Wall clock time and date at job start Tue Mar 31 2020 19:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35998 * 116.99739 * 2 1 4 4 C 1.33721 * 125.88301 * 180.02562 * 3 2 1 5 5 N 1.32145 * 115.64837 * 180.02562 * 4 3 2 6 6 C 1.29687 * 117.01518 * 359.97438 * 5 4 3 7 7 N 1.39198 * 125.40253 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00011 * 0.02562 * 7 6 5 9 9 O 1.21592 * 120.00153 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99870 * 179.97438 * 8 7 6 11 11 C 1.40180 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.40405 * 125.97223 * 0.28844 * 11 10 8 13 13 C 1.35244 * 107.86858 * 180.12136 * 12 11 10 14 14 C 1.50703 * 126.07226 * 179.88422 * 13 12 11 15 15 N 1.34968 * 107.85703 * 359.61877 * 13 12 11 16 16 C 1.46501 * 125.97276 * 180.22317 * 15 13 12 17 17 C 1.50699 * 109.47037 * 90.00109 * 16 15 13 18 18 H 1.07998 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00169 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00426 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99731 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47045 * 90.00080 * 21 19 17 23 23 H 1.48495 * 109.47413 * 210.00111 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00150 * 21 19 17 25 25 N 1.31212 * 125.97624 * 179.97438 * 11 10 8 26 26 S 1.76151 * 109.19500 * 0.24606 * 6 5 4 27 27 H 1.09000 * 109.47160 * 59.99872 * 1 2 3 28 28 H 1.08997 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47024 * 299.99744 * 1 2 3 30 30 H 1.07996 * 122.17500 * 0.02562 * 4 3 2 31 31 H 0.97000 * 119.99710 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99851 * 0.02562 * 10 8 7 33 33 H 1.08003 * 126.07100 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.47152 * 269.68666 * 14 13 12 35 35 H 1.09001 * 109.46980 * 149.68766 * 14 13 12 36 36 H 1.09004 * 109.47113 * 29.68747 * 14 13 12 37 37 H 1.09002 * 109.46930 * 209.99684 * 16 15 13 38 38 H 1.08993 * 109.47469 * 329.99735 * 16 15 13 39 39 H 0.96998 * 119.99829 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.3675 1.4183 -0.0005 5 7 3.7486 2.6836 0.0002 6 6 2.8122 3.5809 0.0007 7 7 3.0150 4.9580 0.0019 8 6 4.2679 5.4547 0.0021 9 8 5.2211 4.6999 0.0008 10 7 4.4641 6.7881 0.0027 11 6 5.7673 7.3047 0.0024 12 6 6.9527 6.5524 -0.0042 13 6 7.9929 7.4168 0.0006 14 6 9.4538 7.0471 -0.0012 15 7 7.4901 8.6693 0.0015 16 6 8.2698 9.9096 0.0016 17 6 8.5363 10.3355 -1.4191 18 1 8.1627 9.7415 -2.2401 19 6 9.2572 11.4836 -1.6710 20 7 9.4903 11.8550 -2.9108 21 14 9.9028 12.5114 -0.2510 22 1 11.2597 12.0391 0.1251 23 1 9.9711 13.9366 -0.6624 24 1 8.9910 12.3754 0.9132 25 7 6.0925 8.5759 0.0025 26 16 1.2431 2.7804 0.0074 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0769 0.6040 -0.0013 31 1 2.2545 5.5602 0.0025 32 1 3.7037 7.3902 0.0034 33 1 7.0218 5.4746 -0.0104 34 1 9.8073 6.9578 1.0260 35 1 10.0237 7.8209 -0.5156 36 1 9.5872 6.0953 -0.5154 37 1 7.7099 10.6906 0.5161 38 1 9.2168 9.7434 0.5149 39 1 9.9971 12.6629 -3.0879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351842596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:26 Heat of formation + Delta-G solvation = 92.204845 kcal Electronic energy + Delta-G solvation = -25279.328888 eV Core-core repulsion = 21352.941410 eV Total energy + Delta-G solvation = -3926.387477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08891 -40.33642 -39.62124 -38.43068 -35.23018 -34.81444 -33.29471 -31.55351 -31.10621 -29.73114 -27.48080 -26.94889 -26.40195 -25.14813 -23.16928 -22.23706 -20.86351 -20.10259 -19.56103 -19.43112 -18.07099 -17.37726 -17.11585 -16.53391 -16.40425 -15.99377 -15.86846 -15.29087 -14.81413 -14.66645 -14.58801 -14.21733 -14.11544 -13.75054 -13.21005 -12.79305 -12.57251 -12.44734 -12.36898 -12.16597 -11.99980 -11.60065 -11.56784 -11.25527 -10.83936 -10.74449 -10.55924 -10.36369 -9.98807 -9.91366 -9.60566 -9.59425 -9.55367 -8.78804 -8.19881 -7.99717 -7.48171 -6.26417 -4.29691 0.28694 0.48367 0.90477 2.06568 2.41407 2.68137 2.73484 3.04757 3.13801 3.20062 3.23200 3.29646 3.71794 3.93332 4.21366 4.48641 4.49643 4.57433 4.90017 5.01546 5.18019 5.29823 5.49050 5.60951 5.81613 5.89739 6.04294 6.05122 6.25090 6.37708 6.44642 6.47215 6.57482 6.70305 6.81300 7.28589 7.33896 7.49844 7.76430 7.85204 8.30907 8.35658 8.54614 8.79388 9.28676 10.86002 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.001989 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.125274 B =14074.174621 C =14403.460133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.272 6.272 3 C -0.024 4.024 4 C 0.019 3.981 5 N -0.432 5.432 6 C 0.316 3.684 7 N -0.638 5.638 8 C 0.708 3.292 9 O -0.501 6.501 10 N -0.636 5.636 11 C 0.284 3.716 12 C -0.284 4.284 13 C 0.097 3.903 14 C -0.091 4.091 15 N -0.316 5.316 16 C 0.232 3.768 17 C -0.541 4.541 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.886 5.886 21 Si 0.872 3.128 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 N -0.317 5.317 26 S 0.042 5.958 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.185 0.815 31 H 0.420 0.580 32 H 0.408 0.592 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 -19.713 8.034 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.185 6.185 3 C -0.190 4.190 4 C -0.130 4.130 5 N -0.152 5.152 6 C -0.056 4.056 7 N -0.293 5.293 8 C 0.404 3.596 9 O -0.368 6.368 10 N -0.287 5.287 11 C 0.031 3.969 12 C -0.315 4.315 13 C -0.034 4.034 14 C -0.149 4.149 15 N -0.099 5.099 16 C 0.113 3.887 17 C -0.580 4.580 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.523 5.523 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 N -0.148 5.148 26 S 0.287 5.713 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.202 0.798 31 H 0.257 0.743 32 H 0.243 0.757 33 H 0.181 0.819 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.513 -18.611 7.922 27.420 hybrid contribution -0.034 0.091 0.461 0.471 sum -18.547 -18.520 8.383 27.518 Atomic orbital electron populations 1.23303 0.77310 1.04997 1.01928 1.86008 1.21383 1.21289 1.89824 1.24660 0.94673 0.87472 1.12185 1.21203 0.91572 0.93286 1.06919 1.66740 1.31421 0.98901 1.18181 1.23447 0.89540 0.88323 1.04275 1.41933 1.08710 1.02188 1.76469 1.15521 0.82744 0.82075 0.79261 1.91026 1.37966 1.56444 1.51383 1.41206 1.06263 1.04810 1.76399 1.18554 0.83847 0.91606 1.02907 1.21282 0.88471 1.01147 1.20621 1.21059 0.96785 0.85036 1.00547 1.20414 0.89052 1.02961 1.02503 1.48508 1.01841 1.06264 1.53249 1.19997 0.89601 0.79422 0.99709 1.21184 1.36024 1.10349 0.90400 0.90073 1.24810 0.95229 0.96709 0.95783 1.69872 1.39245 1.24512 1.18658 0.86908 0.80009 0.80415 0.82839 1.19603 1.20524 1.18796 1.77246 0.92770 1.15002 1.29734 1.85052 1.08922 1.00150 1.77214 0.92193 0.87175 0.92225 0.79848 0.74309 0.75651 0.81884 0.91038 0.89836 0.90264 0.93204 0.93597 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.31 101.05 1.04 1.14 16 2 O -0.27 -2.27 10.58 -19.73 -0.21 -2.48 16 3 C -0.02 -0.23 7.31 29.15 0.21 -0.02 16 4 C 0.02 0.22 11.28 -19.00 -0.21 0.00 16 5 N -0.43 -6.05 8.70 -13.68 -0.12 -6.17 16 6 C 0.32 3.63 8.29 -87.10 -0.72 2.90 16 7 N -0.64 -6.64 5.42 -16.14 -0.09 -6.73 16 8 C 0.71 10.41 8.50 -86.92 -0.74 9.67 16 9 O -0.50 -9.34 12.14 5.28 0.06 -9.27 16 10 N -0.64 -9.37 5.45 -15.51 -0.08 -9.46 16 11 C 0.28 5.62 8.11 -154.37 -1.25 4.37 16 12 C -0.28 -5.79 9.52 -39.83 -0.38 -6.16 16 13 C 0.10 1.99 6.93 -82.28 -0.57 1.42 16 14 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 15 N -0.32 -7.26 3.59 -58.33 -0.21 -7.47 16 16 C 0.23 5.52 4.88 -5.19 -0.03 5.50 16 17 C -0.54 -15.05 9.94 -34.44 -0.34 -15.39 16 18 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 21 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 25 N -0.32 -7.06 12.59 31.44 0.40 -6.67 16 26 S 0.04 0.33 22.34 -107.50 -2.40 -2.07 16 27 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.42 2.50 8.84 -40.82 -0.36 2.13 16 32 H 0.41 4.47 8.84 -40.82 -0.36 4.11 16 33 H 0.16 3.30 5.91 -52.48 -0.31 2.99 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 38 H 0.05 1.00 7.08 -51.93 -0.37 0.64 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -36.40 354.00 -8.24 -44.63 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.29 Total: 6.09 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.73 Total: 4.35 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.67 Total: -61.92 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.14 Total: -11.75 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.40 Total: -2.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.40 -8.24 -44.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351842596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.840 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds