Wall clock time and date at job start Tue Mar 31 2020 19:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40961 * 126.72951 * 2 1 4 4 C 1.36525 * 103.91785 * 180.02562 * 3 2 1 5 5 N 1.38730 * 126.87843 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99978 * 180.02562 * 5 4 3 7 7 O 1.21273 * 119.99991 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99776 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47248 * 40.00155 * 8 6 5 10 10 C 1.52995 * 109.47288 * 279.99839 * 8 6 5 11 11 S 1.81003 * 109.46981 * 159.99672 * 8 6 5 12 12 C 1.76201 * 99.99915 * 184.99930 * 11 8 6 13 13 N 1.32387 * 126.26139 * 359.95936 * 12 11 8 14 14 N 1.28517 * 110.20415 * 179.75754 * 13 12 11 15 15 C 1.33099 * 109.74368 * 0.45437 * 14 13 12 16 16 C 1.39776 * 126.56208 * 179.82090 * 15 14 13 17 17 H 1.07999 * 120.00260 * 185.76666 * 16 15 14 18 18 C 1.40086 * 120.00082 * 5.75723 * 16 15 14 19 19 N 1.30815 * 120.00054 * 184.06159 * 18 16 15 20 20 Si 1.86797 * 119.99719 * 4.07032 * 18 16 15 21 21 H 1.48502 * 109.47167 * 179.97438 * 20 18 16 22 22 H 1.48503 * 109.47008 * 299.99380 * 20 18 16 23 23 H 1.48500 * 109.47687 * 59.99673 * 20 18 16 24 24 N 1.36675 * 126.25568 * 179.97438 * 12 11 8 25 25 C 1.46495 * 127.15324 * 0.02562 * 24 12 11 26 26 O 1.34248 * 106.24320 * 0.23815 * 4 3 2 27 27 N 1.20907 * 111.48024 * 359.56626 * 26 4 3 28 28 H 1.08998 * 109.47023 * 90.00346 * 1 2 3 29 29 H 1.09004 * 109.47145 * 210.00249 * 1 2 3 30 30 H 1.08999 * 109.47603 * 330.00181 * 1 2 3 31 31 H 1.08005 * 128.04043 * 0.02562 * 3 2 1 32 32 H 0.97007 * 119.99653 * 359.97438 * 5 4 3 33 33 H 1.09007 * 109.46954 * 299.99944 * 10 8 6 34 34 H 1.08993 * 109.47239 * 60.00191 * 10 8 6 35 35 H 1.09006 * 109.47431 * 180.02562 * 10 8 6 36 36 H 0.97001 * 119.99638 * 354.83567 * 19 18 16 37 37 H 1.08996 * 109.47382 * 269.95667 * 25 24 12 38 38 H 1.09002 * 109.47122 * 29.96214 * 25 24 12 39 39 H 1.09001 * 109.47179 * 149.95405 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3500 1.1298 0.0000 4 6 3.6084 0.6004 -0.0006 5 7 4.8061 1.3006 -0.0013 6 6 5.9769 0.6330 -0.0024 7 8 5.9835 -0.5797 -0.0022 8 6 7.2779 1.3936 -0.0038 9 1 7.1949 2.2567 0.6568 10 6 7.5904 1.8670 -1.4247 11 16 8.6086 0.3138 0.5789 12 6 9.9411 1.4659 0.6210 13 7 9.8788 2.7474 0.2947 14 7 11.0296 3.2999 0.4440 15 6 11.9100 2.3969 0.8695 16 6 13.2631 2.6174 1.1421 17 1 13.9055 1.7867 1.3942 18 6 13.7859 3.9159 1.0883 19 7 15.0670 4.1131 1.2650 20 14 12.6537 5.3659 0.7643 21 1 13.4469 6.6213 0.7571 22 1 11.9905 5.1913 -0.5529 23 1 11.6236 5.4379 1.8315 24 7 11.2281 1.1999 0.9964 25 6 11.7726 -0.0859 1.4395 26 8 3.4549 -0.7332 -0.0063 27 7 2.2866 -1.0444 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0663 2.1719 0.0004 32 1 4.8008 2.2706 -0.0018 33 1 7.6734 1.0038 -2.0852 34 1 6.7891 2.5172 -1.7755 35 1 8.5316 2.4168 -1.4258 36 1 15.6430 3.3711 1.5073 37 1 11.6735 -0.1690 2.5217 38 1 11.2239 -0.8972 0.9610 39 1 12.8257 -0.1484 1.1652 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357094605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:01 Heat of formation + Delta-G solvation = 69.554573 kcal Electronic energy + Delta-G solvation = -25736.684269 eV Core-core repulsion = 21809.314602 eV Total energy + Delta-G solvation = -3927.369667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.93956 -42.84353 -41.40197 -36.80190 -35.94438 -35.71379 -35.43697 -34.50485 -31.95385 -31.25919 -29.57203 -28.42329 -27.24572 -26.21855 -24.34548 -23.40598 -23.25259 -22.15154 -21.00270 -20.17623 -19.55718 -18.86454 -18.77414 -18.00195 -17.26541 -16.93535 -16.80961 -16.59078 -16.00377 -15.71964 -15.56332 -15.03099 -14.71312 -14.58032 -14.22716 -14.19716 -14.01633 -14.00738 -13.61399 -13.53633 -13.49428 -13.09637 -12.99712 -12.74198 -12.69400 -12.16211 -11.93348 -11.65244 -11.48072 -11.40696 -11.36790 -11.01357 -10.92692 -10.54128 -10.35210 -9.67398 -9.47507 -8.76153 -6.84594 -0.00344 0.19963 0.89646 0.99209 1.07930 1.18157 1.49162 1.57505 1.62440 1.97045 2.14075 2.20803 2.25432 2.43304 3.06027 3.22056 3.31845 3.67489 3.82881 3.92465 3.94852 3.96933 4.32691 4.44095 4.46534 4.55100 4.60982 4.66596 4.69226 4.74352 4.75699 4.89526 5.03730 5.20725 5.26141 5.29666 5.38265 5.69926 5.78429 6.01668 6.40312 6.53694 6.57468 7.27432 7.93664 8.15162 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.002428 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.416282 B =11530.719704 C =12265.786816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 C -0.249 4.249 4 C 0.197 3.803 5 N -0.602 5.602 6 C 0.542 3.458 7 O -0.517 6.517 8 C -0.092 4.092 9 H 0.142 0.858 10 C -0.141 4.141 11 S 0.046 5.954 12 C 0.072 3.928 13 N -0.291 5.291 14 N -0.442 5.442 15 C 0.327 3.673 16 C -0.508 4.508 17 H 0.080 0.920 18 C 0.039 3.961 19 N -0.824 5.824 20 Si 1.148 2.852 21 H -0.301 1.301 22 H -0.272 1.272 23 H -0.290 1.290 24 N -0.514 5.514 25 C 0.092 3.908 26 O 0.072 5.928 27 N -0.407 5.407 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.217 0.783 32 H 0.455 0.545 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.285 0.715 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 -3.743 -2.081 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C -0.275 4.275 4 C 0.037 3.963 5 N -0.258 5.258 6 C 0.328 3.672 7 O -0.390 6.390 8 C -0.225 4.225 9 H 0.160 0.840 10 C -0.199 4.199 11 S 0.272 5.728 12 C -0.303 4.303 13 N -0.134 5.134 14 N -0.291 5.291 15 C 0.081 3.919 16 C -0.550 4.550 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.449 5.449 20 Si 0.976 3.024 21 H -0.231 1.231 22 H -0.198 1.198 23 H -0.218 1.218 24 N -0.214 5.214 25 C -0.051 4.051 26 O 0.016 5.984 27 N -0.122 5.122 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.234 0.766 32 H 0.301 0.699 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.922 -4.213 -2.476 25.397 hybrid contribution 1.560 -0.745 0.577 1.822 sum -23.363 -4.959 -1.899 23.959 Atomic orbital electron populations 1.20379 0.83037 1.05119 1.04735 1.24009 1.00628 0.88071 0.99475 1.22370 0.87170 1.02887 1.15057 1.21175 0.88980 0.84304 1.01852 1.42463 1.00024 1.11477 1.71875 1.20144 0.84816 0.87496 0.74731 1.90853 1.86943 1.14737 1.46473 1.23284 0.91642 1.02122 1.05436 0.84003 1.22020 1.04925 1.02584 0.90403 1.85351 0.95459 1.07379 1.84645 1.26450 0.90875 0.98732 1.14212 1.74110 1.17417 1.02865 1.18978 1.73865 0.97452 1.24911 1.32877 1.21747 0.94858 0.80982 0.94337 1.19397 0.90651 0.97334 1.47570 0.90164 1.27885 0.97766 1.02920 0.89494 1.70676 1.04521 1.37552 1.32146 0.82191 0.70607 0.70042 0.79569 1.23075 1.19849 1.21767 1.46148 1.07145 1.11196 1.56865 1.21896 1.00619 0.81447 1.01118 1.85084 1.22277 1.21291 1.69783 1.73984 0.88712 1.24920 1.24629 0.88630 0.90736 0.87155 0.76589 0.69932 0.91578 0.87820 0.90914 0.90392 0.90304 0.88638 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.47 71.24 0.75 0.10 16 2 C 0.04 0.63 7.31 43.45 0.32 0.94 16 3 C -0.25 -3.32 11.15 22.54 0.25 -3.07 16 4 C 0.20 3.86 7.92 83.20 0.66 4.51 16 5 N -0.60 -9.56 5.39 -419.71 -2.26 -11.83 16 6 C 0.54 12.71 6.96 87.66 0.61 13.32 16 7 O -0.52 -16.42 14.88 17.46 0.26 -16.16 16 8 C -0.09 -2.26 2.69 29.85 0.08 -2.18 16 9 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 10 C -0.14 -3.30 8.99 71.98 0.65 -2.65 16 11 S 0.05 1.45 20.48 -56.49 -1.16 0.30 16 12 C 0.07 2.97 7.77 179.18 1.39 4.37 16 13 N -0.29 -13.37 9.74 -56.17 -0.55 -13.92 16 14 N -0.44 -23.13 7.51 -55.02 -0.41 -23.55 16 15 C 0.33 16.80 7.27 133.23 0.97 17.77 16 16 C -0.51 -26.81 9.50 23.09 0.22 -26.59 16 17 H 0.08 4.14 7.46 -2.91 -0.02 4.12 16 18 C 0.04 2.07 5.52 85.29 0.47 2.54 16 19 N -0.82 -43.67 13.65 21.86 0.30 -43.37 16 20 Si 1.15 55.63 25.89 68.60 1.78 57.41 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -13.56 6.77 99.48 0.67 -12.89 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 N -0.51 -22.43 3.26 -543.63 -1.77 -24.20 16 25 C 0.09 3.04 10.89 127.77 1.39 4.43 16 26 O 0.07 1.99 9.63 90.13 0.87 2.85 16 27 N -0.41 -10.47 12.06 -49.00 -0.59 -11.06 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.22 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.46 3.17 8.82 -92.70 -0.82 2.35 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.26 5.89 -2.38 -0.01 2.24 16 36 H 0.28 14.45 8.72 -92.71 -0.81 13.64 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.69 7.85 -2.39 -0.02 2.67 16 39 H 0.08 2.72 7.48 -2.39 -0.02 2.70 16 Total: -1.00 -75.38 351.19 4.44 -70.93 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 0.23 Total: -0.90 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 7.75 Total: 13.49 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -5.29 Total: -127.93 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 1.13 Total: -13.31 kcal Atomic # 14 Polarization: 55.63 SS G_CDS: 1.78 Total: 57.41 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.16 Total: 0.30 kcal Total: -75.38 4.44 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357094605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.489 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds