Wall clock time and date at job start Tue Mar 31 2020 19:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35998 * 116.99739 * 2 1 4 4 C 1.33721 * 125.88301 * 180.02562 * 3 2 1 5 5 N 1.32145 * 115.64837 * 180.02562 * 4 3 2 6 6 C 1.29687 * 117.01518 * 359.97438 * 5 4 3 7 7 N 1.39198 * 125.40253 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00011 * 0.02562 * 7 6 5 9 9 O 1.21592 * 120.00153 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99870 * 179.97438 * 8 7 6 11 11 C 1.40180 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.40405 * 125.97223 * 0.28844 * 11 10 8 13 13 C 1.35244 * 107.86858 * 180.12136 * 12 11 10 14 14 C 1.50703 * 126.07226 * 179.88422 * 13 12 11 15 15 N 1.34968 * 107.85703 * 359.61877 * 13 12 11 16 16 C 1.46501 * 125.97276 * 180.22317 * 15 13 12 17 17 C 1.50699 * 109.47037 * 90.00109 * 16 15 13 18 18 H 1.07998 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00169 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00426 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99731 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47045 * 90.00080 * 21 19 17 23 23 H 1.48495 * 109.47413 * 210.00111 * 21 19 17 24 24 H 1.48503 * 109.47143 * 330.00150 * 21 19 17 25 25 N 1.31212 * 125.97624 * 179.97438 * 11 10 8 26 26 S 1.76151 * 109.19500 * 0.24606 * 6 5 4 27 27 H 1.09000 * 109.47160 * 59.99872 * 1 2 3 28 28 H 1.08997 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47024 * 299.99744 * 1 2 3 30 30 H 1.07996 * 122.17500 * 0.02562 * 4 3 2 31 31 H 0.97000 * 119.99710 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99851 * 0.02562 * 10 8 7 33 33 H 1.08003 * 126.07100 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.47152 * 269.68666 * 14 13 12 35 35 H 1.09001 * 109.46980 * 149.68766 * 14 13 12 36 36 H 1.09004 * 109.47113 * 29.68747 * 14 13 12 37 37 H 1.09002 * 109.46930 * 209.99684 * 16 15 13 38 38 H 1.08993 * 109.47469 * 329.99735 * 16 15 13 39 39 H 0.96998 * 119.99829 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.3675 1.4183 -0.0005 5 7 3.7486 2.6836 0.0002 6 6 2.8122 3.5809 0.0007 7 7 3.0150 4.9580 0.0019 8 6 4.2679 5.4547 0.0021 9 8 5.2211 4.6999 0.0008 10 7 4.4641 6.7881 0.0027 11 6 5.7673 7.3047 0.0024 12 6 6.9527 6.5524 -0.0042 13 6 7.9929 7.4168 0.0006 14 6 9.4538 7.0471 -0.0012 15 7 7.4901 8.6693 0.0015 16 6 8.2698 9.9096 0.0016 17 6 8.5363 10.3355 -1.4191 18 1 8.1627 9.7415 -2.2401 19 6 9.2572 11.4836 -1.6710 20 7 9.4903 11.8550 -2.9108 21 14 9.9028 12.5114 -0.2510 22 1 11.2597 12.0391 0.1251 23 1 9.9711 13.9366 -0.6624 24 1 8.9910 12.3754 0.9132 25 7 6.0925 8.5759 0.0025 26 16 1.2431 2.7804 0.0074 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0769 0.6040 -0.0013 31 1 2.2545 5.5602 0.0025 32 1 3.7037 7.3902 0.0034 33 1 7.0218 5.4746 -0.0104 34 1 9.8073 6.9578 1.0260 35 1 10.0237 7.8209 -0.5156 36 1 9.5872 6.0953 -0.5154 37 1 7.7099 10.6906 0.5161 38 1 9.2168 9.7434 0.5149 39 1 9.9971 12.6629 -3.0879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351842596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:25 Heat of formation + Delta-G solvation = 65.349526 kcal Electronic energy + Delta-G solvation = -25280.493422 eV Core-core repulsion = 21352.941410 eV Total energy + Delta-G solvation = -3927.552011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.45295 -41.52672 -40.51457 -39.22541 -36.49772 -35.99901 -35.20925 -33.17870 -32.78971 -30.47127 -29.06435 -27.91522 -27.69712 -26.10308 -24.62524 -23.65051 -22.07124 -21.37475 -20.65774 -20.50340 -19.21503 -19.18019 -18.25508 -17.55036 -17.28365 -17.22912 -16.84996 -16.73826 -16.29673 -15.86284 -15.60660 -15.49222 -14.99639 -14.90507 -14.88287 -14.45808 -13.87919 -13.74304 -13.66962 -13.28886 -13.21500 -12.88604 -12.76320 -12.54223 -12.29259 -12.25674 -11.82976 -11.69327 -11.58334 -11.44986 -11.39581 -10.87826 -10.55101 -10.26964 -9.61752 -9.18446 -8.87537 -8.38764 -6.49927 -0.49452 -0.32114 0.14768 0.92707 1.00488 1.36825 1.39203 1.49277 1.51002 1.86636 1.88815 2.17590 2.28341 2.34320 2.77259 2.93658 3.57774 3.84240 4.08929 4.16536 4.27506 4.40575 4.42176 4.56837 4.66515 4.68539 4.69824 4.78443 4.83833 4.97686 5.05159 5.13872 5.24694 5.27895 5.50090 5.81466 5.85492 6.00196 6.35954 6.38913 6.54159 6.81204 7.02748 7.13998 7.24079 8.77820 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.001989 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.125274 B =14074.174621 C =14403.460133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.283 6.283 3 C -0.018 4.018 4 C -0.012 4.012 5 N -0.475 5.475 6 C 0.278 3.722 7 N -0.618 5.618 8 C 0.710 3.290 9 O -0.542 6.542 10 N -0.624 5.624 11 C 0.295 3.705 12 C -0.298 4.298 13 C 0.092 3.908 14 C -0.089 4.089 15 N -0.342 5.342 16 C 0.242 3.758 17 C -0.550 4.550 18 H 0.023 0.977 19 C 0.021 3.979 20 N -0.937 5.937 21 Si 0.951 3.049 22 H -0.251 1.251 23 H -0.279 1.279 24 H -0.243 1.243 25 N -0.350 5.350 26 S 0.138 5.862 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.070 0.930 30 H 0.186 0.814 31 H 0.441 0.559 32 H 0.426 0.574 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.500 -20.350 10.055 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.196 6.196 3 C -0.184 4.184 4 C -0.161 4.161 5 N -0.196 5.196 6 C -0.092 4.092 7 N -0.275 5.275 8 C 0.406 3.594 9 O -0.412 6.412 10 N -0.278 5.278 11 C 0.039 3.961 12 C -0.328 4.328 13 C -0.038 4.038 14 C -0.147 4.147 15 N -0.124 5.124 16 C 0.122 3.878 17 C -0.588 4.588 18 H 0.042 0.958 19 C -0.179 4.179 20 N -0.576 5.576 21 Si 0.772 3.228 22 H -0.175 1.175 23 H -0.204 1.204 24 H -0.167 1.167 25 N -0.181 5.181 26 S 0.383 5.617 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.089 0.911 30 H 0.203 0.797 31 H 0.282 0.718 32 H 0.265 0.735 33 H 0.181 0.819 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.332 -19.277 9.949 29.732 hybrid contribution 0.248 0.024 -0.265 0.364 sum -20.083 -19.253 9.685 29.459 Atomic orbital electron populations 1.23685 0.75082 1.07112 1.02886 1.86025 1.23629 1.20722 1.89227 1.24883 0.94825 0.89009 1.09701 1.21236 0.92814 0.92843 1.09193 1.66665 1.33986 1.00162 1.18827 1.23707 0.91691 0.88163 1.05673 1.41566 1.07846 1.02532 1.75588 1.15642 0.83646 0.81475 0.78602 1.90995 1.39862 1.57301 1.53092 1.41120 1.05163 1.05401 1.76082 1.18809 0.85684 0.90886 1.00681 1.21421 0.88954 1.01167 1.21298 1.21719 0.98674 0.84321 0.99082 1.20546 0.86442 1.03193 1.04501 1.48425 1.02238 1.06526 1.55207 1.19787 0.90865 0.80172 0.97005 1.21256 1.36161 1.10230 0.91192 0.95817 1.25838 0.95096 0.97892 0.99039 1.70036 1.40470 1.25462 1.21611 0.85677 0.80285 0.77837 0.79024 1.17538 1.20425 1.16659 1.77160 0.92874 1.16297 1.31724 1.84666 1.04451 0.97227 1.75404 0.91210 0.84762 0.91115 0.79696 0.71755 0.73507 0.81857 0.87983 0.91212 0.88508 0.93059 0.90960 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.31 113.37 1.17 1.21 16 2 O -0.28 -4.15 10.58 -93.53 -0.99 -5.14 16 3 C -0.02 -0.31 7.31 66.79 0.49 0.18 16 4 C -0.01 -0.28 11.28 83.62 0.94 0.66 16 5 N -0.48 -13.43 8.70 -197.18 -1.72 -15.15 16 6 C 0.28 6.12 8.29 179.12 1.49 7.60 16 7 N -0.62 -12.23 5.42 -323.25 -1.75 -13.98 16 8 C 0.71 20.78 8.50 179.06 1.52 22.30 16 9 O -0.54 -20.62 12.14 -4.00 -0.05 -20.67 16 10 N -0.62 -18.24 5.45 -321.24 -1.75 -19.99 16 11 C 0.29 11.76 8.11 133.32 1.08 12.84 16 12 C -0.30 -12.28 9.52 22.11 0.21 -12.07 16 13 C 0.09 3.82 6.93 41.39 0.29 4.10 16 14 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 15 N -0.34 -15.85 3.59 -338.45 -1.22 -17.07 16 16 C 0.24 11.47 4.88 85.63 0.42 11.88 16 17 C -0.55 -31.56 9.94 25.60 0.25 -31.31 16 18 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 19 C 0.02 1.18 5.47 84.66 0.46 1.64 16 20 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 21 Si 0.95 40.66 27.47 68.60 1.88 42.55 16 22 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 25 N -0.35 -15.83 12.59 -54.44 -0.69 -16.51 16 26 S 0.14 1.82 22.34 -56.49 -1.26 0.55 16 27 H 0.07 0.29 8.09 -2.39 -0.02 0.27 16 28 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.07 0.28 8.08 -2.38 -0.02 0.26 16 30 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.44 4.36 8.84 -92.71 -0.82 3.54 16 32 H 0.43 8.97 8.84 -92.71 -0.82 8.15 16 33 H 0.16 6.77 5.91 -2.91 -0.02 6.75 16 34 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.07 2.47 7.71 -2.39 -0.02 2.46 16 36 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 37 H 0.05 2.41 7.20 -2.39 -0.02 2.39 16 38 H 0.07 3.03 7.08 -2.39 -0.02 3.02 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -83.55 354.00 1.23 -82.32 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.56 Total: 23.00 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 9.03 Total: 16.86 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -6.82 Total: -139.47 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -1.04 Total: -25.81 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.88 Total: 42.55 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.26 Total: 0.55 kcal Total: -83.55 1.23 -82.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351842596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.668 kcal (2) G-P(sol) polarization free energy of solvation -83.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds