Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46804 * 2 1 4 4 C 1.36882 * 119.99826 * 222.34910 * 3 2 1 5 5 H 1.07993 * 120.00373 * 219.45611 * 4 3 2 6 6 C 1.39046 * 119.99640 * 39.45614 * 4 3 2 7 7 N 1.31362 * 120.00080 * 28.47706 * 6 4 3 8 8 Si 1.86802 * 119.99832 * 208.46995 * 6 4 3 9 9 H 1.48503 * 109.46772 * 90.00500 * 8 6 4 10 10 H 1.48496 * 109.46969 * 210.00153 * 8 6 4 11 11 H 1.48490 * 109.47357 * 330.00444 * 8 6 4 12 12 C 1.34771 * 120.00392 * 42.35197 * 3 2 1 13 13 O 1.21600 * 119.99887 * 195.13615 * 12 3 2 14 14 C 1.47661 * 120.00132 * 15.13622 * 12 3 2 15 15 C 1.39613 * 120.12823 * 8.78103 * 14 12 3 16 16 C 1.38514 * 119.78815 * 180.24795 * 15 14 12 17 17 N 1.40033 * 119.97714 * 179.73171 * 16 15 14 18 18 C 1.47047 * 125.40928 * 351.70267 * 17 16 15 19 19 C 1.54110 * 103.85885 * 180.02562 * 18 17 16 20 20 N 1.47051 * 103.86218 * 359.97438 * 19 18 17 21 21 C 1.33944 * 109.18287 * 0.02562 * 20 19 18 22 22 O 1.21590 * 123.04553 * 179.97438 * 21 20 19 23 23 C 1.39031 * 120.04685 * 359.46095 * 16 15 14 24 24 C 1.38186 * 120.25433 * 0.24891 * 23 16 15 25 25 C 1.38150 * 120.21421 * 0.02562 * 24 23 16 26 26 Cl 1.73609 * 120.02151 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47055 * 193.84216 * 1 2 3 28 28 H 1.08992 * 109.47239 * 313.84931 * 1 2 3 29 29 H 1.09006 * 109.46393 * 73.84731 * 1 2 3 30 30 H 1.08997 * 109.47162 * 239.99433 * 2 1 3 31 31 H 1.09002 * 109.46712 * 119.99602 * 2 1 3 32 32 H 0.97000 * 120.00170 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.10630 * 0.02562 * 15 14 12 34 34 H 1.08998 * 110.55404 * 298.59307 * 18 17 16 35 35 H 1.08998 * 110.55198 * 61.41325 * 18 17 16 36 36 H 1.09001 * 110.54504 * 241.40759 * 19 18 17 37 37 H 1.08995 * 110.55076 * 118.60109 * 19 18 17 38 38 H 0.97003 * 125.40666 * 180.25989 * 20 19 18 39 39 H 1.07996 * 119.86967 * 180.27069 * 23 16 15 40 40 H 1.07997 * 119.89040 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.0724 1.7345 -0.7986 5 1 3.8226 2.4189 -0.4312 6 6 3.1773 1.2120 -2.0829 7 7 2.0946 0.8682 -2.7425 8 14 4.8578 0.9991 -2.8702 9 1 5.3889 -0.3494 -2.5463 10 1 4.7360 1.1424 -4.3432 11 1 5.7844 2.0348 -2.3471 12 6 1.4297 2.3041 0.7863 13 8 1.6371 3.4869 0.5953 14 6 0.5330 1.8789 1.8796 15 6 0.4345 0.5285 2.2201 16 6 -0.4128 0.1368 3.2435 17 7 -0.5189 -1.2172 3.5845 18 6 0.0733 -2.3340 2.8332 19 6 -0.3461 -3.5816 3.6347 20 7 -1.1295 -3.0352 4.7528 21 6 -1.1761 -1.7008 4.6468 22 8 -1.7621 -0.9925 5.4426 23 6 -1.1537 1.0877 3.9361 24 6 -1.0531 2.4255 3.6047 25 6 -0.2157 2.8273 2.5821 26 17 -0.0936 4.5093 2.1695 27 1 -0.3633 -0.9978 0.2459 28 1 -0.3633 0.7119 0.7411 29 1 -0.3632 0.2859 -0.9872 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1677 0.5041 -3.6386 33 1 1.0143 -0.2089 1.6848 34 1 -0.3339 -2.3741 1.8229 35 1 1.1591 -2.2436 2.8058 36 1 0.5317 -4.1108 4.0056 37 1 -0.9611 -4.2410 3.0223 38 1 -1.5435 -3.5579 5.4573 39 1 -1.8102 0.7797 4.7364 40 1 -1.6311 3.1592 4.1469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359266413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = 36.281874 kcal Electronic energy + Delta-G solvation = -27845.377167 eV Core-core repulsion = 23882.228231 eV Total energy + Delta-G solvation = -3963.148937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.70083 -41.49832 -39.11595 -37.75638 -37.45441 -36.82454 -35.14677 -34.67605 -32.54180 -30.94221 -30.54118 -29.51817 -27.17585 -25.17757 -24.68143 -24.04880 -23.10208 -22.19182 -20.55174 -19.25439 -18.83091 -18.29145 -17.89711 -17.65675 -17.14456 -16.61200 -16.40957 -16.02515 -15.71450 -15.63649 -15.44107 -15.03883 -14.82961 -14.68109 -14.37519 -13.71400 -13.71038 -13.61443 -13.51367 -13.18831 -13.03570 -12.93377 -12.90157 -12.62842 -12.44851 -12.16467 -12.03553 -11.86166 -11.61769 -11.16307 -10.96593 -10.89263 -10.15160 -10.06010 -9.58580 -9.39790 -8.78811 -8.37242 -6.00984 -0.19523 0.14499 1.25980 1.41959 1.43428 1.46693 1.57983 1.82811 2.21946 2.30992 2.73271 2.88923 2.98973 3.08204 3.47840 3.55085 3.77769 3.98972 4.12959 4.15836 4.20825 4.27227 4.35008 4.45732 4.62686 4.65579 4.78227 4.80075 4.89082 4.95075 5.00167 5.20307 5.27975 5.30818 5.34982 5.46042 5.50652 5.88512 6.14180 6.22173 6.36983 6.56903 7.22158 7.40665 7.41031 8.08294 8.65709 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004785 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.480656 B = 5850.685700 C = 7931.396724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.108 3.892 3 N -0.443 5.443 4 C -0.350 4.350 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.869 5.869 8 Si 0.978 3.022 9 H -0.254 1.254 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.476 3.524 13 O -0.595 6.595 14 C -0.107 4.107 15 C -0.120 4.120 16 C 0.169 3.831 17 N -0.568 5.568 18 C 0.062 3.938 19 C 0.098 3.902 20 N -0.722 5.722 21 C 0.690 3.310 22 O -0.613 6.613 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.035 4.035 26 Cl -0.061 7.061 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.275 0.725 33 H 0.190 0.810 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.442 0.558 39 H 0.163 0.837 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 -16.305 10.999 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.014 4.014 3 N -0.162 5.162 4 C -0.478 4.478 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.504 5.504 8 Si 0.801 3.199 9 H -0.178 1.178 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.266 3.734 13 O -0.480 6.480 14 C -0.112 4.112 15 C -0.140 4.140 16 C 0.074 3.926 17 N -0.294 5.294 18 C -0.060 4.060 19 C -0.026 4.026 20 N -0.384 5.384 21 C 0.391 3.609 22 O -0.494 6.494 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.064 4.064 26 Cl -0.032 7.032 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.286 0.714 39 H 0.180 0.820 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.768 -15.322 11.001 19.724 hybrid contribution 0.508 0.519 -0.587 0.934 sum -5.261 -14.802 10.414 18.848 Atomic orbital electron populations 1.23142 0.95358 1.03984 1.02180 1.21859 0.94396 0.83867 1.01298 1.43632 1.28423 1.07372 1.36809 1.19368 1.00273 1.31804 0.96316 0.91779 1.26156 1.01451 0.96258 0.95176 1.70163 1.29635 1.38814 1.11796 0.85190 0.78327 0.79537 0.76806 1.17813 1.20751 1.20137 1.18666 0.82581 0.86182 0.85938 1.90654 1.64925 1.18051 1.74345 1.19790 0.99777 0.93582 0.98025 1.22426 0.99119 0.95973 0.96504 1.17216 0.97545 0.81962 0.95857 1.44442 1.53477 1.04439 1.27075 1.23173 1.01571 0.83262 0.97963 1.22705 0.97850 0.94922 0.87088 1.45049 1.57811 1.04377 1.31177 1.16104 0.79562 0.84177 0.81105 1.90824 1.50552 1.61241 1.46776 1.21696 1.00480 0.91216 1.01421 1.20986 0.98203 0.96663 0.95759 1.21165 1.00768 0.85754 0.98738 1.98360 1.97267 1.14413 1.93158 0.88486 0.90136 0.94548 0.90340 0.89943 0.91547 0.79387 0.87331 0.87537 0.86636 0.86525 0.71357 0.81980 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.48 8.00 71.98 0.58 -5.90 16 2 C 0.11 4.11 5.35 86.38 0.46 4.58 16 3 N -0.44 -22.08 2.80 -646.05 -1.81 -23.89 16 4 C -0.35 -19.25 8.76 84.10 0.74 -18.51 16 5 H 0.06 3.79 7.98 -2.91 -0.02 3.77 16 6 C 0.02 0.80 4.59 84.96 0.39 1.19 16 7 N -0.87 -45.32 12.33 21.68 0.27 -45.06 16 8 Si 0.98 39.94 29.64 68.60 2.03 41.98 16 9 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 10 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 12 C 0.48 24.37 7.01 86.73 0.61 24.98 16 13 O -0.59 -35.13 14.06 -4.03 -0.06 -35.18 16 14 C -0.11 -4.39 4.40 -20.09 -0.09 -4.47 16 15 C -0.12 -3.83 5.48 22.67 0.12 -3.70 16 16 C 0.17 4.86 6.60 38.09 0.25 5.11 16 17 N -0.57 -12.52 3.16 -646.83 -2.04 -14.56 16 18 C 0.06 0.73 6.51 86.65 0.56 1.30 16 19 C 0.10 0.54 8.06 86.65 0.70 1.24 16 20 N -0.72 -9.04 6.37 -477.34 -3.04 -12.08 16 21 C 0.69 15.93 8.52 179.57 1.53 17.46 16 22 O -0.61 -19.07 14.77 -4.00 -0.06 -19.13 16 23 C -0.13 -3.88 9.27 22.45 0.21 -3.67 16 24 C -0.10 -3.08 9.81 22.24 0.22 -2.86 16 25 C -0.04 -1.37 6.35 22.62 0.14 -1.22 16 26 Cl -0.06 -2.55 26.05 -2.72 -0.07 -2.62 16 27 H 0.10 2.29 6.99 -2.39 -0.02 2.28 16 28 H 0.08 2.96 3.15 -25.46 -0.08 2.88 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.08 3.25 6.19 -2.39 -0.01 3.23 16 31 H 0.08 2.50 5.79 -2.39 -0.01 2.49 16 32 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 33 H 0.19 5.37 1.89 -5.79 -0.01 5.36 16 34 H 0.11 1.04 6.99 -2.39 -0.02 1.02 16 35 H 0.11 1.04 8.06 -2.39 -0.02 1.02 16 36 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.44 3.75 8.96 -92.71 -0.83 2.92 16 39 H 0.16 5.03 5.31 -2.91 -0.02 5.01 16 40 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -78.93 331.32 1.87 -77.06 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.23 Total: 17.97 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.42 Total: 15.50 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -6.63 Total: -95.58 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.12 Total: -54.31 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.07 Total: -2.62 kcal Total: -78.93 1.87 -77.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359266413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.345 kcal (2) G-P(sol) polarization free energy of solvation -78.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds