Wall clock time and date at job start Tue Mar 31 2020 20:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46804 * 2 1 4 4 C 1.36882 * 119.99826 * 222.34910 * 3 2 1 5 5 H 1.07993 * 120.00373 * 219.45611 * 4 3 2 6 6 C 1.39046 * 119.99640 * 39.45614 * 4 3 2 7 7 N 1.31362 * 120.00080 * 28.47706 * 6 4 3 8 8 Si 1.86802 * 119.99832 * 208.46995 * 6 4 3 9 9 H 1.48503 * 109.46772 * 90.00500 * 8 6 4 10 10 H 1.48496 * 109.46969 * 210.00153 * 8 6 4 11 11 H 1.48490 * 109.47357 * 330.00444 * 8 6 4 12 12 C 1.34771 * 120.00392 * 42.35197 * 3 2 1 13 13 O 1.21600 * 119.99887 * 195.13615 * 12 3 2 14 14 C 1.47661 * 120.00132 * 15.13622 * 12 3 2 15 15 C 1.39613 * 120.12823 * 8.78103 * 14 12 3 16 16 C 1.38514 * 119.78815 * 180.24795 * 15 14 12 17 17 N 1.40033 * 119.97714 * 179.73171 * 16 15 14 18 18 C 1.47047 * 125.40928 * 351.70267 * 17 16 15 19 19 C 1.54110 * 103.85885 * 180.02562 * 18 17 16 20 20 N 1.47051 * 103.86218 * 359.97438 * 19 18 17 21 21 C 1.33944 * 109.18287 * 0.02562 * 20 19 18 22 22 O 1.21590 * 123.04553 * 179.97438 * 21 20 19 23 23 C 1.39031 * 120.04685 * 359.46095 * 16 15 14 24 24 C 1.38186 * 120.25433 * 0.24891 * 23 16 15 25 25 C 1.38150 * 120.21421 * 0.02562 * 24 23 16 26 26 Cl 1.73609 * 120.02151 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47055 * 193.84216 * 1 2 3 28 28 H 1.08992 * 109.47239 * 313.84931 * 1 2 3 29 29 H 1.09006 * 109.46393 * 73.84731 * 1 2 3 30 30 H 1.08997 * 109.47162 * 239.99433 * 2 1 3 31 31 H 1.09002 * 109.46712 * 119.99602 * 2 1 3 32 32 H 0.97000 * 120.00170 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.10630 * 0.02562 * 15 14 12 34 34 H 1.08998 * 110.55404 * 298.59307 * 18 17 16 35 35 H 1.08998 * 110.55198 * 61.41325 * 18 17 16 36 36 H 1.09001 * 110.54504 * 241.40759 * 19 18 17 37 37 H 1.08995 * 110.55076 * 118.60109 * 19 18 17 38 38 H 0.97003 * 125.40666 * 180.25989 * 20 19 18 39 39 H 1.07996 * 119.86967 * 180.27069 * 23 16 15 40 40 H 1.07997 * 119.89040 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.0724 1.7345 -0.7986 5 1 3.8226 2.4189 -0.4312 6 6 3.1773 1.2120 -2.0829 7 7 2.0946 0.8682 -2.7425 8 14 4.8578 0.9991 -2.8702 9 1 5.3889 -0.3494 -2.5463 10 1 4.7360 1.1424 -4.3432 11 1 5.7844 2.0348 -2.3471 12 6 1.4297 2.3041 0.7863 13 8 1.6371 3.4869 0.5953 14 6 0.5330 1.8789 1.8796 15 6 0.4345 0.5285 2.2201 16 6 -0.4128 0.1368 3.2435 17 7 -0.5189 -1.2172 3.5845 18 6 0.0733 -2.3340 2.8332 19 6 -0.3461 -3.5816 3.6347 20 7 -1.1295 -3.0352 4.7528 21 6 -1.1761 -1.7008 4.6468 22 8 -1.7621 -0.9925 5.4426 23 6 -1.1537 1.0877 3.9361 24 6 -1.0531 2.4255 3.6047 25 6 -0.2157 2.8273 2.5821 26 17 -0.0936 4.5093 2.1695 27 1 -0.3633 -0.9978 0.2459 28 1 -0.3633 0.7119 0.7411 29 1 -0.3632 0.2859 -0.9872 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1677 0.5041 -3.6386 33 1 1.0143 -0.2089 1.6848 34 1 -0.3339 -2.3741 1.8229 35 1 1.1591 -2.2436 2.8058 36 1 0.5317 -4.1108 4.0056 37 1 -0.9611 -4.2410 3.0223 38 1 -1.5435 -3.5579 5.4573 39 1 -1.8102 0.7797 4.7364 40 1 -1.6311 3.1592 4.1469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359266413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:55 Heat of formation + Delta-G solvation = 59.687973 kcal Electronic energy + Delta-G solvation = -27844.362203 eV Core-core repulsion = 23882.228231 eV Total energy + Delta-G solvation = -3962.133972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68918 -40.07180 -37.57104 -36.70763 -36.00846 -35.08393 -34.09451 -32.96495 -30.83808 -29.76175 -29.23784 -28.53294 -25.36370 -23.90822 -23.54664 -22.66038 -21.99735 -20.87978 -19.18089 -17.95589 -17.37791 -16.99014 -16.92756 -16.41843 -15.58127 -15.32523 -14.79891 -14.67146 -14.43993 -14.18957 -14.11566 -13.98791 -13.76182 -13.35127 -12.87348 -12.71786 -12.55492 -12.16872 -12.12461 -11.94338 -11.43348 -11.40538 -11.27807 -11.11431 -10.99515 -10.54356 -10.45264 -10.28910 -10.17215 -9.89318 -9.76860 -9.41104 -9.01666 -8.23355 -8.10667 -7.63948 -7.49202 -6.46728 -4.00288 1.24987 1.46194 2.23314 2.82671 2.89486 3.11141 3.21287 3.25687 3.54750 3.66636 4.02643 4.05219 4.37721 4.57654 4.61216 4.73813 4.92817 5.02571 5.11438 5.16845 5.34410 5.38002 5.53954 5.58587 5.69416 5.75404 5.90362 6.07268 6.14722 6.28259 6.29984 6.48489 6.54602 6.61420 6.81250 6.85241 6.94888 7.12500 7.27427 7.48208 8.18444 8.30691 8.43327 9.13762 9.26720 9.95333 10.57070 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004785 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.480656 B = 5850.685700 C = 7931.396724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.109 3.891 3 N -0.431 5.431 4 C -0.314 4.314 5 H 0.093 0.907 6 C 0.045 3.955 7 N -0.844 5.844 8 Si 0.912 3.088 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.488 3.512 13 O -0.545 6.545 14 C -0.085 4.085 15 C -0.133 4.133 16 C 0.154 3.846 17 N -0.564 5.564 18 C 0.078 3.922 19 C 0.093 3.907 20 N -0.739 5.739 21 C 0.700 3.300 22 O -0.571 6.571 23 C -0.130 4.130 24 C -0.108 4.108 25 C -0.017 4.017 26 Cl -0.043 7.043 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.269 0.731 33 H 0.178 0.822 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.431 0.569 39 H 0.160 0.840 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -12.468 10.201 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.014 4.014 3 N -0.151 5.151 4 C -0.441 4.441 5 H 0.111 0.889 6 C -0.163 4.163 7 N -0.479 5.479 8 Si 0.738 3.262 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.277 3.723 13 O -0.427 6.427 14 C -0.090 4.090 15 C -0.154 4.154 16 C 0.061 3.939 17 N -0.291 5.291 18 C -0.045 4.045 19 C -0.032 4.032 20 N -0.401 5.401 21 C 0.401 3.599 22 O -0.449 6.449 23 C -0.151 4.151 24 C -0.127 4.127 25 C -0.046 4.046 26 Cl -0.013 7.013 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.194 0.806 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.273 0.727 39 H 0.177 0.823 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.574 -11.364 10.200 16.256 hybrid contribution 0.533 -0.582 -0.429 0.899 sum -5.041 -11.946 9.770 16.235 Atomic orbital electron populations 1.23231 0.96766 1.01475 1.04272 1.21660 0.93292 0.86242 1.00253 1.43365 1.28905 1.05570 1.37273 1.19426 0.99462 1.30379 0.94866 0.88930 1.25439 0.98097 0.97333 0.95427 1.70109 1.27954 1.38533 1.11337 0.86169 0.83002 0.79009 0.78054 1.20200 1.21000 1.19123 1.17970 0.82582 0.86583 0.85134 1.90712 1.63094 1.16041 1.72825 1.20064 0.99155 0.91637 0.98174 1.22580 0.99021 0.97494 0.96294 1.17263 0.99115 0.80260 0.97232 1.44367 1.53394 1.04829 1.26495 1.22696 1.00734 0.83797 0.97229 1.22405 0.96630 0.95991 0.88139 1.45066 1.58531 1.06086 1.30417 1.15810 0.79753 0.82857 0.81462 1.90860 1.48830 1.59824 1.45372 1.21532 1.00700 0.91261 1.01596 1.20792 0.99177 0.95829 0.96917 1.20978 0.99493 0.86662 0.97497 1.98375 1.97111 1.12970 1.92879 0.93275 0.89326 0.91340 0.88876 0.93800 0.92105 0.80557 0.88594 0.88800 0.89451 0.89416 0.72658 0.82296 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.56 8.00 37.16 0.30 -3.26 16 2 C 0.11 2.13 5.35 -4.04 -0.02 2.11 16 3 N -0.43 -10.48 2.80 -118.18 -0.33 -10.81 16 4 C -0.31 -8.33 8.76 -15.00 -0.13 -8.46 16 5 H 0.09 2.57 7.98 -52.49 -0.42 2.15 16 6 C 0.04 1.13 4.59 -17.45 -0.08 1.05 16 7 N -0.84 -21.80 12.33 55.50 0.68 -21.11 16 8 Si 0.91 19.38 29.64 -169.99 -5.04 14.34 16 9 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.49 12.05 7.01 -12.42 -0.09 11.96 16 13 O -0.55 -15.23 14.06 5.28 0.07 -15.15 16 14 C -0.09 -1.73 4.40 -104.96 -0.46 -2.19 16 15 C -0.13 -2.24 5.48 -38.97 -0.21 -2.45 16 16 C 0.15 2.39 6.60 -83.71 -0.55 1.84 16 17 N -0.56 -7.16 3.16 -118.27 -0.37 -7.54 16 18 C 0.08 0.65 6.51 -3.16 -0.02 0.63 16 19 C 0.09 0.51 8.06 -3.16 -0.03 0.49 16 20 N -0.74 -6.13 6.37 -64.70 -0.41 -6.54 16 21 C 0.70 9.13 8.52 -88.40 -0.75 8.38 16 22 O -0.57 -9.41 14.77 5.29 0.08 -9.33 16 23 C -0.13 -2.09 9.27 -39.31 -0.36 -2.45 16 24 C -0.11 -1.76 9.81 -39.63 -0.39 -2.15 16 25 C -0.02 -0.33 6.35 -39.04 -0.25 -0.58 16 26 Cl -0.04 -0.85 26.05 -51.86 -1.35 -2.21 16 27 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 28 H 0.09 1.67 3.15 -76.49 -0.24 1.43 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.96 6.19 -51.93 -0.32 1.64 16 31 H 0.04 0.73 5.79 -51.93 -0.30 0.43 16 32 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.18 2.75 1.89 -55.55 -0.11 2.65 16 34 H 0.10 0.72 6.99 -51.93 -0.36 0.36 16 35 H 0.09 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.43 2.65 8.96 -40.82 -0.37 2.28 16 39 H 0.16 2.59 5.31 -52.49 -0.28 2.31 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -33.79 331.32 -8.73 -42.52 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.00 Total: 5.93 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -3.05 Total: 4.91 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.43 Total: -46.00 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.15 Total: -24.48 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.04 Total: 14.34 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.35 Total: -2.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.79 -8.73 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359266413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.204 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds