 16 31 H 0.19 -0.30 8.06 -2.91 -0.02 -0.33 16 32 H 0.17 1.87 7.60 -2.91 -0.02 1.84 16 33 H 0.42 12.20 8.65 -96.74 -0.84 11.36 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.56 7.75 -2.39 -0.02 2.55 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 37 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 39 H 0.13 3.92 7.56 -2.91 -0.02 3.90 16 Total: -1.00 -85.27 353.65 0.23 -85.04 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.28 Total: 4.23 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.54 Total: -29.61 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -1.93 Total: -114.46 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -4.35 Total: -70.13 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 78.96 SS G_CDS: -0.32 Total: 78.64 kcal Total: -85.27 0.23 -85.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343999529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.502 kcal (2) G-P(sol) polarization free energy of solvation -85.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds