Wall clock time and date at job start Tue Mar 31 2020 19:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35246 * 126.69687 * 2 1 4 4 C 1.42020 * 103.95796 * 179.97438 * 3 2 1 5 5 N 1.39495 * 126.89552 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00193 * 0.02562 * 5 4 3 7 7 O 1.21274 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00491 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47333 * 179.97438 * 8 6 5 10 10 S 1.81001 * 109.47038 * 180.02562 * 9 8 6 11 11 C 1.76200 * 99.99813 * 180.02562 * 10 9 8 12 12 N 1.32394 * 126.25874 * 359.97384 * 11 10 9 13 13 N 1.28516 * 110.20034 * 180.02562 * 12 11 10 14 14 C 1.33095 * 109.75073 * 0.02562 * 13 12 11 15 15 C 1.39771 * 126.56547 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00111 * 188.22178 * 15 14 13 17 17 C 1.40084 * 120.00218 * 8.21795 * 15 14 13 18 18 N 1.30817 * 119.99946 * 191.23483 * 17 15 14 19 19 Si 1.86798 * 119.99751 * 11.23165 * 17 15 14 20 20 H 1.48506 * 109.46877 * 270.00124 * 19 17 15 21 21 H 1.48499 * 109.47207 * 29.99996 * 19 17 15 22 22 H 1.48496 * 109.47289 * 150.00071 * 19 17 15 23 23 N 1.36672 * 126.26147 * 180.30773 * 11 10 9 24 24 C 1.46501 * 127.14877 * 359.97438 * 23 11 10 25 25 N 1.30720 * 106.20984 * 0.24515 * 4 3 2 26 26 O 1.20911 * 111.47690 * 359.56865 * 25 4 3 27 27 H 1.09007 * 109.46890 * 90.00176 * 1 2 3 28 28 H 1.09003 * 109.47218 * 209.99584 * 1 2 3 29 29 H 1.08999 * 109.47344 * 330.00042 * 1 2 3 30 30 H 1.08000 * 128.01730 * 359.94618 * 3 2 1 31 31 H 0.96997 * 120.00335 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46586 * 59.99838 * 8 6 5 33 33 H 1.08994 * 109.47254 * 300.00373 * 8 6 5 34 34 H 1.09004 * 109.46463 * 60.00166 * 9 8 6 35 35 H 1.08994 * 109.47549 * 300.00552 * 9 8 6 36 36 H 0.96998 * 119.99838 * 354.77302 * 18 17 15 37 37 H 1.09004 * 109.46941 * 270.14226 * 24 23 11 38 38 H 1.09008 * 109.47284 * 30.13706 * 24 23 11 39 39 H 1.08993 * 109.47266 * 150.14108 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6251 0.5355 0.0006 5 7 4.8286 1.2406 0.0004 6 6 4.8201 2.5884 0.0000 7 8 3.7660 3.1881 -0.0006 8 6 6.1203 3.3503 0.0003 9 6 5.8311 4.8527 -0.0009 10 16 7.3928 5.7677 -0.0013 11 6 6.7796 7.4195 -0.0019 12 7 5.5062 7.7821 -0.0025 13 7 5.4097 9.0636 -0.0034 14 6 6.6250 9.6062 -0.0039 15 6 6.9276 10.9707 -0.0054 16 1 7.9483 11.2974 -0.1395 17 6 5.9071 11.9148 0.1669 18 7 6.1451 13.1824 -0.0513 19 14 4.2065 11.3633 0.7084 20 1 3.3814 11.0569 -0.4877 21 1 4.3258 10.1472 1.5523 22 1 3.5604 12.4474 1.4910 23 7 7.5313 8.5609 -0.0083 24 6 8.9931 8.6574 -0.0154 25 7 3.4764 -0.7633 -0.0045 26 8 2.3082 -1.0752 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 2.0305 2.1262 -0.0008 31 1 5.6718 0.7611 0.0012 32 1 6.6939 3.0903 -0.8894 33 1 6.6932 3.0909 0.8905 34 1 5.2573 5.1129 0.8886 35 1 5.2584 5.1118 -0.8913 36 1 7.0454 13.4782 -0.2585 37 1 9.3607 8.6814 1.0105 38 1 9.4119 7.7932 -0.5312 39 1 9.2946 9.5693 -0.5307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357100459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:42 Heat of formation + Delta-G solvation = 85.935256 kcal Electronic energy + Delta-G solvation = -25074.685131 eV Core-core repulsion = 21148.025783 eV Total energy + Delta-G solvation = -3926.659347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.12752 -40.94272 -40.41297 -35.97859 -34.00317 -33.93829 -33.64914 -33.27582 -32.00448 -30.02909 -28.11457 -26.81639 -25.90857 -25.07219 -23.55165 -21.64210 -21.36838 -20.87342 -20.11484 -18.21779 -17.95692 -17.79611 -17.43302 -16.88120 -16.51332 -16.19929 -15.33498 -15.09506 -14.80734 -14.14590 -14.04262 -13.83933 -13.83098 -13.59891 -13.51730 -13.12519 -12.76662 -12.66064 -12.62965 -12.41802 -12.06534 -11.94468 -11.67328 -11.52367 -11.11837 -10.88849 -10.45664 -10.33991 -9.94709 -9.67955 -9.62371 -9.40108 -9.15714 -9.05966 -8.68801 -8.41441 -7.45828 -7.14454 -4.85137 1.11135 1.60226 1.69668 2.31189 2.51928 2.52739 2.86947 2.88259 3.52479 3.59412 3.87441 3.95865 4.01251 4.09499 4.28675 4.37221 4.48174 4.65177 4.73828 4.80399 4.94903 5.04301 5.08275 5.14158 5.25538 5.34521 5.49168 5.59869 5.67697 5.69703 5.87449 6.03388 6.10375 6.36670 6.63295 6.72032 7.10284 7.38111 7.51635 7.59990 8.01601 8.02727 8.33604 8.53871 9.94021 10.10296 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.002265 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.623021 B =12361.581078 C =13804.285960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 C -0.227 4.227 4 C 0.249 3.751 5 N -0.635 5.635 6 C 0.528 3.472 7 O -0.498 6.498 8 C -0.119 4.119 9 C -0.083 4.083 10 S -0.044 6.044 11 C 0.063 3.937 12 N -0.265 5.265 13 N -0.409 5.409 14 C 0.344 3.656 15 C -0.493 4.493 16 H 0.083 0.917 17 C 0.066 3.934 18 N -0.806 5.806 19 Si 1.104 2.896 20 H -0.276 1.276 21 H -0.255 1.255 22 H -0.310 1.310 23 N -0.513 5.513 24 C 0.102 3.898 25 N -0.394 5.394 26 O 0.094 5.906 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.420 0.580 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.284 0.716 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -23.891 0.404 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.249 4.249 4 C 0.000 4.000 5 N -0.287 5.287 6 C 0.314 3.686 7 O -0.369 6.369 8 C -0.161 4.161 9 C -0.232 4.232 10 S 0.183 5.817 11 C -0.311 4.311 12 N -0.109 5.109 13 N -0.259 5.259 14 C 0.101 3.899 15 C -0.534 4.534 16 H 0.101 0.899 17 C -0.157 4.157 18 N -0.430 5.430 19 Si 0.932 3.068 20 H -0.202 1.202 21 H -0.180 1.180 22 H -0.240 1.240 23 N -0.214 5.214 24 C -0.042 4.042 25 N -0.110 5.110 26 O 0.034 5.966 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.209 0.791 31 H 0.256 0.744 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.952 -24.349 0.646 24.536 hybrid contribution 2.393 0.779 -0.473 2.561 sum -0.559 -23.570 0.172 23.577 Atomic orbital electron populations 1.20364 0.83658 1.04810 1.04293 1.24465 0.96534 0.85760 1.02002 1.22782 0.89273 1.02306 1.10580 1.20555 0.88634 0.88851 1.01956 1.42622 1.06097 1.06557 1.73469 1.20827 0.92377 0.80371 0.75062 1.90727 1.32784 1.67651 1.45769 1.21361 0.94453 0.94045 1.06225 1.23039 0.98235 0.93105 1.08833 1.84281 1.10179 0.91589 1.95650 1.25256 0.91859 0.91917 1.22053 1.74314 1.13193 1.07782 1.15616 1.74241 1.17582 0.99231 1.34859 1.21679 0.83935 0.90170 0.94131 1.19362 0.98200 0.86998 1.48813 0.89912 1.27314 1.06631 0.92075 0.89681 1.70659 1.24962 1.16538 1.30838 0.82913 0.71287 0.73699 0.78939 1.20241 1.18020 1.24006 1.45852 1.06563 1.04711 1.64253 1.21533 0.77858 1.02852 1.02003 1.74025 0.97712 1.13137 1.26175 1.84782 1.10416 1.32402 1.69030 0.89235 0.89758 0.88736 0.79129 0.74359 0.87174 0.87144 0.87960 0.88002 0.90498 0.92136 0.91227 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.01 0.38 0.02 16 2 C -0.02 -0.22 7.48 -35.37 -0.26 -0.48 16 3 C -0.23 -2.54 9.79 -39.20 -0.38 -2.93 16 4 C 0.25 2.87 8.18 -154.83 -1.27 1.60 16 5 N -0.63 -5.87 5.42 -11.44 -0.06 -5.93 16 6 C 0.53 5.69 7.79 -10.98 -0.09 5.60 16 7 O -0.50 -7.24 13.26 5.56 0.07 -7.17 16 8 C -0.12 -1.06 5.70 -27.88 -0.16 -1.21 16 9 C -0.08 -1.15 4.51 37.16 0.17 -0.98 16 10 S -0.04 -0.69 21.79 -107.50 -2.34 -3.03 16 11 C 0.06 1.40 8.09 -87.27 -0.71 0.69 16 12 N -0.27 -6.83 11.62 30.89 0.36 -6.47 16 13 N -0.41 -11.41 7.50 31.26 0.23 -11.17 16 14 C 0.34 9.15 7.21 -154.82 -1.12 8.04 16 15 C -0.49 -13.17 9.47 -38.32 -0.36 -13.53 16 16 H 0.08 2.14 7.46 -52.48 -0.39 1.75 16 17 C 0.07 1.78 5.52 -17.29 -0.10 1.68 16 18 N -0.81 -21.61 13.65 55.56 0.76 -20.85 16 19 Si 1.10 27.76 26.40 -169.99 -4.49 23.27 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.69 6.25 56.52 0.35 -6.34 16 22 H -0.31 -7.46 7.11 56.52 0.40 -7.05 16 23 N -0.51 -11.75 3.26 -123.18 -0.40 -12.15 16 24 C 0.10 1.77 10.89 59.85 0.65 2.42 16 25 N -0.39 -4.62 12.10 31.19 0.38 -4.24 16 26 O 0.09 0.99 11.19 17.06 0.19 1.18 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.19 2.31 6.22 -52.49 -0.33 1.98 16 31 H 0.42 2.52 8.82 -40.82 -0.36 2.16 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.62 8.10 -51.91 -0.42 1.20 16 35 H 0.10 1.62 8.10 -51.92 -0.42 1.19 16 36 H 0.28 7.22 8.73 -40.82 -0.36 6.86 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.02 7.85 -51.92 -0.41 0.61 16 39 H 0.08 1.33 7.47 -51.93 -0.39 0.94 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -35.13 353.33 -7.67 -42.80 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.45 Total: -2.48 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.24 Total: 0.91 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 1.27 Total: -60.81 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.26 Total: -5.98 kcal Atomic # 14 Polarization: 27.76 SS G_CDS: -4.49 Total: 23.27 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.34 Total: -3.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.13 -7.67 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357100459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.735 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds