Wall clock time and date at job start Tue Mar 31 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46834 * 2 1 4 4 C 1.50697 * 109.47543 * 239.99288 * 2 1 3 5 5 H 1.08003 * 120.00026 * 240.00324 * 4 2 1 6 6 C 1.37880 * 119.99906 * 59.99815 * 4 2 1 7 7 N 1.31513 * 119.99899 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99880 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.46957 * 269.99812 * 8 6 4 10 10 H 1.48504 * 109.47126 * 29.99872 * 8 6 4 11 11 H 1.48504 * 109.46963 * 149.99690 * 8 6 4 12 12 N 1.46505 * 109.46819 * 119.98998 * 2 1 3 13 13 S 1.65598 * 120.00111 * 265.00168 * 12 2 1 14 14 O 1.42104 * 106.40125 * 178.54193 * 13 12 2 15 15 O 1.42098 * 106.40447 * 311.46026 * 13 12 2 16 16 C 1.76199 * 107.21640 * 65.00347 * 13 12 2 17 17 C 1.38360 * 119.93383 * 269.72264 * 16 13 12 18 18 C 1.38319 * 120.27394 * 179.72578 * 17 16 13 19 19 C 1.38000 * 120.13775 * 0.54850 * 18 17 16 20 20 C 1.39464 * 119.85882 * 359.73284 * 19 18 17 21 21 C 1.48024 * 120.13279 * 180.02562 * 20 19 18 22 22 N 1.31626 * 126.47674 * 158.46422 * 21 20 19 23 23 N 1.28414 * 110.49489 * 179.87464 * 22 21 20 24 24 N 1.28899 * 110.39506 * 0.40258 * 23 22 21 25 25 N 1.35599 * 126.47481 * 338.77683 * 21 20 19 26 26 C 1.46505 * 127.40061 * 359.94451 * 25 21 20 27 27 C 1.37962 * 119.93235 * 90.00135 * 16 13 12 28 28 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47532 * 300.00278 * 1 2 3 30 30 H 1.08997 * 109.47074 * 60.00664 * 1 2 3 31 31 H 0.97000 * 119.99792 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99849 * 85.00239 * 12 2 1 33 33 H 1.08006 * 119.85765 * 0.02562 * 17 16 13 34 34 H 1.08001 * 119.92700 * 180.25660 * 18 17 16 35 35 H 1.07991 * 120.06914 * 179.70302 * 19 18 17 36 36 H 1.09002 * 109.47081 * 83.63722 * 26 25 21 37 37 H 1.09000 * 109.47090 * 203.63517 * 26 25 21 38 38 H 1.08999 * 109.47038 * 323.63448 * 26 25 21 39 39 H 1.08003 * 120.06805 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 2.1374 -0.8600 -3.5564 8 14 0.6259 1.2795 -2.6543 9 1 -0.8019 0.8741 -2.6995 10 1 0.8491 2.1771 -1.4925 11 1 0.9773 1.9949 -3.9073 12 7 2.0183 -0.6904 1.1964 13 16 2.4120 0.1775 2.5505 14 8 2.8122 -0.7693 3.5317 15 8 3.2435 1.2446 2.1156 16 6 0.9273 0.9151 3.1473 17 6 0.5553 2.1726 2.7061 18 6 -0.6117 2.7558 3.1656 19 6 -1.4068 2.0905 4.0765 20 6 -1.0342 0.8252 4.5294 21 6 -1.8828 0.1059 5.5060 22 7 -1.8978 -1.1923 5.7229 23 7 -2.7485 -1.4852 6.6392 24 7 -3.3366 -0.4196 7.0634 25 7 -2.7959 0.6592 6.3419 26 6 -3.1440 2.0768 6.4669 27 6 0.1409 0.2399 4.0579 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9034 -0.5285 -4.4374 32 1 2.1109 -1.6560 1.1952 33 1 1.1764 2.6989 1.9963 34 1 -0.8988 3.7359 2.8144 35 1 -2.3152 2.5490 4.4381 36 1 -3.8766 2.3397 5.7039 37 1 -3.5660 2.2616 7.4548 38 1 -2.2483 2.6838 6.3351 39 1 0.4348 -0.7396 4.4053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360285559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:25 Heat of formation + Delta-G solvation = 85.165846 kcal Electronic energy + Delta-G solvation = -26954.624504 eV Core-core repulsion = 23027.931793 eV Total energy + Delta-G solvation = -3926.692711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.28706 -39.63779 -36.99468 -35.86237 -35.71297 -35.55451 -33.47283 -32.29970 -31.71469 -30.70488 -29.33686 -28.77941 -25.25923 -24.49838 -24.03237 -22.96338 -21.82385 -21.15817 -19.38435 -18.29363 -17.60189 -17.41762 -17.08358 -16.54803 -16.19412 -16.05014 -15.60207 -15.41600 -14.72511 -14.32132 -14.30157 -14.23825 -13.68645 -13.53955 -13.29767 -13.19756 -12.71424 -12.49829 -12.33944 -12.26029 -12.03519 -12.01098 -11.80145 -11.69461 -11.33151 -11.23773 -11.16904 -10.85988 -10.81404 -10.77315 -10.30839 -9.85018 -9.63624 -9.47228 -9.20792 -8.93242 -8.59227 -6.23737 -4.25927 -0.01269 0.47223 0.75359 1.07318 1.40690 2.06120 3.00136 3.13441 3.20366 3.27121 3.33394 3.47222 3.73110 4.00887 4.19465 4.23211 4.29256 4.35299 4.54035 4.59742 4.66963 4.75410 4.96473 5.04727 5.07142 5.12779 5.19425 5.43768 5.59410 5.72659 5.75160 5.81738 5.84660 6.06868 6.22479 6.29837 6.36414 6.81316 7.10109 7.35355 7.74683 8.14622 8.33544 8.79381 9.34256 10.88936 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003649 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.050303 B = 7670.916409 C = 8103.044568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.240 3.760 3 H 0.050 0.950 4 C -0.524 4.524 5 H 0.085 0.915 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.292 1.292 12 N -1.087 6.087 13 S 2.687 3.313 14 O -0.967 6.967 15 O -0.953 6.953 16 C -0.669 4.669 17 C 0.011 3.989 18 C -0.136 4.136 19 C -0.053 4.053 20 C -0.067 4.067 21 C 0.297 3.703 22 N -0.318 5.318 23 N -0.034 5.034 24 N -0.085 5.085 25 N -0.380 5.380 26 C 0.080 3.920 27 C 0.040 3.960 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.418 0.582 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 11.039 16.752 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.563 4.563 5 H 0.103 0.897 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.189 1.189 11 H -0.219 1.219 12 N -0.849 5.849 13 S 2.773 3.227 14 O -0.957 6.957 15 O -0.943 6.943 16 C -0.753 4.753 17 C -0.009 4.009 18 C -0.155 4.155 19 C -0.073 4.073 20 C -0.072 4.072 21 C 0.022 3.978 22 N -0.170 5.170 23 N -0.029 5.029 24 N -0.070 5.070 25 N -0.176 5.176 26 C -0.062 4.062 27 C 0.018 3.982 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.253 0.747 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.071 10.148 17.646 22.711 hybrid contribution -1.475 1.507 -0.565 2.183 sum -11.547 11.655 17.080 23.684 Atomic orbital electron populations 1.22719 0.99465 1.02068 0.99179 1.18999 0.89786 0.93725 0.84060 0.93208 1.21008 1.32937 1.14502 0.87888 0.89681 1.24899 0.95632 0.96646 0.95636 1.69858 1.44780 1.39983 0.98049 0.86949 0.80625 0.83660 0.77596 1.20296 1.18887 1.21945 1.55269 1.83455 1.19684 1.26447 1.02141 0.73750 0.73814 0.72992 1.93573 1.80794 1.61503 1.59815 1.93594 1.62562 1.56677 1.81441 1.31496 1.25421 1.07085 1.11301 1.21323 0.94459 0.91761 0.93374 1.21214 0.95008 1.01190 0.98100 1.21587 0.98716 0.92355 0.94684 1.17449 0.95575 0.95047 0.99090 1.23476 0.91337 0.90147 0.92872 1.74849 1.18205 1.09874 1.14039 1.78009 1.02233 1.18374 1.04320 1.82529 1.19240 0.88875 1.16397 1.51667 1.28309 1.10263 1.27399 1.22440 1.03521 0.74148 1.06066 1.20978 0.89364 0.98532 0.89285 0.91768 0.94976 0.93026 0.92239 0.74651 0.83072 0.83836 0.84713 0.88683 0.87404 0.87906 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 9.00 37.16 0.33 -2.98 16 2 C 0.24 5.05 2.49 -69.08 -0.17 4.88 16 3 H 0.05 1.06 6.56 -51.93 -0.34 0.72 16 4 C -0.52 -13.52 9.34 -34.44 -0.32 -13.84 16 5 H 0.09 2.37 8.06 -52.48 -0.42 1.94 16 6 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 8 Si 0.88 19.91 24.37 -169.99 -4.14 15.77 16 9 H -0.28 -6.02 6.87 56.52 0.39 -5.63 16 10 H -0.26 -5.47 6.53 56.52 0.37 -5.10 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 N -1.09 -19.60 5.46 -5.88 -0.03 -19.63 16 13 S 2.69 44.48 5.72 -107.50 -0.61 43.86 16 14 O -0.97 -17.27 17.27 -57.17 -0.99 -18.26 16 15 O -0.95 -18.12 16.60 -57.17 -0.95 -19.07 16 16 C -0.67 -9.03 5.05 -39.64 -0.20 -9.23 16 17 C 0.01 0.12 8.60 -39.51 -0.34 -0.22 16 18 C -0.14 -1.15 10.03 -39.64 -0.40 -1.54 16 19 C -0.05 -0.42 8.68 -39.21 -0.34 -0.76 16 20 C -0.07 -0.73 5.86 -104.96 -0.61 -1.34 16 21 C 0.30 3.53 7.75 -155.22 -1.20 2.33 16 22 N -0.32 -4.69 12.03 32.32 0.39 -4.30 16 23 N -0.03 -0.51 13.37 60.35 0.81 0.30 16 24 N -0.09 -1.07 13.93 60.35 0.84 -0.23 16 25 N -0.38 -3.68 4.10 -65.55 -0.27 -3.94 16 26 C 0.08 0.30 9.73 59.85 0.58 0.89 16 27 C 0.04 0.51 9.18 -39.21 -0.36 0.15 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.50 6.18 -51.93 -0.32 0.18 16 30 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.42 6.99 8.83 -34.47 -0.30 6.69 16 33 H 0.15 1.71 7.60 -52.48 -0.40 1.31 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.55 5.15 -52.49 -0.27 0.28 16 36 H 0.09 0.17 7.68 -51.93 -0.40 -0.23 16 37 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.21 6.74 -51.93 -0.35 -0.14 16 39 H 0.16 2.04 7.56 -52.48 -0.40 1.64 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -34.91 338.75 -6.03 -40.94 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.82 Total: 4.04 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.13 Total: -19.74 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 2.51 Total: -52.65 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.94 Total: -37.32 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.14 Total: 15.77 kcal Atomic # 16 Polarization: 44.48 SS G_CDS: -0.61 Total: 43.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.91 -6.03 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360285559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.104 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds