Wall clock time and date at job start Tue Mar 31 2020 19:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48492 * 109.47480 * 270.00237 * 3 2 1 5 5 H 1.48503 * 109.47053 * 30.00278 * 3 2 1 6 6 H 1.48506 * 109.47382 * 150.00026 * 3 2 1 7 7 C 1.37873 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00182 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97335 * 125.01945 * 10 9 7 12 12 C 1.35238 * 107.85791 * 179.69174 * 11 10 9 13 13 C 1.40410 * 107.87069 * 0.43040 * 12 11 10 14 14 N 1.40154 * 125.97816 * 179.82992 * 13 12 11 15 15 C 1.34782 * 119.99813 * 359.71342 * 14 13 12 16 16 O 1.21287 * 119.99864 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99926 * 180.02562 * 15 14 13 18 18 O 1.42906 * 109.47292 * 179.97438 * 17 15 14 19 19 C 1.35895 * 116.99953 * 179.97438 * 18 17 15 20 20 C 1.38702 * 120.03370 * 359.72914 * 19 18 17 21 21 C 1.38381 * 119.97102 * 179.76502 * 20 19 18 22 22 F 1.35101 * 119.98486 * 180.25244 * 21 20 19 23 23 C 1.38457 * 120.02761 * 0.48520 * 21 20 19 24 24 C 1.38455 * 120.05814 * 359.76617 * 23 21 20 25 25 F 1.35107 * 119.98256 * 179.97438 * 24 23 21 26 26 C 1.38377 * 120.03201 * 0.02562 * 24 23 21 27 27 N 1.31222 * 108.04800 * 359.56013 * 13 12 11 28 28 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47019 * 60.00058 * 9 7 2 30 30 H 1.08997 * 109.47188 * 300.00049 * 9 7 2 31 31 H 1.07994 * 126.06944 * 359.97438 * 11 10 9 32 32 H 1.08004 * 126.06708 * 180.25603 * 12 11 10 33 33 H 0.96995 * 120.00253 * 179.70899 * 14 13 12 34 34 H 1.08998 * 109.47471 * 59.99932 * 17 15 14 35 35 H 1.08999 * 109.47314 * 299.99967 * 17 15 14 36 36 H 1.08007 * 120.01485 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.96625 * 179.74991 * 23 21 20 38 38 H 1.08000 * 120.01621 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8548 -3.1131 -0.8975 12 6 5.0612 -4.4037 -0.5501 13 6 4.2957 -4.6690 0.5967 14 7 4.2255 -5.8937 1.2747 15 6 4.9312 -6.9520 0.8291 16 8 5.6267 -6.8446 -0.1588 17 6 4.8553 -8.2689 1.5577 18 8 5.6846 -9.2272 0.8973 19 6 5.7299 -10.4760 1.4314 20 6 4.9958 -10.7709 2.5706 21 6 5.0390 -12.0443 3.1105 22 9 4.3200 -12.3333 4.2172 23 6 5.8226 -13.0211 2.5197 24 6 6.5600 -12.7266 1.3855 25 9 7.3245 -13.6808 0.8106 26 6 6.5152 -11.4552 0.8411 27 7 3.6620 -3.5682 0.9261 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 5.2990 -2.6023 -1.7389 32 1 5.6994 -5.1066 -1.0651 33 1 3.6691 -5.9796 2.0645 34 1 3.8244 -8.6229 1.5621 35 1 5.1984 -8.1368 2.5838 36 1 4.3879 -10.0079 3.0342 37 1 5.8588 -14.0135 2.9443 38 1 7.0909 -11.2257 -0.0434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354440299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:21 Heat of formation + Delta-G solvation = -60.397090 kcal Electronic energy + Delta-G solvation = -26622.631564 eV Core-core repulsion = 22103.493633 eV Total energy + Delta-G solvation = -4519.137932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.11066 -50.08278 -42.30414 -41.47587 -40.33865 -38.15604 -36.28668 -35.23012 -33.24679 -31.85299 -31.28861 -31.02881 -29.87682 -28.58236 -24.83497 -24.09551 -23.91785 -22.90473 -21.82511 -21.07888 -20.01645 -19.10511 -18.84499 -18.17877 -17.99810 -17.68530 -17.42409 -17.35133 -16.99010 -16.87237 -16.68748 -16.38350 -16.32902 -15.88724 -15.59025 -15.38056 -15.21138 -14.84162 -14.58086 -14.31458 -13.90536 -13.85545 -13.39953 -13.26276 -12.99969 -12.95759 -12.77842 -12.52531 -12.33571 -11.99051 -11.83397 -11.65224 -11.48102 -10.96717 -10.86691 -9.94463 -9.80322 -9.57782 -9.14881 -8.37197 -6.47466 -0.18144 -0.03398 0.85401 0.96237 1.36467 1.38466 1.40066 1.49573 1.82357 2.15884 2.24798 2.29261 2.44448 2.84121 2.95518 3.22362 3.39823 3.72250 3.75168 3.83413 3.92077 4.01446 4.04367 4.09046 4.20169 4.60146 4.71633 4.72857 4.77921 4.85664 4.88388 4.91182 4.95225 5.10399 5.24655 5.46138 5.84178 5.98335 6.00313 6.19560 6.39331 6.58267 6.89389 7.04131 7.15542 8.79667 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.001761 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.223150 B =15897.175790 C =16631.009425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.028 0.972 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.061 3.939 12 C -0.296 4.296 13 C 0.266 3.734 14 N -0.618 5.618 15 C 0.522 3.478 16 O -0.534 6.534 17 C 0.048 3.952 18 O -0.300 6.300 19 C 0.186 3.814 20 C -0.249 4.249 21 C 0.166 3.834 22 F -0.129 7.129 23 C -0.226 4.226 24 C 0.165 3.835 25 F -0.129 7.129 26 C -0.203 4.203 27 N -0.343 5.343 28 H 0.272 0.728 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.210 0.790 32 H 0.167 0.833 33 H 0.430 0.570 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.165 0.835 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.135 -23.146 6.182 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.087 4.087 12 C -0.327 4.327 13 C 0.011 3.989 14 N -0.269 5.269 15 C 0.309 3.691 16 O -0.408 6.408 17 C -0.030 4.030 18 O -0.212 6.212 19 C 0.139 3.861 20 C -0.268 4.268 21 C 0.146 3.854 22 F -0.107 7.107 23 C -0.245 4.245 24 C 0.145 3.855 25 F -0.108 7.108 26 C -0.222 4.222 27 N -0.173 5.173 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.185 0.815 33 H 0.268 0.732 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.743 -22.303 6.150 26.910 hybrid contribution -0.229 0.124 -0.046 0.265 sum 13.514 -22.179 6.105 26.679 Atomic orbital electron populations 1.70043 1.08542 1.28791 1.50639 1.25912 0.95768 1.03522 0.93276 0.85627 0.79535 0.77282 0.80001 1.17878 1.20708 1.16175 1.21222 0.90467 0.93744 1.53014 0.95395 1.19903 0.94187 0.74321 0.99699 1.48522 1.34011 1.10122 1.19879 1.23256 0.94186 0.94746 0.96519 1.21764 1.11672 0.97280 1.01959 1.19394 0.97610 0.87195 0.94697 1.42268 1.47753 1.05972 1.30922 1.20699 0.78681 0.85092 0.84672 1.90689 1.39717 1.83710 1.26688 1.22668 0.98701 0.84202 0.97424 1.86144 1.64622 1.17813 1.52586 1.18186 0.93065 0.83935 0.90876 1.21467 1.07487 0.98398 0.99493 1.16926 0.91571 0.92925 0.83960 1.91561 1.75416 1.93936 1.49806 1.21094 1.02287 1.02582 0.98586 1.16783 0.91438 0.85170 0.92088 1.91554 1.73013 1.62539 1.83665 1.20437 1.05573 0.91065 1.05130 1.77311 1.25724 0.96722 1.17569 0.91897 0.93527 0.90107 0.77341 0.81536 0.73154 0.84375 0.84000 0.80617 0.81766 0.82858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.01 0.79 5.47 84.65 0.46 1.25 16 3 Si 0.95 39.86 27.47 68.60 1.88 41.75 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.24 -8.93 6.54 99.48 0.65 -8.28 16 7 C -0.55 -30.82 9.79 25.60 0.25 -30.57 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.24 10.72 5.33 85.63 0.46 11.17 16 10 N -0.34 -14.82 3.67 -351.84 -1.29 -16.11 16 11 C 0.06 2.16 11.44 83.52 0.96 3.11 16 12 C -0.30 -10.70 9.61 22.11 0.21 -10.48 16 13 C 0.27 9.78 8.11 133.33 1.08 10.86 16 14 N -0.62 -15.76 5.45 -307.52 -1.68 -17.43 16 15 C 0.52 12.10 7.87 87.65 0.69 12.79 16 16 O -0.53 -17.10 13.63 15.98 0.22 -16.89 16 17 C 0.05 0.57 5.22 71.23 0.37 0.94 16 18 O -0.30 -5.25 9.67 -73.33 -0.71 -5.96 16 19 C 0.19 2.66 6.68 22.49 0.15 2.81 16 20 C -0.25 -2.65 9.01 22.41 0.20 -2.45 16 21 C 0.17 2.02 7.30 22.36 0.16 2.18 16 22 F -0.13 -1.72 17.27 44.97 0.78 -0.94 16 23 C -0.23 -2.71 10.00 22.37 0.22 -2.48 16 24 C 0.16 2.32 7.30 22.35 0.16 2.48 16 25 F -0.13 -2.01 17.27 44.97 0.78 -1.23 16 26 C -0.20 -3.02 9.96 22.41 0.22 -2.79 16 27 N -0.34 -15.06 12.42 -54.45 -0.68 -15.74 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.05 2.05 7.20 -2.39 -0.02 2.03 16 30 H 0.08 3.11 7.50 -2.39 -0.02 3.10 16 31 H 0.21 5.40 8.06 -2.91 -0.02 5.38 16 32 H 0.17 5.87 5.92 -2.91 -0.02 5.85 16 33 H 0.43 7.87 8.82 -92.71 -0.82 7.05 16 34 H 0.14 0.78 7.67 -2.39 -0.02 0.76 16 35 H 0.14 0.66 7.65 -2.39 -0.02 0.65 16 36 H 0.18 0.85 6.30 -2.91 -0.02 0.83 16 37 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -79.10 346.23 5.48 -73.61 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.28 Total: 16.93 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.61 Total: -1.19 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.34 Total: -106.08 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.49 Total: -22.84 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 1.55 Total: -2.17 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.88 Total: 41.75 kcal Total: -79.10 5.48 -73.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354440299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.215 kcal (2) G-P(sol) polarization free energy of solvation -79.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds