Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40056 * 125.94755 * 2 1 4 4 C 1.31889 * 108.22908 * 180.02562 * 3 2 1 5 5 C 1.47675 * 125.98577 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99742 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99683 * 0.02562 * 5 4 3 8 8 C 1.39015 * 119.99710 * 185.62415 * 7 5 4 9 9 C 1.38677 * 120.28642 * 24.83194 * 8 7 5 10 10 C 1.38207 * 120.03202 * 180.29355 * 9 8 7 11 11 C 1.38882 * 120.61694 * 359.44396 * 10 9 8 12 12 C 1.36455 * 120.58321 * 0.56212 * 11 10 9 13 13 C 1.40735 * 119.94628 * 359.71687 * 12 11 10 14 14 C 1.41055 * 120.30509 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00333 * 214.70086 * 14 13 12 16 16 C 1.39966 * 119.99573 * 34.69910 * 14 13 12 17 17 N 1.30849 * 120.00242 * 5.20978 * 16 14 13 18 18 Si 1.86797 * 119.99768 * 185.21004 * 16 14 13 19 19 H 1.48506 * 109.47197 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47328 * 119.99969 * 18 16 14 21 21 H 1.48507 * 109.46952 * 240.00019 * 18 16 14 22 22 C 1.41079 * 108.03189 * 0.22140 * 4 3 2 23 23 C 1.35589 * 107.79485 * 359.63047 * 22 4 3 24 24 O 1.35769 * 126.07821 * 180.13501 * 23 22 4 25 25 C 1.42895 * 117.00352 * 354.94359 * 24 23 22 26 26 F 1.39906 * 109.47211 * 304.94684 * 25 24 23 27 27 F 1.39906 * 109.46962 * 64.94492 * 25 24 23 28 28 H 1.08994 * 109.47586 * 95.03314 * 1 2 3 29 29 H 1.09007 * 109.46916 * 215.02802 * 1 2 3 30 30 H 1.09005 * 109.47120 * 335.02442 * 1 2 3 31 31 H 0.97000 * 120.00254 * 5.63082 * 7 5 4 32 32 H 1.08003 * 119.98571 * 0.02562 * 9 8 7 33 33 H 1.08000 * 119.68953 * 179.72339 * 10 9 8 34 34 H 1.08001 * 119.70699 * 180.30194 * 11 10 9 35 35 H 1.07995 * 120.02361 * 179.74762 * 12 11 10 36 36 H 0.96996 * 119.99802 * 180.02562 * 17 16 14 37 37 H 1.07998 * 126.10298 * 179.76856 * 22 4 3 38 38 H 1.08995 * 109.47576 * 184.94929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1338 0.0000 4 6 3.5435 0.7324 -0.0006 5 6 4.7337 1.6066 -0.0013 6 8 5.8470 1.1178 -0.0022 7 7 4.5859 2.9462 -0.0009 8 6 5.7004 3.7685 -0.1196 9 6 6.8525 3.3007 -0.7337 10 6 7.9596 4.1207 -0.8434 11 6 7.9289 5.4198 -0.3534 12 6 6.8086 5.9059 0.2555 13 6 5.6694 5.0899 0.3854 14 6 4.5071 5.5848 1.0129 15 1 3.8906 4.9250 1.6053 16 6 4.1530 6.9311 0.8679 17 7 4.8410 7.7064 0.0693 18 14 2.6979 7.6212 1.8145 19 1 2.0914 6.5475 2.6419 20 1 3.1585 8.7248 2.6949 21 1 1.6866 8.1398 0.8586 22 6 3.5512 -0.6783 -0.0061 23 6 2.2625 -1.0998 -0.0005 24 8 1.8437 -2.3912 -0.0006 25 6 2.8493 -3.3994 -0.1194 26 9 3.6142 -3.1623 -1.2666 27 9 3.6772 -3.3674 1.0079 28 1 -0.3634 -0.0902 -1.0236 29 1 -0.3633 -0.8416 0.5899 30 1 -0.3633 0.9316 0.4339 31 1 3.7018 3.3366 0.0823 32 1 6.8861 2.2936 -1.1225 33 1 8.8554 3.7492 -1.3187 34 1 8.8009 6.0495 -0.4513 35 1 6.7961 6.9162 0.6369 36 1 4.5957 8.6394 -0.0308 37 1 4.4273 -1.3099 -0.0114 38 1 2.3755 -4.3782 -0.1946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344365861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = -66.239330 kcal Electronic energy + Delta-G solvation = -28399.784129 eV Core-core repulsion = 23880.392858 eV Total energy + Delta-G solvation = -4519.391270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.60314 -47.66873 -41.56835 -39.45191 -38.42672 -37.07133 -33.83607 -33.60714 -33.39482 -29.98723 -29.56483 -28.61338 -27.22015 -26.44393 -25.19427 -23.38672 -21.61226 -21.38338 -20.56290 -19.63409 -18.65283 -18.31236 -18.26382 -17.34696 -16.90572 -16.27808 -16.15384 -16.02882 -15.13405 -14.88318 -14.54235 -14.44957 -14.29043 -14.14760 -14.03576 -13.81581 -13.76905 -13.12574 -12.98600 -12.82638 -12.65251 -12.49412 -12.36667 -12.17684 -11.71306 -11.33631 -11.16411 -11.01716 -10.93027 -10.46558 -10.19506 -9.70846 -9.41044 -9.32939 -9.24105 -8.89805 -8.70428 -7.30479 -6.90482 -6.61640 -4.39191 1.31597 1.37856 2.02785 2.61354 2.77147 2.99447 3.08036 3.09828 3.12746 3.21613 3.75096 3.86891 3.88901 3.94677 4.21769 4.27802 4.68948 4.85903 4.92334 4.98439 5.20794 5.36129 5.55495 5.65268 5.87221 6.25043 6.36145 6.53246 6.60356 6.73533 6.92254 7.08004 7.16998 7.28635 7.31752 7.68179 7.70632 7.98174 8.10164 8.15175 8.44008 8.57639 8.80264 8.86608 9.00883 10.25493 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.003313 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.730146 B = 8449.798285 C =10152.888671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.356 5.356 3 N -0.236 5.236 4 C 0.070 3.930 5 C 0.576 3.424 6 O -0.522 6.522 7 N -0.614 5.614 8 C 0.023 3.977 9 C -0.099 4.099 10 C -0.214 4.214 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.102 3.898 14 C -0.473 4.473 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.805 5.805 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.263 4.263 23 C 0.254 3.746 24 O -0.317 6.317 25 C 0.428 3.572 26 F -0.190 7.190 27 F -0.191 7.191 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.279 0.721 37 H 0.164 0.836 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 -17.796 -0.537 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.148 5.148 3 N -0.066 5.066 4 C -0.097 4.097 5 C 0.360 3.640 6 O -0.398 6.398 7 N -0.255 5.255 8 C -0.071 4.071 9 C -0.119 4.119 10 C -0.233 4.233 11 C -0.138 4.138 12 C -0.156 4.156 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.431 5.431 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.293 4.293 23 C 0.086 3.914 24 O -0.231 6.231 25 C 0.337 3.663 26 F -0.172 7.172 27 F -0.173 7.173 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.055 -17.055 -0.622 20.334 hybrid contribution -0.505 -0.135 0.368 0.639 sum -11.561 -17.191 -0.254 20.718 Atomic orbital electron populations 1.21977 0.73137 1.05175 1.03729 1.48639 1.06902 1.00689 1.58545 1.77958 1.00748 1.03932 1.24003 1.22065 0.92244 0.93888 1.01537 1.16876 0.86132 0.81925 0.79113 1.90741 1.23906 1.74776 1.50345 1.42791 1.10895 1.04137 1.67702 1.17875 0.88170 0.93376 1.07725 1.20809 0.92737 0.99429 0.98970 1.20362 0.98018 0.95136 1.09825 1.20513 0.97681 0.95075 1.00489 1.20912 0.91394 1.00442 1.02844 1.17373 0.93263 0.89168 0.90350 1.19338 1.07871 0.94551 1.28612 0.90584 1.25815 0.97653 0.96748 0.93766 1.69786 1.36980 1.06936 1.29427 0.86230 0.80916 0.79437 0.79932 1.18547 1.19876 1.20010 1.21153 0.94881 0.94951 1.18309 1.18562 0.89779 0.80502 1.02568 1.86309 1.36278 1.11682 1.88787 1.23421 0.78343 0.92077 0.72418 1.93160 1.77725 1.95246 1.51060 1.93158 1.74336 1.96760 1.53021 0.90302 0.89324 0.88267 0.75104 0.86431 0.88982 0.89235 0.86140 0.91039 0.81850 0.79380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.42 59.85 0.68 1.49 16 2 N -0.36 -4.75 4.04 -68.18 -0.28 -5.02 16 3 N -0.24 -3.97 12.27 33.34 0.41 -3.56 16 4 C 0.07 1.28 7.09 -82.91 -0.59 0.70 16 5 C 0.58 12.34 7.62 -12.41 -0.09 12.25 16 6 O -0.52 -12.30 14.06 5.29 0.07 -12.23 16 7 N -0.61 -13.78 5.11 -10.38 -0.05 -13.83 16 8 C 0.02 0.57 6.46 -83.20 -0.54 0.03 16 9 C -0.10 -2.46 8.70 -39.43 -0.34 -2.80 16 10 C -0.21 -5.04 10.04 -39.35 -0.39 -5.43 16 11 C -0.12 -2.84 9.97 -39.99 -0.40 -3.23 16 12 C -0.14 -3.53 8.57 -39.28 -0.34 -3.87 16 13 C 0.10 2.70 5.51 -106.65 -0.59 2.11 16 14 C -0.47 -12.18 8.18 -37.87 -0.31 -12.49 16 15 H 0.08 1.89 7.45 -52.49 -0.39 1.50 16 16 C 0.08 1.88 5.31 -17.32 -0.09 1.79 16 17 N -0.80 -20.53 10.98 55.55 0.61 -19.92 16 18 Si 0.91 18.52 29.56 -169.99 -5.03 13.50 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.26 -4.22 8.80 -39.45 -0.35 -4.56 16 23 C 0.25 3.40 7.46 -16.72 -0.12 3.27 16 24 O -0.32 -3.07 10.43 -19.02 -0.20 -3.27 16 25 C 0.43 3.09 5.99 101.05 0.61 3.70 16 26 F -0.19 -1.88 15.90 2.25 0.04 -1.84 16 27 F -0.19 -1.87 16.31 2.25 0.04 -1.83 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.41 8.78 7.41 -40.82 -0.30 8.48 16 32 H 0.12 2.87 5.79 -52.48 -0.30 2.57 16 33 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.12 3.20 6.48 -52.49 -0.34 2.85 16 36 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 37 H 0.16 2.59 6.64 -52.49 -0.35 2.24 16 38 H 0.19 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -32.47 341.85 -5.46 -37.93 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.36 Total: 11.98 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.87 Total: -7.05 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.69 Total: -42.34 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.12 Total: -15.50 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.67 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.47 -5.46 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344365861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.308 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds