Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40056 * 125.94755 * 2 1 4 4 C 1.31889 * 108.22908 * 180.02562 * 3 2 1 5 5 C 1.47675 * 125.98577 * 179.97438 * 4 3 2 6 6 O 1.21584 * 119.99742 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99683 * 0.02562 * 5 4 3 8 8 C 1.39015 * 119.99710 * 185.62415 * 7 5 4 9 9 C 1.38677 * 120.28642 * 24.83194 * 8 7 5 10 10 C 1.38207 * 120.03202 * 180.29355 * 9 8 7 11 11 C 1.38882 * 120.61694 * 359.44396 * 10 9 8 12 12 C 1.36455 * 120.58321 * 0.56212 * 11 10 9 13 13 C 1.40735 * 119.94628 * 359.71687 * 12 11 10 14 14 C 1.41055 * 120.30509 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00333 * 214.70086 * 14 13 12 16 16 C 1.39966 * 119.99573 * 34.69910 * 14 13 12 17 17 N 1.30849 * 120.00242 * 5.20978 * 16 14 13 18 18 Si 1.86797 * 119.99768 * 185.21004 * 16 14 13 19 19 H 1.48506 * 109.47197 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47328 * 119.99969 * 18 16 14 21 21 H 1.48507 * 109.46952 * 240.00019 * 18 16 14 22 22 C 1.41079 * 108.03189 * 0.22140 * 4 3 2 23 23 C 1.35589 * 107.79485 * 359.63047 * 22 4 3 24 24 O 1.35769 * 126.07821 * 180.13501 * 23 22 4 25 25 C 1.42895 * 117.00352 * 354.94359 * 24 23 22 26 26 F 1.39906 * 109.47211 * 304.94684 * 25 24 23 27 27 F 1.39906 * 109.46962 * 64.94492 * 25 24 23 28 28 H 1.08994 * 109.47586 * 95.03314 * 1 2 3 29 29 H 1.09007 * 109.46916 * 215.02802 * 1 2 3 30 30 H 1.09005 * 109.47120 * 335.02442 * 1 2 3 31 31 H 0.97000 * 120.00254 * 5.63082 * 7 5 4 32 32 H 1.08003 * 119.98571 * 0.02562 * 9 8 7 33 33 H 1.08000 * 119.68953 * 179.72339 * 10 9 8 34 34 H 1.08001 * 119.70699 * 180.30194 * 11 10 9 35 35 H 1.07995 * 120.02361 * 179.74762 * 12 11 10 36 36 H 0.96996 * 119.99802 * 180.02562 * 17 16 14 37 37 H 1.07998 * 126.10298 * 179.76856 * 22 4 3 38 38 H 1.08995 * 109.47576 * 184.94929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1338 0.0000 4 6 3.5435 0.7324 -0.0006 5 6 4.7337 1.6066 -0.0013 6 8 5.8470 1.1178 -0.0022 7 7 4.5859 2.9462 -0.0009 8 6 5.7004 3.7685 -0.1196 9 6 6.8525 3.3007 -0.7337 10 6 7.9596 4.1207 -0.8434 11 6 7.9289 5.4198 -0.3534 12 6 6.8086 5.9059 0.2555 13 6 5.6694 5.0899 0.3854 14 6 4.5071 5.5848 1.0129 15 1 3.8906 4.9250 1.6053 16 6 4.1530 6.9311 0.8679 17 7 4.8410 7.7064 0.0693 18 14 2.6979 7.6212 1.8145 19 1 2.0914 6.5475 2.6419 20 1 3.1585 8.7248 2.6949 21 1 1.6866 8.1398 0.8586 22 6 3.5512 -0.6783 -0.0061 23 6 2.2625 -1.0998 -0.0005 24 8 1.8437 -2.3912 -0.0006 25 6 2.8493 -3.3994 -0.1194 26 9 3.6142 -3.1623 -1.2666 27 9 3.6772 -3.3674 1.0079 28 1 -0.3634 -0.0902 -1.0236 29 1 -0.3633 -0.8416 0.5899 30 1 -0.3633 0.9316 0.4339 31 1 3.7018 3.3366 0.0823 32 1 6.8861 2.2936 -1.1225 33 1 8.8554 3.7492 -1.3187 34 1 8.8009 6.0495 -0.4513 35 1 6.7961 6.9162 0.6369 36 1 4.5957 8.6394 -0.0308 37 1 4.4273 -1.3099 -0.0114 38 1 2.3755 -4.3782 -0.1946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344365861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = -88.410606 kcal Electronic energy + Delta-G solvation = -28400.745547 eV Core-core repulsion = 23880.392858 eV Total energy + Delta-G solvation = -4520.352689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.27337 -48.35814 -42.73994 -41.14049 -39.39172 -38.87089 -35.62056 -35.48465 -34.49067 -31.55195 -31.13393 -30.31117 -28.28591 -27.33784 -26.94027 -24.81418 -23.23745 -22.55960 -22.22824 -21.05653 -19.92524 -19.26764 -19.04970 -18.99192 -18.23420 -17.61308 -17.45709 -17.18839 -16.88732 -16.16520 -16.02764 -15.91330 -15.44798 -15.22415 -15.16377 -14.79901 -14.74514 -14.53706 -14.46057 -14.18356 -13.84296 -13.69985 -13.48301 -13.37850 -13.15478 -13.12140 -12.85431 -12.75079 -12.25038 -12.15485 -12.07090 -11.57548 -11.23597 -11.08663 -10.74907 -10.43531 -9.85219 -9.26973 -8.80030 -8.48793 -6.35458 0.00442 0.45868 0.72150 0.99250 1.14623 1.41312 1.50914 1.55379 1.73063 2.20781 2.23258 2.25054 2.55892 2.80122 3.08133 3.42516 3.60120 3.69038 3.76887 4.02706 4.19868 4.37853 4.38215 4.52320 4.61230 4.65497 4.74395 4.82979 5.01666 5.05805 5.17410 5.27958 5.39829 5.72198 5.77714 5.79705 6.02868 6.14608 6.16108 6.25504 6.60359 6.68380 6.91621 6.96621 7.18040 8.41634 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.003313 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.730146 B = 8449.798285 C =10152.888671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.344 5.344 3 N -0.251 5.251 4 C 0.044 3.956 5 C 0.579 3.421 6 O -0.550 6.550 7 N -0.616 5.616 8 C 0.012 3.988 9 C -0.114 4.114 10 C -0.213 4.213 11 C -0.120 4.120 12 C -0.157 4.157 13 C 0.075 3.925 14 C -0.496 4.496 15 H 0.075 0.925 16 C 0.038 3.962 17 N -0.834 5.834 18 Si 0.983 3.017 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.266 1.266 22 C -0.282 4.282 23 C 0.273 3.727 24 O -0.304 6.304 25 C 0.418 3.582 26 F -0.207 7.207 27 F -0.208 7.208 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.415 0.585 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.287 0.713 37 H 0.158 0.842 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 -19.276 -0.387 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.136 5.136 3 N -0.083 5.083 4 C -0.121 4.121 5 C 0.364 3.636 6 O -0.427 6.427 7 N -0.258 5.258 8 C -0.082 4.082 9 C -0.134 4.134 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.177 4.177 13 C 0.071 3.929 14 C -0.527 4.527 15 H 0.093 0.907 16 C -0.176 4.176 17 N -0.461 5.461 18 Si 0.804 3.196 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.191 1.191 22 C -0.313 4.313 23 C 0.103 3.897 24 O -0.217 6.217 25 C 0.330 3.670 26 F -0.189 7.189 27 F -0.189 7.189 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.252 0.748 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.175 0.825 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -13.383 -18.554 -0.480 22.881 hybrid contribution 0.154 0.163 0.280 0.359 sum -13.228 -18.391 -0.200 22.655 Atomic orbital electron populations 1.22513 0.69868 1.06973 1.05856 1.49020 1.08432 0.99823 1.56368 1.77859 1.00422 1.05808 1.24211 1.21565 0.91793 0.94235 1.04493 1.17264 0.86995 0.81652 0.77652 1.90698 1.25447 1.75195 1.51405 1.42772 1.10332 1.04492 1.68179 1.18071 0.89148 0.93584 1.07404 1.20985 0.93284 0.99683 0.99453 1.20701 0.98638 0.94831 1.09094 1.20781 0.97969 0.95564 0.99559 1.20949 0.92338 1.00177 1.04253 1.17695 0.93972 0.89964 0.91260 1.19506 1.08145 0.95608 1.29435 0.90706 1.26643 1.00292 0.96464 0.94222 1.69846 1.38490 1.07531 1.30235 0.85140 0.77346 0.78588 0.78526 1.18294 1.19206 1.19093 1.21135 0.96214 0.93923 1.19993 1.18486 0.88778 0.82131 1.00304 1.86396 1.37093 1.09938 1.88246 1.24714 0.77988 0.93285 0.71034 1.93129 1.78369 1.95375 1.52021 1.93127 1.75071 1.96766 1.53974 0.88161 0.86367 0.87499 0.74774 0.86529 0.86119 0.86441 0.87330 0.90292 0.82474 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.42 127.77 1.46 2.57 16 2 N -0.34 -8.51 4.04 -480.56 -1.94 -10.45 16 3 N -0.25 -8.37 12.27 -48.43 -0.59 -8.97 16 4 C 0.04 1.66 7.09 42.33 0.30 1.96 16 5 C 0.58 25.82 7.62 86.74 0.66 26.48 16 6 O -0.55 -27.01 14.06 -3.98 -0.06 -27.06 16 7 N -0.62 -28.82 5.11 -305.01 -1.56 -30.38 16 8 C 0.01 0.65 6.46 38.91 0.25 0.90 16 9 C -0.11 -5.77 8.70 22.37 0.19 -5.57 16 10 C -0.21 -10.05 10.04 22.42 0.22 -9.82 16 11 C -0.12 -5.75 9.97 22.01 0.22 -5.54 16 12 C -0.16 -8.39 8.57 22.46 0.19 -8.20 16 13 C 0.07 4.09 5.51 -21.18 -0.12 3.97 16 14 C -0.50 -26.31 8.18 23.38 0.19 -26.12 16 15 H 0.07 3.85 7.45 -2.91 -0.02 3.82 16 16 C 0.04 1.86 5.31 85.26 0.45 2.32 16 17 N -0.83 -43.21 10.98 21.83 0.24 -42.97 16 18 Si 0.98 37.96 29.56 68.60 2.03 39.99 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 22 C -0.28 -9.06 8.80 22.35 0.20 -8.87 16 23 C 0.27 6.84 7.46 83.46 0.62 7.46 16 24 O -0.30 -4.93 10.43 -90.96 -0.95 -5.88 16 25 C 0.42 4.83 5.99 113.37 0.68 5.51 16 26 F -0.21 -3.76 15.90 44.97 0.72 -3.04 16 27 F -0.21 -3.72 16.31 44.97 0.73 -2.99 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 1.26 8.14 -2.38 -0.02 1.25 16 31 H 0.41 18.47 7.41 -92.71 -0.69 17.78 16 32 H 0.12 5.87 5.79 -2.91 -0.02 5.85 16 33 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.11 5.96 6.48 -2.91 -0.02 5.94 16 36 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 37 H 0.16 5.12 6.64 -2.91 -0.02 5.10 16 38 H 0.26 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: -1.00 -73.65 341.85 4.61 -69.04 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.46 Total: 35.66 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 5.53 Total: -12.95 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -3.85 Total: -92.76 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.00 Total: -32.95 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.45 Total: -6.03 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -73.65 4.61 -69.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344365861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.371 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds