Wall clock time and date at job start Tue Mar 31 2020 19:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35246 * 126.69687 * 2 1 4 4 C 1.42020 * 103.95796 * 179.97438 * 3 2 1 5 5 N 1.39495 * 126.89552 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00193 * 0.02562 * 5 4 3 7 7 O 1.21274 * 119.99571 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00491 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47333 * 179.97438 * 8 6 5 10 10 S 1.81001 * 109.47038 * 180.02562 * 9 8 6 11 11 C 1.76200 * 99.99813 * 180.02562 * 10 9 8 12 12 N 1.32394 * 126.25874 * 359.97384 * 11 10 9 13 13 N 1.28516 * 110.20034 * 180.02562 * 12 11 10 14 14 C 1.33095 * 109.75073 * 0.02562 * 13 12 11 15 15 C 1.39771 * 126.56547 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00111 * 188.22178 * 15 14 13 17 17 C 1.40084 * 120.00218 * 8.21795 * 15 14 13 18 18 N 1.30817 * 119.99946 * 191.23483 * 17 15 14 19 19 Si 1.86798 * 119.99751 * 11.23165 * 17 15 14 20 20 H 1.48506 * 109.46877 * 270.00124 * 19 17 15 21 21 H 1.48499 * 109.47207 * 29.99996 * 19 17 15 22 22 H 1.48496 * 109.47289 * 150.00071 * 19 17 15 23 23 N 1.36672 * 126.26147 * 180.30773 * 11 10 9 24 24 C 1.46501 * 127.14877 * 359.97438 * 23 11 10 25 25 N 1.30720 * 106.20984 * 0.24515 * 4 3 2 26 26 O 1.20911 * 111.47690 * 359.56865 * 25 4 3 27 27 H 1.09007 * 109.46890 * 90.00176 * 1 2 3 28 28 H 1.09003 * 109.47218 * 209.99584 * 1 2 3 29 29 H 1.08999 * 109.47344 * 330.00042 * 1 2 3 30 30 H 1.08000 * 128.01730 * 359.94618 * 3 2 1 31 31 H 0.96997 * 120.00335 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46586 * 59.99838 * 8 6 5 33 33 H 1.08994 * 109.47254 * 300.00373 * 8 6 5 34 34 H 1.09004 * 109.46463 * 60.00166 * 9 8 6 35 35 H 1.08994 * 109.47549 * 300.00552 * 9 8 6 36 36 H 0.96998 * 119.99838 * 354.77302 * 18 17 15 37 37 H 1.09004 * 109.46941 * 270.14226 * 24 23 11 38 38 H 1.09008 * 109.47284 * 30.13706 * 24 23 11 39 39 H 1.08993 * 109.47266 * 150.14108 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6251 0.5355 0.0006 5 7 4.8286 1.2406 0.0004 6 6 4.8201 2.5884 0.0000 7 8 3.7660 3.1881 -0.0006 8 6 6.1203 3.3503 0.0003 9 6 5.8311 4.8527 -0.0009 10 16 7.3928 5.7677 -0.0013 11 6 6.7796 7.4195 -0.0019 12 7 5.5062 7.7821 -0.0025 13 7 5.4097 9.0636 -0.0034 14 6 6.6250 9.6062 -0.0039 15 6 6.9276 10.9707 -0.0054 16 1 7.9483 11.2974 -0.1395 17 6 5.9071 11.9148 0.1669 18 7 6.1451 13.1824 -0.0513 19 14 4.2065 11.3633 0.7084 20 1 3.3814 11.0569 -0.4877 21 1 4.3258 10.1472 1.5523 22 1 3.5604 12.4474 1.4910 23 7 7.5313 8.5609 -0.0083 24 6 8.9931 8.6574 -0.0154 25 7 3.4764 -0.7633 -0.0045 26 8 2.3082 -1.0752 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 2.0305 2.1262 -0.0008 31 1 5.6718 0.7611 0.0012 32 1 6.6939 3.0903 -0.8894 33 1 6.6932 3.0909 0.8905 34 1 5.2573 5.1129 0.8886 35 1 5.2584 5.1118 -0.8913 36 1 7.0454 13.4782 -0.2585 37 1 9.3607 8.6814 1.0105 38 1 9.4119 7.7932 -0.5312 39 1 9.2946 9.5693 -0.5307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357100459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:41 Heat of formation + Delta-G solvation = 63.190944 kcal Electronic energy + Delta-G solvation = -25075.671398 eV Core-core repulsion = 21148.025783 eV Total energy + Delta-G solvation = -3927.645615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.93800 -42.82692 -41.28810 -36.83642 -35.93013 -35.41336 -34.69838 -34.18994 -32.86115 -31.96863 -28.69594 -28.45034 -27.40631 -26.40592 -24.43232 -23.32714 -22.45382 -22.01126 -21.58400 -20.18432 -18.77327 -18.65977 -18.22052 -18.19388 -17.60608 -17.14255 -16.97408 -16.76604 -15.99751 -15.76513 -15.38464 -15.13908 -14.86202 -14.69312 -14.39142 -14.18498 -14.11595 -13.99679 -13.57722 -13.42469 -13.32922 -13.08614 -12.97051 -12.85335 -12.52119 -12.26643 -11.98520 -11.76333 -11.53686 -11.39080 -11.26219 -10.86255 -10.54270 -10.42986 -10.34560 -9.97663 -9.49106 -8.67549 -6.84093 0.23222 0.32853 0.87753 0.99170 1.05592 1.49807 1.52486 1.61514 1.70226 1.94832 2.09519 2.16548 2.22700 2.39835 3.04495 3.22954 3.43194 3.61713 3.87845 3.95102 3.98755 4.05475 4.33558 4.35884 4.42955 4.50449 4.58421 4.61636 4.70740 4.71591 4.73626 4.85126 4.93933 5.14924 5.24398 5.28733 5.37929 5.71680 6.01289 6.02968 6.40484 6.58910 6.81880 7.21969 7.92554 8.17823 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.002265 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.623021 B =12361.581078 C =13804.285960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.259 4.259 4 C 0.237 3.763 5 N -0.620 5.620 6 C 0.531 3.469 7 O -0.542 6.542 8 C -0.106 4.106 9 C -0.087 4.087 10 S 0.032 5.968 11 C 0.074 3.926 12 N -0.314 5.314 13 N -0.444 5.444 14 C 0.323 3.677 15 C -0.509 4.509 16 H 0.084 0.916 17 C 0.044 3.956 18 N -0.823 5.823 19 Si 1.136 2.864 20 H -0.289 1.289 21 H -0.276 1.276 22 H -0.295 1.295 23 N -0.515 5.515 24 C 0.092 3.908 25 N -0.408 5.408 26 O 0.088 5.912 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.178 0.822 31 H 0.436 0.564 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.287 0.713 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -26.675 0.472 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.282 4.282 4 C -0.013 4.013 5 N -0.274 5.274 6 C 0.317 3.683 7 O -0.417 6.417 8 C -0.147 4.147 9 C -0.236 4.236 10 S 0.259 5.741 11 C -0.301 4.301 12 N -0.157 5.157 13 N -0.292 5.292 14 C 0.076 3.924 15 C -0.550 4.550 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.448 5.448 19 Si 0.964 3.036 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.223 1.223 23 N -0.215 5.215 24 C -0.050 4.050 25 N -0.126 5.126 26 O 0.030 5.970 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.195 0.805 31 H 0.276 0.724 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.453 -27.147 0.717 27.195 hybrid contribution 1.994 1.346 -0.504 2.458 sum 0.541 -25.801 0.213 25.808 Atomic orbital electron populations 1.20617 0.80617 1.06206 1.05732 1.25100 0.97967 0.84612 0.99117 1.22786 0.90053 1.02357 1.13034 1.20819 0.89436 0.89064 1.01937 1.42490 1.06308 1.06101 1.72521 1.21137 0.92398 0.80649 0.74069 1.90733 1.34452 1.68579 1.47913 1.21364 0.93915 0.89797 1.09591 1.23091 0.97320 0.96459 1.06778 1.83980 1.09498 0.86042 1.94555 1.26623 0.91349 0.95200 1.16936 1.74249 1.15298 1.07076 1.19033 1.74100 1.18960 1.00516 1.35631 1.21767 0.84659 0.90963 0.95055 1.19348 0.98198 0.87317 1.50151 0.89788 1.27696 1.07764 0.92343 0.89871 1.70650 1.25287 1.16555 1.32327 0.82420 0.70286 0.72880 0.77971 1.21546 1.20269 1.22343 1.46232 1.08510 1.04022 1.62702 1.21928 0.74644 1.04586 1.03841 1.74009 0.98353 1.13122 1.27155 1.84752 1.10383 1.32832 1.69018 0.87577 0.87722 0.87926 0.80475 0.72408 0.83691 0.83673 0.90191 0.90200 0.90213 0.90203 0.87963 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.16 16 2 C 0.00 -0.07 7.48 25.00 0.19 0.11 16 3 C -0.26 -5.83 9.79 22.52 0.22 -5.61 16 4 C 0.24 5.28 8.18 134.11 1.10 6.37 16 5 N -0.62 -10.41 5.42 -309.52 -1.68 -12.09 16 6 C 0.53 10.63 7.79 87.66 0.68 11.32 16 7 O -0.54 -15.94 13.26 -3.01 -0.04 -15.98 16 8 C -0.11 -1.51 5.70 29.85 0.17 -1.34 16 9 C -0.09 -2.26 4.51 71.98 0.32 -1.94 16 10 S 0.03 0.90 21.79 -56.49 -1.23 -0.33 16 11 C 0.07 3.20 8.09 179.18 1.45 4.65 16 12 N -0.31 -16.35 11.62 -56.17 -0.65 -17.00 16 13 N -0.44 -25.28 7.50 -55.02 -0.41 -25.69 16 14 C 0.32 17.33 7.21 133.23 0.96 18.29 16 15 C -0.51 -27.58 9.47 23.09 0.22 -27.36 16 16 H 0.08 4.39 7.46 -2.91 -0.02 4.37 16 17 C 0.04 2.39 5.52 85.29 0.47 2.86 16 18 N -0.82 -44.59 13.65 21.86 0.30 -44.29 16 19 Si 1.14 58.16 26.40 68.60 1.81 59.97 16 20 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.28 -14.98 6.25 99.48 0.62 -14.36 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 N -0.51 -22.96 3.26 -543.62 -1.77 -24.73 16 24 C 0.09 2.94 10.89 127.77 1.39 4.33 16 25 N -0.41 -9.19 12.10 -56.32 -0.68 -9.87 16 26 O 0.09 1.78 11.19 71.21 0.80 2.58 16 27 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.18 4.51 6.22 -2.91 -0.02 4.49 16 31 H 0.44 4.04 8.82 -92.71 -0.82 3.23 16 32 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 35 H 0.08 2.49 8.10 -2.40 -0.02 2.47 16 36 H 0.29 14.75 8.73 -92.71 -0.81 13.94 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.57 7.85 -2.38 -0.02 2.56 16 39 H 0.08 2.58 7.47 -2.39 -0.02 2.56 16 Total: -1.00 -79.97 353.33 4.53 -75.44 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 0.18 Total: 0.13 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 7.92 Total: 11.85 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -4.90 Total: -133.66 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.76 Total: -13.40 kcal Atomic # 14 Polarization: 58.16 SS G_CDS: 1.81 Total: 59.97 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.23 Total: -0.33 kcal Total: -79.97 4.53 -75.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357100459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.627 kcal (2) G-P(sol) polarization free energy of solvation -79.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds