Wall clock time and date at job start Tue Mar 31 2020 19:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48492 * 109.47480 * 270.00237 * 3 2 1 5 5 H 1.48503 * 109.47053 * 30.00278 * 3 2 1 6 6 H 1.48506 * 109.47382 * 150.00026 * 3 2 1 7 7 C 1.37873 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00182 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97335 * 125.01945 * 10 9 7 12 12 C 1.35238 * 107.85791 * 179.69174 * 11 10 9 13 13 C 1.40410 * 107.87069 * 0.43040 * 12 11 10 14 14 N 1.40154 * 125.97816 * 179.82992 * 13 12 11 15 15 C 1.34782 * 119.99813 * 359.71342 * 14 13 12 16 16 O 1.21287 * 119.99864 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99926 * 180.02562 * 15 14 13 18 18 O 1.42906 * 109.47292 * 179.97438 * 17 15 14 19 19 C 1.35895 * 116.99953 * 179.97438 * 18 17 15 20 20 C 1.38702 * 120.03370 * 359.72914 * 19 18 17 21 21 C 1.38381 * 119.97102 * 179.76502 * 20 19 18 22 22 F 1.35101 * 119.98486 * 180.25244 * 21 20 19 23 23 C 1.38457 * 120.02761 * 0.48520 * 21 20 19 24 24 C 1.38455 * 120.05814 * 359.76617 * 23 21 20 25 25 F 1.35107 * 119.98256 * 179.97438 * 24 23 21 26 26 C 1.38377 * 120.03201 * 0.02562 * 24 23 21 27 27 N 1.31222 * 108.04800 * 359.56013 * 13 12 11 28 28 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47019 * 60.00058 * 9 7 2 30 30 H 1.08997 * 109.47188 * 300.00049 * 9 7 2 31 31 H 1.07994 * 126.06944 * 359.97438 * 11 10 9 32 32 H 1.08004 * 126.06708 * 180.25603 * 12 11 10 33 33 H 0.96995 * 120.00253 * 179.70899 * 14 13 12 34 34 H 1.08998 * 109.47471 * 59.99932 * 17 15 14 35 35 H 1.08999 * 109.47314 * 299.99967 * 17 15 14 36 36 H 1.08007 * 120.01485 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.96625 * 179.74991 * 23 21 20 38 38 H 1.08000 * 120.01621 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8548 -3.1131 -0.8975 12 6 5.0612 -4.4037 -0.5501 13 6 4.2957 -4.6690 0.5967 14 7 4.2255 -5.8937 1.2747 15 6 4.9312 -6.9520 0.8291 16 8 5.6267 -6.8446 -0.1588 17 6 4.8553 -8.2689 1.5577 18 8 5.6846 -9.2272 0.8973 19 6 5.7299 -10.4760 1.4314 20 6 4.9958 -10.7709 2.5706 21 6 5.0390 -12.0443 3.1105 22 9 4.3200 -12.3333 4.2172 23 6 5.8226 -13.0211 2.5197 24 6 6.5600 -12.7266 1.3855 25 9 7.3245 -13.6808 0.8106 26 6 6.5152 -11.4552 0.8411 27 7 3.6620 -3.5682 0.9261 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 5.2990 -2.6023 -1.7389 32 1 5.6994 -5.1066 -1.0651 33 1 3.6691 -5.9796 2.0645 34 1 3.8244 -8.6229 1.5621 35 1 5.1984 -8.1368 2.5838 36 1 4.3879 -10.0079 3.0342 37 1 5.8588 -14.0135 2.9443 38 1 7.0909 -11.2257 -0.0434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354440299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:22 Heat of formation + Delta-G solvation = -38.275900 kcal Electronic energy + Delta-G solvation = -26621.672318 eV Core-core repulsion = 22103.493633 eV Total energy + Delta-G solvation = -4518.178685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.53622 -49.50904 -41.09573 -40.60129 -39.30105 -37.51577 -34.98301 -33.39179 -31.65066 -31.13658 -30.70851 -29.57445 -28.91206 -27.02260 -23.69204 -23.47114 -22.68957 -21.78623 -20.37718 -19.86924 -19.37039 -18.06608 -17.29641 -17.17882 -17.03092 -16.89282 -16.81292 -16.40358 -16.35533 -16.00941 -15.80464 -15.48832 -14.99861 -14.86169 -14.71407 -14.35870 -13.83235 -13.69363 -13.14577 -12.81497 -12.71014 -12.60761 -12.46466 -12.42818 -12.23353 -12.16013 -11.44294 -11.22978 -10.83208 -10.75106 -10.19871 -10.08155 -9.81478 -9.59925 -9.39796 -9.01581 -8.81418 -8.32308 -7.66221 -6.28197 -4.31046 0.36658 0.51957 1.85306 2.03254 2.71078 2.79716 2.85980 3.12124 3.18701 3.20854 3.37508 3.51125 3.60611 3.83703 4.18383 4.18993 4.23112 4.32413 4.35238 4.48994 4.53164 4.63559 4.99229 5.26036 5.32423 5.34189 5.41579 5.49963 5.57392 5.99454 6.01219 6.27385 6.32903 6.41958 6.58555 6.60808 7.14510 7.19216 7.40927 7.71431 7.96299 8.27066 8.43564 8.80699 9.26404 10.84377 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.001761 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.223150 B =15897.175790 C =16631.009425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.316 5.316 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.259 3.741 14 N -0.625 5.625 15 C 0.522 3.478 16 O -0.492 6.492 17 C 0.042 3.958 18 O -0.275 6.275 19 C 0.194 3.806 20 C -0.260 4.260 21 C 0.174 3.826 22 F -0.126 7.126 23 C -0.231 4.231 24 C 0.173 3.827 25 F -0.124 7.124 26 C -0.195 4.195 27 N -0.293 5.293 28 H 0.269 0.731 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.414 0.586 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.552 -23.200 5.560 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.315 4.315 13 C 0.006 3.994 14 N -0.274 5.274 15 C 0.305 3.695 16 O -0.363 6.363 17 C -0.036 4.036 18 O -0.186 6.186 19 C 0.147 3.853 20 C -0.279 4.279 21 C 0.154 3.846 22 F -0.104 7.104 23 C -0.251 4.251 24 C 0.153 3.847 25 F -0.102 7.102 26 C -0.215 4.215 27 N -0.124 5.124 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.150 -22.304 5.505 25.988 hybrid contribution 0.280 0.356 0.153 0.478 sum 12.430 -21.948 5.658 25.850 Atomic orbital electron populations 1.69866 1.06160 1.27368 1.48964 1.24833 0.94882 0.98825 0.94212 0.86904 0.80418 0.83809 0.78954 1.19682 1.20497 1.18867 1.21088 0.87714 0.95723 1.52896 0.89639 1.20083 0.97528 0.72832 0.98315 1.48650 1.32375 1.10277 1.18515 1.22581 0.95720 0.94657 0.96645 1.21549 1.11282 0.96963 1.01667 1.18995 0.99304 0.86326 0.94812 1.42121 1.47285 1.07351 1.30652 1.19764 0.80362 0.84090 0.85248 1.90715 1.38043 1.82916 1.24632 1.22513 0.96792 0.87261 0.97067 1.86197 1.63811 1.17035 1.51516 1.18208 0.92330 0.84521 0.90236 1.21270 1.08241 0.98026 1.00403 1.16857 0.91297 0.92580 0.83857 1.91564 1.75314 1.93887 1.49644 1.20927 1.03124 1.01859 0.99170 1.16757 0.90961 0.85322 0.91645 1.91569 1.72766 1.62365 1.83488 1.20327 1.05439 0.90731 1.04982 1.77398 1.23528 0.95491 1.15938 0.92124 0.93921 0.93223 0.81209 0.82042 0.75036 0.87779 0.87847 0.83141 0.83170 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 7 C -0.54 -14.75 9.79 -34.44 -0.34 -15.09 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.23 5.30 5.33 -5.19 -0.03 5.27 16 10 N -0.32 -6.87 3.67 -62.56 -0.23 -7.10 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.21 9.61 -39.83 -0.38 -5.59 16 13 C 0.26 4.79 8.11 -154.39 -1.25 3.53 16 14 N -0.62 -8.30 5.45 -11.13 -0.06 -8.37 16 15 C 0.52 6.44 7.87 -10.99 -0.09 6.35 16 16 O -0.49 -8.01 13.63 -14.36 -0.20 -8.21 16 17 C 0.04 0.32 5.22 36.00 0.19 0.51 16 18 O -0.27 -2.66 9.67 -39.32 -0.38 -3.04 16 19 C 0.19 1.57 6.68 -39.24 -0.26 1.31 16 20 C -0.26 -1.75 9.01 -39.36 -0.35 -2.10 16 21 C 0.17 1.25 7.30 -39.45 -0.29 0.96 16 22 F -0.13 -0.98 17.27 2.25 0.04 -0.94 16 23 C -0.23 -1.57 10.00 -39.42 -0.39 -1.97 16 24 C 0.17 1.30 7.30 -39.45 -0.29 1.01 16 25 F -0.12 -0.99 17.27 2.25 0.04 -0.95 16 26 C -0.20 -1.53 9.96 -39.36 -0.39 -1.93 16 27 N -0.29 -6.35 12.42 31.44 0.39 -5.96 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 30 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 31 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.16 2.88 5.92 -52.48 -0.31 2.57 16 33 H 0.41 4.09 8.82 -40.82 -0.36 3.73 16 34 H 0.10 0.50 7.67 -51.93 -0.40 0.10 16 35 H 0.10 0.46 7.65 -51.93 -0.40 0.07 16 36 H 0.15 0.68 6.30 -52.48 -0.33 0.35 16 37 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -34.27 346.23 -6.66 -40.94 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.42 Total: 3.65 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -4.17 Total: -4.94 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.87 Total: -46.74 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.58 Total: -11.25 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.08 Total: -1.89 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.27 -6.66 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354440299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.662 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds