Wall clock time and date at job start Tue Mar 31 2020 19:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40961 * 126.72951 * 2 1 4 4 C 1.36525 * 103.91785 * 180.02562 * 3 2 1 5 5 N 1.38730 * 126.87843 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99978 * 180.02562 * 5 4 3 7 7 O 1.21273 * 119.99991 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99776 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47248 * 40.00155 * 8 6 5 10 10 C 1.52995 * 109.47288 * 279.99839 * 8 6 5 11 11 S 1.81003 * 109.46981 * 159.99672 * 8 6 5 12 12 C 1.76201 * 99.99915 * 184.99930 * 11 8 6 13 13 N 1.32387 * 126.26139 * 359.95936 * 12 11 8 14 14 N 1.28517 * 110.20415 * 179.75754 * 13 12 11 15 15 C 1.33099 * 109.74368 * 0.45437 * 14 13 12 16 16 C 1.39776 * 126.56208 * 179.82090 * 15 14 13 17 17 H 1.07999 * 120.00260 * 185.76666 * 16 15 14 18 18 C 1.40086 * 120.00082 * 5.75723 * 16 15 14 19 19 N 1.30815 * 120.00054 * 184.06159 * 18 16 15 20 20 Si 1.86797 * 119.99719 * 4.07032 * 18 16 15 21 21 H 1.48502 * 109.47167 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47008 * 299.99380 * 20 18 16 23 23 H 1.48500 * 109.47687 * 59.99673 * 20 18 16 24 24 N 1.36675 * 126.25568 * 179.97438 * 12 11 8 25 25 C 1.46495 * 127.15324 * 0.02562 * 24 12 11 26 26 O 1.34248 * 106.24320 * 0.23815 * 4 3 2 27 27 N 1.20907 * 111.48024 * 359.56626 * 26 4 3 28 28 H 1.08998 * 109.47023 * 90.00346 * 1 2 3 29 29 H 1.09004 * 109.47145 * 210.00249 * 1 2 3 30 30 H 1.08999 * 109.47603 * 330.00181 * 1 2 3 31 31 H 1.08005 * 128.04043 * 0.02562 * 3 2 1 32 32 H 0.97007 * 119.99653 * 359.97438 * 5 4 3 33 33 H 1.09007 * 109.46954 * 299.99944 * 10 8 6 34 34 H 1.08993 * 109.47239 * 60.00191 * 10 8 6 35 35 H 1.09006 * 109.47431 * 180.02562 * 10 8 6 36 36 H 0.97001 * 119.99638 * 354.83567 * 19 18 16 37 37 H 1.08996 * 109.47382 * 269.95667 * 25 24 12 38 38 H 1.09002 * 109.47122 * 29.96214 * 25 24 12 39 39 H 1.09001 * 109.47179 * 149.95405 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3500 1.1298 0.0000 4 6 3.6084 0.6004 -0.0006 5 7 4.8061 1.3006 -0.0013 6 6 5.9769 0.6330 -0.0024 7 8 5.9835 -0.5797 -0.0022 8 6 7.2779 1.3936 -0.0038 9 1 7.1949 2.2567 0.6568 10 6 7.5904 1.8670 -1.4247 11 16 8.6086 0.3138 0.5789 12 6 9.9411 1.4659 0.6210 13 7 9.8788 2.7474 0.2947 14 7 11.0296 3.2999 0.4440 15 6 11.9100 2.3969 0.8695 16 6 13.2631 2.6174 1.1421 17 1 13.9055 1.7867 1.3942 18 6 13.7859 3.9159 1.0883 19 7 15.0670 4.1131 1.2650 20 14 12.6537 5.3659 0.7643 21 1 13.4469 6.6213 0.7571 22 1 11.9905 5.1913 -0.5529 23 1 11.6236 5.4379 1.8315 24 7 11.2281 1.1999 0.9964 25 6 11.7726 -0.0859 1.4395 26 8 3.4549 -0.7332 -0.0063 27 7 2.2866 -1.0444 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0663 2.1719 0.0004 32 1 4.8008 2.2706 -0.0018 33 1 7.6734 1.0038 -2.0852 34 1 6.7891 2.5172 -1.7755 35 1 8.5316 2.4168 -1.4258 36 1 15.6430 3.3711 1.5073 37 1 11.6735 -0.1690 2.5217 38 1 11.2239 -0.8972 0.9610 39 1 12.8257 -0.1484 1.1652 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357094605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:02 Heat of formation + Delta-G solvation = 91.372179 kcal Electronic energy + Delta-G solvation = -25735.738187 eV Core-core repulsion = 21809.314602 eV Total energy + Delta-G solvation = -3926.423585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.13369 -41.03441 -40.39414 -35.88307 -34.98083 -34.10644 -33.72903 -33.32731 -30.52717 -30.00814 -28.99015 -26.81564 -25.47817 -25.15783 -23.57686 -22.38275 -21.54000 -20.43762 -20.06703 -18.68149 -18.28131 -17.96633 -17.67559 -16.73044 -16.27339 -15.56967 -15.41960 -15.11104 -14.59603 -14.49154 -13.96303 -13.76693 -13.71189 -13.39313 -13.35863 -13.06387 -13.03440 -12.76143 -12.68979 -12.27427 -12.06695 -11.86990 -11.75877 -11.45140 -11.18065 -10.90646 -10.44957 -10.30364 -10.29545 -9.94904 -9.63349 -9.47694 -9.20294 -8.85795 -8.75929 -8.48591 -7.49695 -7.20537 -4.91977 1.02358 1.32950 1.85579 1.99684 2.30561 2.42634 2.81014 3.15140 3.50140 3.51839 3.79031 3.86182 3.97782 4.05394 4.22259 4.33393 4.47531 4.68326 4.74352 4.99679 5.01570 5.03300 5.12907 5.20602 5.33513 5.40310 5.53293 5.68394 5.70150 5.78388 5.86593 5.87456 6.21931 6.31652 6.52299 6.59791 7.03679 7.32831 7.43215 7.45437 7.97484 8.06666 8.26603 8.47876 9.88368 10.00561 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.002428 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.416282 B =11530.719704 C =12265.786816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.037 3.963 3 C -0.276 4.276 4 C 0.220 3.780 5 N -0.624 5.624 6 C 0.533 3.467 7 O -0.476 6.476 8 C -0.097 4.097 9 H 0.127 0.873 10 C -0.145 4.145 11 S 0.033 5.967 12 C 0.053 3.947 13 N -0.270 5.270 14 N -0.415 5.415 15 C 0.347 3.653 16 C -0.490 4.490 17 H 0.083 0.917 18 C 0.063 3.937 19 N -0.805 5.805 20 Si 1.114 2.886 21 H -0.311 1.311 22 H -0.260 1.260 23 H -0.280 1.280 24 N -0.510 5.510 25 C 0.100 3.900 26 O 0.112 5.888 27 N -0.369 5.369 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.436 0.564 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.284 0.716 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 -4.209 -1.935 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C -0.302 4.302 4 C 0.060 3.940 5 N -0.279 5.279 6 C 0.318 3.682 7 O -0.346 6.346 8 C -0.230 4.230 9 H 0.145 0.855 10 C -0.204 4.204 11 S 0.260 5.740 12 C -0.321 4.321 13 N -0.114 5.114 14 N -0.265 5.265 15 C 0.104 3.896 16 C -0.531 4.531 17 H 0.102 0.898 18 C -0.160 4.160 19 N -0.429 5.429 20 Si 0.943 3.057 21 H -0.241 1.241 22 H -0.186 1.186 23 H -0.207 1.207 24 N -0.211 5.211 25 C -0.045 4.045 26 O 0.052 5.948 27 N -0.079 5.079 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.194 0.806 32 H 0.277 0.723 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.859 -4.723 -2.333 22.485 hybrid contribution 0.943 -0.448 0.557 1.183 sum -20.916 -5.171 -1.776 21.619 Atomic orbital electron populations 1.20174 0.85698 1.03883 1.03479 1.23215 0.98899 0.88375 1.01611 1.21829 0.88850 1.01451 1.18096 1.20816 0.88000 0.84822 1.00398 1.42774 1.01291 1.10723 1.73111 1.20410 0.84348 0.88218 0.75186 1.90852 1.86392 1.13097 1.44264 1.23190 0.92614 1.02437 1.04767 0.85537 1.22096 1.05092 1.02363 0.90828 1.85247 0.95992 1.07953 1.84830 1.25603 0.90049 0.98467 1.17992 1.74144 1.18277 1.01837 1.17108 1.73968 0.96445 1.23667 1.32466 1.21702 0.94753 0.79610 0.93545 1.19416 0.90149 0.97381 1.46143 0.89848 1.27385 0.97347 1.01753 0.89500 1.70674 1.04342 1.37378 1.30471 0.82679 0.71679 0.70602 0.80787 1.24146 1.18600 1.20701 1.45796 1.06890 1.10491 1.57922 1.21574 1.00138 0.82935 0.99811 1.85146 1.21646 1.19546 1.68486 1.73950 0.88486 1.23067 1.22412 0.90032 0.90456 0.89884 0.80649 0.72303 0.91338 0.91707 0.87817 0.90478 0.92011 0.91050 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.47 36.00 0.38 -0.06 16 2 C 0.04 0.37 7.31 -82.20 -0.60 -0.23 16 3 C -0.28 -2.33 11.15 -39.17 -0.44 -2.77 16 4 C 0.22 2.40 7.92 -15.05 -0.12 2.28 16 5 N -0.62 -5.82 5.39 -11.79 -0.06 -5.88 16 6 C 0.53 6.76 6.96 -10.99 -0.08 6.68 16 7 O -0.48 -7.76 14.88 -15.84 -0.24 -7.99 16 8 C -0.10 -1.30 2.69 -27.89 -0.07 -1.37 16 9 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 10 C -0.14 -1.85 8.99 37.16 0.33 -1.52 16 11 S 0.03 0.56 20.48 -107.50 -2.20 -1.64 16 12 C 0.05 1.11 7.77 -87.27 -0.68 0.43 16 13 N -0.27 -6.27 9.74 30.89 0.30 -5.97 16 14 N -0.42 -10.84 7.51 31.26 0.23 -10.60 16 15 C 0.35 8.85 7.27 -154.81 -1.13 7.73 16 16 C -0.49 -12.73 9.50 -38.31 -0.36 -13.09 16 17 H 0.08 2.11 7.46 -52.49 -0.39 1.72 16 18 C 0.06 1.65 5.52 -17.29 -0.10 1.56 16 19 N -0.80 -21.07 13.65 55.56 0.76 -20.32 16 20 Si 1.11 26.95 25.89 -169.99 -4.40 22.55 16 21 H -0.31 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.43 6.77 56.52 0.38 -6.05 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 N -0.51 -11.32 3.26 -123.18 -0.40 -11.72 16 25 C 0.10 1.72 10.89 59.84 0.65 2.37 16 26 O 0.11 1.58 9.63 -4.77 -0.05 1.54 16 27 N -0.37 -4.87 12.06 33.48 0.40 -4.47 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.44 2.35 8.82 -40.82 -0.36 1.99 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.68 5.89 -51.93 -0.31 1.37 16 36 H 0.28 7.07 8.72 -40.82 -0.36 6.71 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 39 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -33.61 351.19 -6.97 -40.58 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.41 Total: -3.37 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.21 Total: 2.00 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 1.23 Total: -58.96 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.28 Total: -6.46 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.40 Total: 22.55 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -2.20 Total: -1.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.61 -6.97 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357094605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.952 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds